Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000434.1

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Reverse (-)

58914 .. 60730

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000434.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atggcggtgagagcagctcttctgcggcacgtgcgagttccgctacaaaccctaaacccagccgtaaccctaaccggacccaaatggggcccaccttctctccggtggatgtcttcgcacgacgatcatctcaccaaaaacgaggtcaccgatagagtcctctccgtcgtcaagtgcttccccaaagtcgatccttctacggtgactcctgatgtacatttccaaaaagatttgggcttagatagcttggataatgtggagattgtaatggctctagaagaagagttcaagcttgagattcctgacaaggaagctgataagattgattctacaaatctggccattgagtacatctctaaccatccaatggcttcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

5.24

Isoelectric Point (pI)

39.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	3 cut(s)	5, 25, 41
AclWI	GGATC	1 cut(s)	185
AcoI	YGGCCR	1 cut(s)	339
AcvI	CACGTG	1 cut(s)	31
AfaI	GTAC	2 cut(s)	216, 350
AfiI	CCNNNNNNNGG	2 cut(s)	86, 367
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	4 cut(s)	17, 246, 292, 314
AluI	AGCT	4 cut(s)	17, 246, 292, 314
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	88, 339
ApaI	GGGCCC	1 cut(s)	92
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	129, 161
AspS9I	GGNCC	3 cut(s)	77, 88, 89
AsuHPI	GGTGA	4 cut(s)	19, 124, 139, 214
AvaII	GGWCC	1 cut(s)	77
BaeGI	GKGCMC	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	92
BbrPI	CACGTG	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	275
BisI	GCNGC	2 cut(s)	15, 26
BlsI	GCNGC	2 cut(s)	16, 27
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	77, 88, 89
BmiI	GGNNCC	3 cut(s)	79, 89, 90
BpiI	GAAGAC	1 cut(s)	105
BplI	GAGNNNNNCTC	3 cut(s)	33, 338, 370
BpuEI	CTTGAG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	31
BsaWI	WCCGGW	2 cut(s)	74, 102
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 190, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 367
BseGI	GGATG	2 cut(s)	114, 361
BseLI	CCNNNNNNNGG	2 cut(s)	86, 367
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	90, 341
BsiSI	CCGG	2 cut(s)	75, 103
BslI	CCNNNNNNNGG	2 cut(s)	86, 367
BsnI	GGCC	2 cut(s)	90, 341
Bsp120I	GGGCCC	1 cut(s)	88
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	124, 190
BspACI	CCGC	3 cut(s)	5, 25, 41
BspANI	GGCC	2 cut(s)	90, 341
BspLI	GGNNCC	3 cut(s)	79, 89, 90
BspPI	GGATC	1 cut(s)	185
BspQI	GCTCTTC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	214
BssMI	GATC	2 cut(s)	124, 190
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	2 cut(s)	24, 276
BstAUI	TGTACA	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	31
BstDEI	CTNAG	1 cut(s)	238
BstEII	GGTNACC	1 cut(s)	145
BstF5I	GGATG	2 cut(s)	114, 361
BstKTI	GATC	2 cut(s)	127, 193
BstMBI	GATC	2 cut(s)	124, 190
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 31, 40, 243
BstPI	GGTNACC	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	90, 341
BtsCI	GGATG	2 cut(s)	114, 361
Cfr13I	GGNCC	3 cut(s)	77, 88, 89
Csp6I	GTAC	2 cut(s)	215, 349
CviQI	GTAC	2 cut(s)	215, 349
DdeI	CTNAG	1 cut(s)	238
DpnI	GATC	2 cut(s)	126, 192
DpnII	GATC	2 cut(s)	124, 190
EaeI	YGGCCR	1 cut(s)	339
Eam1104I	CTCTTC	2 cut(s)	24, 276
EarI	CTCTTC	2 cut(s)	24, 276
Eco24I	GRGCYC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	77
Eco72I	CACGTG	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	88
EcoO65I	GGTNACC	1 cut(s)	145
EcoT38I	GRGCYC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	15, 26
FokI	GGATG	2 cut(s)	121, 348
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	2 cut(s)	15, 26
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	15, 26
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	90, 341
HapII	CCGG	2 cut(s)	75, 103
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	156, 205, 298, 326
HpaII	CCGG	2 cut(s)	75, 103
HphI	GGTGA	4 cut(s)	19, 124, 139, 214
Hpy188III	TCNNGA	3 cut(s)	209, 275, 302
Hpy99I	CGWCG	2 cut(s)	125, 170
HpyAV	CCTTC	2 cut(s)	105, 204
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 31, 40, 243
HpyF3I	CTNAG	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	30
Kzo9I	GATC	2 cut(s)	124, 190
LguI	GCTCTTC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	72, 88, 116, 222, 315, 323
Lsp1109I	GCAGC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	64, 145, 202
MalI	GATC	2 cut(s)	126, 192
MboI	GATC	2 cut(s)	124, 190
MboII	GAAGA	4 cut(s)	11, 105, 290, 293
MhlI	GDGCHC	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	165, 199
MnlI	CCTC	2 cut(s)	136, 170
Mox20I	TGGCCA	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	341
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	2 cut(s)	75, 103
MwoI	GCNNNNNNNGC	4 cut(s)	11, 31, 40, 243
NdeII	GATC	2 cut(s)	124, 190
NlaIV	GGNNCC	3 cut(s)	79, 89, 90
NmuCI	GTSAC	2 cut(s)	145, 202
PciSI	GCTCTTC	1 cut(s)	24
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	2 cut(s)	298, 326
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	2 cut(s)	16, 27
PleI	GAGTC	2 cut(s)	164, 199
PmaCI	CACGTG	1 cut(s)	31
PmlI	CACGTG	1 cut(s)	31
PpsI	GAGTC	2 cut(s)	164, 199
Ppu21I	YACGTR	1 cut(s)	31
PspCI	CACGTG	1 cut(s)	31
PspEI	GGTNACC	1 cut(s)	145
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	79, 89, 90
PspOMI	GGGCCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	77, 88, 89
RsaI	GTAC	2 cut(s)	216, 350
RsaNI	GTAC	2 cut(s)	215, 349
SapI	GCTCTTC	1 cut(s)	24
SatI	GCNGC	2 cut(s)	15, 26
Sau3AI	GATC	2 cut(s)	124, 190
Sau96I	GGNCC	3 cut(s)	77, 88, 89
SchI	GAGTC	2 cut(s)	165, 199
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	19, 33, 97, 147, 248, 294, 316
SinI	GGWCC	1 cut(s)	77
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SsiI	CCGC	3 cut(s)	5, 25, 41
SspMI	CTAG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	1 cut(s)	189
TatI	WGTACW	2 cut(s)	214, 348
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	2 cut(s)	298, 326
TseFI	GTSAC	2 cut(s)	145, 202
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	2 cut(s)	145, 202
TspGWI	ACGGA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	77
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.