Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008500

Physical Location & Seq

Genomic Coordinates Forward (+)

9255919 .. 9258186

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1088600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGCTGAGAGCAGCCGTACTGCGGCACTTGCGAGTTCCGGTAACCCTAAACCCGGTCCTAACCCTAACTGGAGGCAAATGGGCCCCACCCTCTCTCCGATGGATGTCATCGCACGGCGACGATCATCTGACGAAAAGCGAGGTTACCGACAGAGTCCTCTCCGTTGTCAAGAGCTTCCCGAAAGTCGATCCTTCCACGGTGACTCCTGATGTACATTTTCAGAAGGATTTGGGCTTGGATAGCTTGGATAATGTGGAGATTGTGATTGCTCTAGAAGAAGAGTTCAAGCTAGAGATTCCAGATTTGGAAGCTGTTAGGATCGACTCTACTAATCTGGCAATTGAGTACGTCTATAACCATCCAATGGCTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0070013 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

126

Amino Acids

13.91

Weight (kDa)

5.23

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	51 - 105	1.5e-09	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44620
fragaria_vesca	FvH4_7g08760
malus_domestica	MD02G1225300.v1.1 MD07G1088600.v1.1
prunus_persica	Prupe.2G115500_v2.0.a1
pyrus_communis	pycom07g07110
rosa_chinensis	RchiOBHm_Chr1g0344041 RchiOBHm_Chr4g0442511
rosa_laevigata	RLG00000028930 RLG00000028932
rosa_multiflora	Rmu_sc0002297.1_g000002 Rmu_sc0033183.1_g000001 Rmu_ssc0000434.1_g000012
rosa_roxburghii	Rroxscaffold_4G00310100 Rroxscaffold_4G00310120
rosa_rugosa	Rorug01G0171000 Rorug01G0171100 Rorug01G0171200
rosa_samantha	Rh1AG187900 Rh1BG154000 Rh1CG173500 Rh1DG186100
rosa_wichuraiana	Rw1G015460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	367
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	185, 329
AfaI	GTAC	3 cut(s)	21, 216, 350
AfiI	CCNNNNNNNGG	3 cut(s)	24, 55, 367
AgsI	TTSAA	1 cut(s)	289
AluBI	AGCT	4 cut(s)	177, 246, 292, 314
AluI	AGCT	4 cut(s)	177, 246, 292, 314
AlwI	GGATC	2 cut(s)	185, 329
AoxI	GGCC	1 cut(s)	84
ApaI	GGGCCC	1 cut(s)	88
ApeKI	GCWGC	2 cut(s)	14, 371
AspLEI	GCGC	1 cut(s)	7
AspS9I	GGNCC	3 cut(s)	58, 84, 85
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	88
BanII	GRGCYC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	26, 358
BccI	CCATC	2 cut(s)	96, 369
BceAI	ACGGC	2 cut(s)	2, 133
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	2 cut(s)	275, 293
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	3 cut(s)	15, 26, 372
BlsI	GCNGC	3 cut(s)	16, 27, 373
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	3 cut(s)	58, 84, 85
BmiI	GGNNCC	2 cut(s)	86, 87
BmrFI	CCNGG	1 cut(s)	56
BpmI	CTGGAG	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 55, 367
Bse1I	ACTGG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	198
BseGI	GGATG	2 cut(s)	111, 361
BseLI	CCNNNNNNNGG	3 cut(s)	24, 55, 367
BseNI	ACTGG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	26, 358
BshFI	GGCC	1 cut(s)	86
BsiSI	CCGG	2 cut(s)	41, 56
BslI	CCNNNNNNNGG	3 cut(s)	24, 55, 367
BsnI	GGCC	1 cut(s)	86
Bsp120I	GGGCCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp1407I	TGTACA	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	124, 190, 321
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	86, 87
BspPI	GGATC	2 cut(s)	185, 329
BsrGI	TGTACA	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	76
BssECI	CCNNGG	1 cut(s)	198
BssMI	GATC	3 cut(s)	124, 190, 321
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	198
BstEII	GGTNACC	2 cut(s)	43, 145
BstF5I	GGATG	2 cut(s)	111, 361
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	1 cut(s)	7
BstKTI	GATC	3 cut(s)	127, 193, 324
BstMBI	GATC	3 cut(s)	124, 190, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
BstPI	GGTNACC	2 cut(s)	43, 145
BstSCI	CCNGG	1 cut(s)	54
BstSLI	GKGCMC	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	26, 358
BsuRI	GGCC	1 cut(s)	86
BtgI	CCRYGG	1 cut(s)	198
BtgZI	GCGATG	1 cut(s)	96
BtsCI	GGATG	2 cut(s)	111, 361
CfoI	GCGC	1 cut(s)	7
Cfr13I	GGNCC	3 cut(s)	58, 84, 85
Csp6I	GTAC	3 cut(s)	20, 215, 349
CviJI	RGCY	8 cut(s)	17, 86, 177, 237, 246, 292, 314, 371
CviKI_1	RGCY	8 cut(s)	17, 86, 177, 237, 246, 292, 314, 371
CviQI	GTAC	3 cut(s)	20, 215, 349
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	3 cut(s)	126, 192, 323
DpnII	GATC	3 cut(s)	124, 190, 321
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	58
Eco91I	GGTNACC	2 cut(s)	43, 145
EcoO109I	RGGNCCY	1 cut(s)	85
EcoO65I	GGTNACC	2 cut(s)	43, 145
EcoT38I	GRGCYC	1 cut(s)	88
FaiI	YATR	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	15, 26, 372
FokI	GGATG	2 cut(s)	118, 348
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	3 cut(s)	15, 26, 372
FspBI	CTAG	2 cut(s)	275, 293
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	3 cut(s)	15, 26, 372
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	41, 56
HhaI	GCGC	1 cut(s)	7
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	156, 205, 298, 326
HpaII	CCGG	2 cut(s)	41, 56
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	3 cut(s)	101, 132, 225
Hpy188III	TCNNGA	5 cut(s)	172, 181, 209, 275, 302
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	204, 220
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	351
HspAI	GCGC	1 cut(s)	5
Kzo9I	GATC	3 cut(s)	124, 190, 321
LpnPI	CCDG	6 cut(s)	54, 57, 69, 222, 315, 323
Lsp1109I	GCAGC	2 cut(s)	26, 358
MaeI	CTAG	2 cut(s)	275, 293
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	3 cut(s)	43, 145, 202
MalI	GATC	3 cut(s)	126, 192, 323
MboI	GATC	3 cut(s)	124, 190, 321
MboII	GAAGA	2 cut(s)	290, 293
MfeI	CAATTG	1 cut(s)	342
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	165, 199, 320
MnlI	CCTC	4 cut(s)	68, 103, 136, 170
MspI	CCGG	2 cut(s)	41, 56
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	11, 31, 243
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	3 cut(s)	124, 190, 321
NlaIV	GGNNCC	2 cut(s)	86, 87
NmuCI	GTSAC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	155
PflMI	CCANNNNNTGG	1 cut(s)	367
PkrI	GCNGC	3 cut(s)	16, 27, 373
PleI	GAGTC	3 cut(s)	164, 199, 320
PpsI	GAGTC	3 cut(s)	164, 199, 320
PspEI	GGTNACC	2 cut(s)	43, 145
PspN4I	GGNNCC	2 cut(s)	86, 87
PspOMI	GGGCCC	1 cut(s)	84
PspPI	GGNCC	3 cut(s)	58, 84, 85
PsyI	GACNNNGTC	1 cut(s)	155
RsaI	GTAC	3 cut(s)	21, 216, 350
RsaNI	GTAC	3 cut(s)	20, 215, 349
SatI	GCNGC	3 cut(s)	15, 26, 372
Sau3AI	GATC	3 cut(s)	124, 190, 321
Sau96I	GGNCC	3 cut(s)	58, 84, 85
SchI	GAGTC	3 cut(s)	165, 199, 320
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	6 cut(s)	147, 179, 248, 294, 316, 354
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	25
SspMI	CTAG	2 cut(s)	275, 293
StyD4I	CCNGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	189, 324
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	214
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	298
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	2 cut(s)	14, 371
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	58
XbaI	TCTAGA	1 cut(s)	274
XspI	CTAG	2 cut(s)	275, 293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.