Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

18441828 .. 18443405

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCGGAACTTGAGAATCCAAGTGTAATGTCGAAGCTGATAGCATTCTTATCTTCATTGCTAGAGCGAGTTGCTGAGTCAAACGATCTGACCCGACGAGTCGCGACTCAGTCACAGAGAGTTTCGGTGTTTCATGGACTGAGTCGACCAACGATAACGATTCAGAGCTATCTAGAGAGGATCTTCAAATACGCAAATTGTAGTCCTTCTTGCTTCGTCGTTGCTTACGTTTATCTCGATCGTTTCACTCACAGACAACCTTCACTTCCCATCAATTCCTTTAACGTCCATCGTCTTCTCATCACTAGTGTCATGGTCGCTGCTAAATTCCTCGATGATCTGTACTACAACAATGCGTATTACGCGAAAGTGGGAGGAATAAGCACGAAGGAGATGAATTTTCTAGAGCTGGATTTCTTATTCGGGTTAGGATTTGAATTAAACGTGACGCCAAACACATTCAACGCCTACTTCTCTTATCTTCAAAAGGAAATGACTCTTCTTCAACCTCTCTCTCTCGTTGTTGTCCCATCATCAAGATCTCTCATTACCTTCAACGACGATGAAGCTTCTCATCAGAAACAACAACAACAACAACTCGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

202

Amino Acids

23.04

Weight (kDa)

6.9

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	12 - 147	6.7e-42	Cyclin
Cyclin_N	PF00134	54 - 148	1.9e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	145
AccII	CGCG	2 cut(s)	104, 365
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	2 cut(s)	326, 397
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	1 cut(s)	344
AgsI	TTSAA	6 cut(s)	187, 437, 463, 485, 506, 556
AhlI	ACTAGT	1 cut(s)	305
AluBI	AGCT	4 cut(s)	37, 168, 409, 569
AluI	AGCT	4 cut(s)	37, 168, 409, 569
AlwI	GGATC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	2 cut(s)	326, 397
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	3 cut(s)	278, 297, 538
BcuI	ACTAGT	1 cut(s)	305
BfaI	CTAG	4 cut(s)	62, 173, 306, 404
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	449
Bse3DI	GCAATG	1 cut(s)	56
BseMI	GCAATG	1 cut(s)	56
BseMII	CTCAG	3 cut(s)	66, 122, 131
BseXI	GCAGC	1 cut(s)	307
Bsh1236I	CGCG	2 cut(s)	104, 365
Bsh1285I	CGRYCG	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	512
BsmFI	GGGAC	1 cut(s)	512
BsmI	GAATGC	1 cut(s)	44
Bsp143I	GATC	5 cut(s)	85, 180, 238, 337, 539
Bsp68I	TCGCGA	1 cut(s)	104
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	3 cut(s)	67, 121, 132
BspFNI	CGCG	2 cut(s)	104, 365
BspPI	GGATC	1 cut(s)	188
BsrDI	GCAATG	1 cut(s)	56
BssMI	GATC	5 cut(s)	85, 180, 238, 337, 539
BssNI	GRCGYC	1 cut(s)	449
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	449
BstDEI	CTNAG	3 cut(s)	75, 108, 140
BstFNI	CGCG	2 cut(s)	104, 365
BstKTI	GATC	5 cut(s)	88, 183, 241, 340, 542
BstMBI	GATC	5 cut(s)	85, 180, 238, 337, 539
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstUI	CGCG	2 cut(s)	104, 365
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	180, 539
BstYI	RGATCY	2 cut(s)	180, 539
BtuMI	TCGCGA	1 cut(s)	104
CseI	GACGC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	343
CviAII	CATG	2 cut(s)	134, 313
CviJI	RGCY	4 cut(s)	37, 168, 409, 569
CviKI_1	RGCY	4 cut(s)	37, 168, 409, 569
CviQI	GTAC	1 cut(s)	343
DdeI	CTNAG	3 cut(s)	75, 108, 140
DpnI	GATC	5 cut(s)	87, 182, 240, 339, 541
DpnII	GATC	5 cut(s)	85, 180, 238, 337, 539
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	20
FaeI	CATG	2 cut(s)	137, 316
FaiI	YATR	2 cut(s)	135, 314
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	2 cut(s)	133, 312
FblI	GTMKAC	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	321
FspBI	CTAG	4 cut(s)	62, 173, 306, 404
GluI	GCNGC	1 cut(s)	321
HgaI	GACGC	1 cut(s)	457
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	2 cut(s)	137, 316
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	7 cut(s)	16, 77, 99, 106, 142, 160, 496
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	3 cut(s)	90, 165, 579
Hpy188III	TCNNGA	5 cut(s)	103, 173, 236, 404, 537
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	3 cut(s)	99, 221, 563
HpyAV	CCTTC	4 cut(s)	216, 270, 382, 562
HpyCH4IV	ACGT	3 cut(s)	228, 285, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	3 cut(s)	75, 108, 140
HpySE526I	ACGT	3 cut(s)	228, 285, 444
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	2 cut(s)	137, 316
Kzo9I	GATC	5 cut(s)	85, 180, 238, 337, 539
LpnPI	CCDG	1 cut(s)	395
Lsp1109I	GCAGC	1 cut(s)	307
MaeI	CTAG	4 cut(s)	62, 173, 306, 404
MaeII	ACGT	3 cut(s)	228, 285, 444
MaeIII	GTNAC	2 cut(s)	111, 445
MalI	GATC	5 cut(s)	87, 182, 240, 339, 541
MboI	GATC	5 cut(s)	85, 180, 238, 337, 539
MboII	GAAGA	6 cut(s)	45, 175, 287, 473, 491, 494
MflI	RGATCY	2 cut(s)	180, 539
MluCI	AATT	5 cut(s)	196, 274, 326, 397, 437
MlyI	GAGTC	5 cut(s)	86, 100, 108, 151, 490
MnlI	CCTC	4 cut(s)	171, 341, 368, 519
MseI	TTAA	2 cut(s)	282, 440
Mva1269I	GAATGC	1 cut(s)	44
MvnI	CGCG	2 cut(s)	104, 365
MwoI	GCNNNNNNNGC	1 cut(s)	362
NdeII	GATC	5 cut(s)	85, 180, 238, 337, 539
NlaIII	CATG	2 cut(s)	137, 316
NmuCI	GTSAC	2 cut(s)	111, 445
NruI	TCGCGA	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	2 cut(s)	225, 234
PctI	GAATGC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	16, 160
PflFI	GACNNNGTC	2 cut(s)	109, 141
PkrI	GCNGC	1 cut(s)	322
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	5 cut(s)	85, 100, 107, 150, 490
PpsI	GAGTC	5 cut(s)	85, 100, 107, 150, 490
PsuI	RGATCY	2 cut(s)	180, 539
PsyI	GACNNNGTC	2 cut(s)	109, 141
PvuI	CGATCG	1 cut(s)	241
RruI	TCGCGA	1 cut(s)	104
RsaI	GTAC	1 cut(s)	344
RsaNI	GTAC	1 cut(s)	343
SalI	GTCGAC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	282, 440
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	5 cut(s)	85, 180, 238, 337, 539
SchI	GAGTC	5 cut(s)	86, 100, 108, 151, 490
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SpeI	ACTAGT	1 cut(s)	305
Sse9I	AATT	5 cut(s)	196, 274, 326, 397, 437
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	4 cut(s)	62, 173, 306, 404
TaiI	ACGT	3 cut(s)	231, 288, 447
TaqI	TCGA	4 cut(s)	32, 145, 237, 333
TasI	AATT	5 cut(s)	196, 274, 326, 397, 437
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	16, 160
Tru1I	TTAA	2 cut(s)	282, 440
Tru9I	TTAA	2 cut(s)	282, 440
TseFI	GTSAC	2 cut(s)	111, 445
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	2 cut(s)	111, 445
TspDTI	ATGAA	4 cut(s)	45, 122, 410, 579
Tth111I	GACNNNGTC	2 cut(s)	109, 141
XapI	RAATTY	2 cut(s)	326, 397
XbaI	TCTAGA	2 cut(s)	172, 403
XmiI	GTMKAC	1 cut(s)	145
XspI	CTAG	4 cut(s)	62, 173, 306, 404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.