Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

61710960 .. 61712366

Gene Structure 1407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG386800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCGAGAGTGATAGCTTTCCTCTCTGACGTCCTCGACCGGGTGGCCAAGTCCAACGACCTGAACCGGCGGCTCGACTCGCAGAAGCTCTCGGTGTTTCACTGCCTCACAAAACCAACAATCTCAATCCACAGCTATTTGGAGAGGATTTTCAAGTACGCAGATTGTAGCCCCTCTTGTTTTGTGGTGGCCTATGTATATCTGGATCGGTTCACACAAAGACAGAAGGCTTTGCCTATCAACTCGTTCAATGTTCACCGATTGCTCATCACTAGTGTCTTGGTCTCTGCAAAGTTCATGGATGACGTTTCTTACAACAATGCCTACTTTGCAAGAGTGGGAGGAATCAGCACGAAAGAGTTGAACCTTCTCGAGATGGATTTCCTGTTCGGATTAGGGTTCGAATTAAACGTGACAACCGAAAACTTTTTCGCCTATTGTTCGTACCTGCAAAGAGAAATGTTGCTGCAATCTCCTCCTCTACAAGTAGCAGAATCTCCTCTAAATTTGGCGAGCCGTCTGAAGCTACATTGTTCCTTCAATGAAGATGAATCGACCCATCAAAAGCAGCTTGCTGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

194

Amino Acids

22.2

Weight (kDa)

7.65

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	25 - 136	8.9e-41	Cyclin
Cyclin_N	PF00134	45 - 137	3.1e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	33
Acc36I	ACCTGC	1 cut(s)	456
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	542
AcyI	GRCGYC	1 cut(s)	30
AfaI	GTAC	2 cut(s)	158, 446
AfiI	CCNNNNNNNGG	1 cut(s)	40
AgsI	TTSAA	4 cut(s)	154, 250, 364, 541
AhlI	ACTAGT	1 cut(s)	272
AloI	GAACNNNNNNTCC	2 cut(s)	371, 403
AluBI	AGCT	5 cut(s)	17, 88, 135, 526, 571
AluI	AGCT	5 cut(s)	17, 88, 135, 526, 571
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	371
AoxI	GGCC	2 cut(s)	45, 189
ApeKI	GCWGC	3 cut(s)	466, 568, 575
ApoI	RAATTY	1 cut(s)	505
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	248
AsuII	TTCGAA	1 cut(s)	402
AvaI	CYCGRG	1 cut(s)	371
BalI	TGGCCA	1 cut(s)	47
BbvI	GCAGC	3 cut(s)	453, 562, 580
BccI	CCATC	2 cut(s)	370, 567
BceAI	ACGGC	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	289
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	576
BfuAI	ACCTGC	1 cut(s)	456
BisI	GCNGC	4 cut(s)	71, 467, 569, 576
BlsI	GCNGC	4 cut(s)	72, 468, 570, 577
Bme1390I	CCNGG	1 cut(s)	41
BmeT110I	CYCGRG	1 cut(s)	371
BmrFI	CCNGG	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	402
BpuMI	CCSGG	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	40
Bse118I	RCCGGY	1 cut(s)	66
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	40
BseRI	GAGGAG	3 cut(s)	465, 468, 489
BseXI	GCAGC	3 cut(s)	453, 562, 580
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	47, 191
BsiEI	CGRYCG	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	40, 67
BslI	CCNNNNNNNGG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	47, 191
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	371
Bsp119I	TTCGAA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	47, 191
BspMAI	CTGCAG	1 cut(s)	580
BspMI	ACCTGC	1 cut(s)	456
BspPI	GGATC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	1 cut(s)	205
BssNI	GRCGYC	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	30
BstBI	TTCGAA	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	514, 573
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	1 cut(s)	208
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	205
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 329
BstSCI	CCNGG	1 cut(s)	39
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	3 cut(s)	453, 562, 580
BsuRI	GGCC	2 cut(s)	47, 191
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	100
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	514, 573
Cfr10I	RCCGGY	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	157, 445
CviAII	CATG	1 cut(s)	298
CviQI	GTAC	2 cut(s)	157, 445
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	542
Eco88I	CYCGRG	1 cut(s)	371
FaeI	CATG	1 cut(s)	301
FaiI	YATR	3 cut(s)	195, 199, 299
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	4 cut(s)	71, 467, 569, 576
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	4 cut(s)	71, 467, 569, 576
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	4 cut(s)	71, 467, 569, 576
HaeIII	GGCC	2 cut(s)	47, 191
HapII	CCGG	2 cut(s)	40, 67
Hin1I	GRCGYC	1 cut(s)	30
Hin1II	CATG	1 cut(s)	301
HinfI	GANTC	4 cut(s)	77, 345, 494, 551
HpaII	CCGG	2 cut(s)	40, 67
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	213, 256
Hpy188I	TCNGA	3 cut(s)	28, 392, 522
Hpy188III	TCNNGA	3 cut(s)	203, 371, 373
Hpy8I	GTNNAC	2 cut(s)	213, 256
HpyAV	CCTTC	3 cut(s)	220, 377, 547
HpyCH4IV	ACGT	3 cut(s)	30, 306, 411
HpyCH4V	TGCA	5 cut(s)	290, 332, 451, 469, 578
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 329
HpySE526I	ACGT	3 cut(s)	30, 306, 411
Hsp92I	GRCGYC	1 cut(s)	30
Hsp92II	CATG	1 cut(s)	301
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	6 cut(s)	53, 74, 80, 188, 398, 461
Lsp1109I	GCAGC	3 cut(s)	453, 562, 580
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	3 cut(s)	30, 306, 411
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	1 cut(s)	557
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	2 cut(s)	404, 505
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	9 cut(s)	32, 44, 116, 138, 184, 335, 486, 489, 510
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	407
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	2 cut(s)	40, 67
MspR9I	CCNGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	2 cut(s)	79, 329
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	1 cut(s)	301
NmeAIII	GCCGAG	1 cut(s)	30
NmuCI	GTSAC	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	402
PaeR7I	CTCGAG	1 cut(s)	371
PcsI	WCGNNNNNNNCGW	2 cut(s)	408, 417
PfeI	GAWTC	3 cut(s)	345, 494, 551
PkrI	GCNGC	4 cut(s)	72, 468, 570, 577
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PstI	CTGCAG	1 cut(s)	580
RsaI	GTAC	2 cut(s)	158, 446
RsaNI	GTAC	2 cut(s)	157, 445
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	4 cut(s)	71, 467, 569, 576
Sau3AI	GATC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	41
SfcI	CTRYAG	1 cut(s)	576
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	2 cut(s)	404, 505
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	39
TaiI	ACGT	3 cut(s)	33, 309, 414
TaqI	TCGA	5 cut(s)	36, 75, 372, 402, 554
TasI	AATT	2 cut(s)	404, 505
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	345, 494, 551
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TscAI	CASTG	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	3 cut(s)	466, 568, 575
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	3 cut(s)	286, 558, 564
TspRI	CASTG	1 cut(s)	107
XapI	RAATTY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	371
XspI	CTAG	1 cut(s)	273
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.