Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

7416766 .. 7418199

Gene Structure 1434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCAGAGCTAGAGAACCCAACAGTGATGACAAAGATCATAACTTTCCTCTCTTCTCTGGTTCAAAGAGTGGCGGAATCGAACGACCTCAACAGTCATTTCCAACCCCAGAAAATCTCAGTCTTCCATGGTCTAACTAGACCCACCATTTCCATACAGAGTTACCTAGAGAGGATTTTCAAGTATGCTGATTGCAGCCCATCTTGCTTAATCGTTGCATATGTTTATCTGGATCGATTTTCGCAGAGGCAACCCTCGTTGCCAATCAACTCATTCAACGTTCACCGGTTGCTGATTACAAGTGTCATGGTGGCTGCAAAGTTCATGGATGACATGTACTACAACAATGCATACTATGCAAAAGTTGGAGGAATAAGCACAATAGAGATGAATTTTCTTGAAGTGGATTTCCTATTTGGTTTGAGCTTCGACTTAAACGTGACCCCCTCAACCTTCACCACCCACTGTTCGTATCTCCAGAGGGAGATGCTTCTATTGCAACCACCTCTAGATTCTGCAGATTCTTCTCTTAGTTTAGGCAAATCACTAAAGCTCCACTTGTGCTTTGATGAGGATGAAACCTCCCATCAGCAGCAACAACAGCAGCAGCTAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

207

Amino Acids

23.48

Weight (kDa)

5.42

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	333
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	65, 181, 277, 401
AluBI	AGCT	5 cut(s)	10, 426, 553, 610, 614
AluI	AGCT	5 cut(s)	10, 426, 553, 610, 614
AlwI	GGATC	1 cut(s)	240
ApeKI	GCWGC	5 cut(s)	195, 314, 592, 604, 607
ApoI	RAATTY	1 cut(s)	391
AsiGI	ACCGGT	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	275, 448
AsuNHI	GCTAGC	1 cut(s)	610
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	4 cut(s)	207, 301, 604, 616
BccI	CCATC	2 cut(s)	208, 594
BfaI	CTAG	5 cut(s)	11, 138, 167, 509, 611
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	5 cut(s)	196, 315, 593, 605, 608
BlsI	GCNGC	5 cut(s)	197, 316, 594, 606, 609
BmsI	GCATC	1 cut(s)	477
BmtI	GCTAGC	1 cut(s)	614
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	461
Bsa29I	ATCGAT	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse118I	RCCGGY	1 cut(s)	285
BseCI	ATCGAT	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	334, 580
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	4 cut(s)	207, 301, 604, 616
BshTI	ACCGGT	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	36, 232
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	131
BspDI	ATCGAT	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	614
BspPI	GGATC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	285
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	36, 232
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	3 cut(s)	25, 95, 467
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	612
BstDEI	CTNAG	2 cut(s)	118, 530
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	334, 580
BstKTI	GATC	2 cut(s)	39, 235
BstMBI	GATC	2 cut(s)	36, 232
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 601
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	4 cut(s)	207, 301, 604, 616
BstV2I	GAAGAC	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	235
BsuTUI	ATCGAT	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	334, 580
BtsIMutI	CAGTG	2 cut(s)	30, 463
Cac8I	GCNNGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	285
ClaI	ATCGAT	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	337
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	4 cut(s)	128, 307, 325, 334
CviJI	RGCY	7 cut(s)	10, 198, 314, 426, 553, 610, 614
CviKI_1	RGCY	7 cut(s)	10, 198, 314, 426, 553, 610, 614
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	2 cut(s)	118, 530
DpnI	GATC	2 cut(s)	38, 234
DpnII	GATC	2 cut(s)	36, 232
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	131, 310, 328, 337
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	4 cut(s)	127, 306, 324, 333
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	196, 315, 593, 605, 608
FokI	GGATG	2 cut(s)	341, 587
Fsp4HI	GCNGC	5 cut(s)	196, 315, 593, 605, 608
FspBI	CTAG	5 cut(s)	11, 138, 167, 509, 611
GluI	GCNGC	5 cut(s)	196, 315, 593, 605, 608
GsuI	CTGGAG	1 cut(s)	461
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	4 cut(s)	131, 310, 328, 337
HinfI	GANTC	3 cut(s)	77, 512, 521
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	2 cut(s)	275, 448
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188III	TCNNGA	4 cut(s)	230, 398, 478, 509
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	3 cut(s)	25, 95, 467
HpyCH4IV	ACGT	2 cut(s)	279, 438
HpyCH4V	TGCA	7 cut(s)	195, 218, 317, 350, 359, 499, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 601
HpyF3I	CTNAG	2 cut(s)	118, 530
HpySE526I	ACGT	2 cut(s)	279, 438
Hsp92II	CATG	4 cut(s)	131, 310, 328, 337
Kzo9I	GATC	2 cut(s)	36, 232
LmnI	GCTCC	1 cut(s)	558
LpnPI	CCDG	5 cut(s)	44, 122, 215, 299, 491
Lsp1109I	GCAGC	4 cut(s)	207, 301, 604, 616
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	5 cut(s)	11, 138, 167, 509, 611
MaeII	ACGT	2 cut(s)	279, 438
MaeIII	GTNAC	2 cut(s)	161, 439
MalI	GATC	2 cut(s)	38, 234
MboI	GATC	2 cut(s)	36, 232
MboII	GAAGA	3 cut(s)	45, 115, 516
MluCI	AATT	1 cut(s)	391
MmeI	TCCRAC	2 cut(s)	127, 346
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	2 cut(s)	209, 434
MspI	CCGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 601
NcoI	CCATGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	2 cut(s)	36, 232
NheI	GCTAGC	1 cut(s)	610
NlaIII	CATG	4 cut(s)	131, 310, 328, 337
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PfeI	GAWTC	3 cut(s)	77, 512, 521
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	5 cut(s)	197, 316, 594, 606, 609
PscI	ACATGT	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	209, 434
SatI	GCNGC	5 cut(s)	196, 315, 593, 605, 608
Sau3AI	GATC	2 cut(s)	36, 232
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	516
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	5 cut(s)	11, 138, 167, 509, 611
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	3 cut(s)	25, 95, 467
TaiI	ACGT	2 cut(s)	282, 441
TaqI	TCGA	3 cut(s)	80, 235, 429
TasI	AATT	1 cut(s)	391
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	77, 512, 521
Tru1I	TTAA	2 cut(s)	209, 434
Tru9I	TTAA	2 cut(s)	209, 434
TscAI	CASTG	2 cut(s)	30, 470
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	5 cut(s)	195, 314, 592, 604, 607
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	313, 404, 591
TspRI	CASTG	2 cut(s)	30, 470
XapI	RAATTY	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	5 cut(s)	11, 138, 167, 509, 611
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.