Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

23524253 .. 23526112

Gene Structure 1860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g22110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGATCAGCTCGAGGCGACGACGACGAGCCCAGAATCCATGCCAAGAATGATAGCCTTCATGTCCTCCGTCCTCGAGCGGGTTTCCGAGTTCAACGACCTGAACCGGCGGTTTCACCCGACCCAGAGGCTGTCGGTCTTCCACTCCCTGACCACGCCCACCATCTCAATCCACAGTTACCTCCAGAGGATCTTCAAGTACGCCGATTGCAGCCCATCTTGCTTCATCGTCGCCTACGTCTACCTCGACCGGTTCACTCAGATGCAGCCATTGCTGCCCATCGATTCCTTCAATGTCCATCGCTTGCTCATCACCAGCGTCTTGGTCTCTGCAAAGTTCATGGACGACATTTACTACAACAATGCATTTTATGCCAGAGTTGGAGGGATCAGCACACAAGAGATGAACCTTCTTGAGGTGGACTTCTTGTTCGGATTAGGGTTCCAAATGAATGTGACGCCGGCGACATATTACACCTACTGCTCTTACCTTCAGAGAGAAATGCTGCTGCAATCTCCTCTACAATTTGCAGATTCTCCTGTGGATTTGGCAAGACGTTTAAAGCTTCACTGCTCCTTTGATGAAGATGAATCCACCCATCAAAAGCAGCTTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

208

Amino Acids

23.94

Weight (kDa)

5.63

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	35 - 150	4.1e-40	Cyclin
Cyclin_N	PF00134	59 - 152	6.3e-10	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	2 cut(s)	82, 112
AclWI	GGATC	2 cut(s)	200, 398
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	461
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	82, 418
AgeI	ACCGGT	1 cut(s)	252
AgsI	TTSAA	3 cut(s)	97, 199, 295
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
AluBI	AGCT	3 cut(s)	13, 568, 613
AluI	AGCT	3 cut(s)	13, 568, 613
Alw26I	GTCTC	1 cut(s)	334
AlwI	GGATC	2 cut(s)	200, 398
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	14, 77
ApeKI	GCWGC	6 cut(s)	213, 268, 277, 508, 511, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsiGI	ACCGGT	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	110, 307
AvaI	CYCGRG	2 cut(s)	14, 77
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	5 cut(s)	225, 264, 280, 495, 498
BccI	CCATC	5 cut(s)	173, 226, 290, 309, 609
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	334
BisI	GCNGC	6 cut(s)	214, 269, 278, 509, 512, 611
BlsI	GCNGC	6 cut(s)	215, 270, 279, 510, 513, 612
BmeT110I	CYCGRG	2 cut(s)	14, 77
BmiI	GGNNCC	1 cut(s)	446
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	437
Bsa29I	ATCGAT	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	461
BsaI	GGTCTC	1 cut(s)	334
BsaWI	WCCGGW	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 418
Bse118I	RCCGGY	3 cut(s)	108, 252, 463
Bse3DI	GCAATG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	82, 418
BseMI	GCAATG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	510
BseXI	GCAGC	5 cut(s)	225, 264, 280, 495, 498
Bsh1285I	CGRYCG	1 cut(s)	253
BshTI	ACCGGT	1 cut(s)	252
BshVI	ATCGAT	1 cut(s)	285
BsiEI	CGRYCG	1 cut(s)	253
BsiHKCI	CYCGRG	2 cut(s)	14, 77
BsiSI	CCGG	3 cut(s)	109, 253, 464
BslI	CCNNNNNNNGG	2 cut(s)	82, 418
BsmAI	GTCTC	1 cut(s)	334
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	2 cut(s)	14, 77
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	3 cut(s)	7, 192, 390
BspACI	CCGC	2 cut(s)	82, 112
BspCNI	CTCAG	1 cut(s)	274
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	446
BspPI	GGATC	2 cut(s)	200, 398
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	272
BsrFI	RCCGGY	3 cut(s)	108, 252, 463
BssAI	RCCGGY	3 cut(s)	108, 252, 463
BssMI	GATC	3 cut(s)	7, 192, 390
BssNI	GRCGYC	1 cut(s)	461
Bst4CI	ACNGT	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	461
BstAPI	GCANNNNNTGC	2 cut(s)	274, 374
BstC8I	GCNNGC	3 cut(s)	308, 465, 615
BstDEI	CTNAG	1 cut(s)	261
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	10, 195, 393
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	3 cut(s)	7, 192, 390
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	222, 274, 277, 374
BstV1I	GCAGC	5 cut(s)	225, 264, 280, 495, 498
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	192
Bsu15I	ATCGAT	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	285
BtgZI	GCGATG	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	3 cut(s)	308, 465, 615
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	3 cut(s)	108, 252, 463
ClaI	ATCGAT	1 cut(s)	285
CseI	GACGC	2 cut(s)	310, 469
Csp6I	GTAC	1 cut(s)	202
CspAI	ACCGGT	1 cut(s)	252
CviAII	CATG	3 cut(s)	43, 64, 343
CviJI	RGCY	9 cut(s)	5, 13, 33, 59, 133, 216, 271, 568, 613
CviKI_1	RGCY	9 cut(s)	5, 13, 33, 59, 133, 216, 271, 568, 613
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	3 cut(s)	9, 194, 392
DpnII	GATC	3 cut(s)	7, 192, 390
DraI	TTTAAA	1 cut(s)	564
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	479
Eco88I	CYCGRG	2 cut(s)	14, 77
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	3 cut(s)	46, 67, 346
FaiI	YATR	5 cut(s)	44, 65, 344, 375, 472
FatI	CATG	3 cut(s)	42, 63, 342
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	6 cut(s)	214, 269, 278, 509, 512, 611
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	6 cut(s)	214, 269, 278, 509, 512, 611
GluI	GCNGC	6 cut(s)	214, 269, 278, 509, 512, 611
GsuI	CTGGAG	1 cut(s)	170
HapII	CCGG	3 cut(s)	109, 253, 464
HgaI	GACGC	2 cut(s)	310, 469
Hin1I	GRCGYC	1 cut(s)	461
Hin1II	CATG	3 cut(s)	46, 67, 346
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	4 cut(s)	38, 287, 536, 593
HpaII	CCGG	3 cut(s)	109, 253, 464
HphI	GGTGA	2 cut(s)	110, 307
Hpy166II	GTNNAC	3 cut(s)	244, 258, 424
Hpy188I	TCNGA	4 cut(s)	91, 264, 437, 498
Hpy188III	TCNNGA	2 cut(s)	187, 416
Hpy8I	GTNNAC	3 cut(s)	244, 258, 424
Hpy99I	CGWCG	4 cut(s)	25, 28, 31, 236
HpyAV	CCTTC	4 cut(s)	70, 301, 422, 503
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4IV	ACGT	2 cut(s)	240, 559
HpyCH4V	TGCA	6 cut(s)	213, 268, 335, 368, 514, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	222, 274, 277, 374
HpyF3I	CTNAG	1 cut(s)	261
HpySE526I	ACGT	2 cut(s)	240, 559
Hsp92I	GRCGYC	1 cut(s)	461
Hsp92II	CATG	3 cut(s)	46, 67, 346
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 192, 390
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	5 cut(s)	225, 264, 280, 495, 498
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	2 cut(s)	240, 559
MaeIII	GTNAC	2 cut(s)	179, 457
MalI	GATC	3 cut(s)	9, 194, 392
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	3 cut(s)	7, 192, 390
MboII	GAAGA	3 cut(s)	133, 187, 599
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	364
Mph1103I	ATGCAT	1 cut(s)	370
MreI	CGCCGGCG	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	2 cut(s)	563, 622
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	3 cut(s)	109, 253, 464
MwoI	GCNNNNNNNGC	4 cut(s)	222, 274, 277, 374
NaeI	GCCGGC	1 cut(s)	465
NdeII	GATC	3 cut(s)	7, 192, 390
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	46, 67, 346
NlaIV	GGNNCC	1 cut(s)	446
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	370
PaeR7I	CTCGAG	2 cut(s)	14, 77
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 246
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	38, 287, 536, 593
PinAI	ACCGGT	1 cut(s)	252
PkrI	GCNGC	6 cut(s)	215, 270, 279, 510, 513, 612
PspN4I	GGNNCC	1 cut(s)	446
PspXI	VCTCGAGB	2 cut(s)	14, 77
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	563, 622
SatI	GCNGC	6 cut(s)	214, 269, 278, 509, 512, 611
Sau3AI	GATC	3 cut(s)	7, 192, 390
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	1 cut(s)	255
Sfr274I	CTCGAG	2 cut(s)	14, 77
SgrAI	CRCCGGYG	1 cut(s)	463
SlaI	CTCGAG	2 cut(s)	14, 77
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	3 cut(s)	14, 77, 416
SmoI	CTYRAG	3 cut(s)	14, 77, 416
Sse9I	AATT	1 cut(s)	527
SsiI	CCGC	2 cut(s)	82, 112
TaaI	ACNGT	1 cut(s)	179
TaiI	ACGT	2 cut(s)	243, 562
TaqI	TCGA	4 cut(s)	15, 78, 249, 285
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	527
TfiI	GAWTC	4 cut(s)	38, 287, 536, 593
Tru1I	TTAA	2 cut(s)	563, 622
Tru9I	TTAA	2 cut(s)	563, 622
TscAI	CASTG	1 cut(s)	578
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	6 cut(s)	213, 268, 277, 508, 511, 610
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	7 cut(s)	52, 217, 331, 422, 467, 600, 606
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	416
XhoI	CTCGAG	2 cut(s)	14, 77
XmiI	GTMKAC	1 cut(s)	243
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.