Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

27504001 .. 27505966

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G271100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTGATCAGGTTGAGAGCACTAGCCCAGAGGCCATGCCAAGAATGATAGACTTCATGTCCTCAGTTCTCGAGCGAGTGGCCAAATCCAACGATCTGAGCCGGGGGTTCGAGCCGACCCAGAGGCTGTCGCTTTTCCACAGCCTCACCACACCCACCATTACAATCCACAGCTACCTCCAGAGGATCTTCAAGTACGCAGATTGCAGCCCCTCTTGCTTCGTCGTTGCCTACGTCTACCTCGACCGCTTCACTCAGACGCAGCCATTGTTGCCTATCGATTCCTTCAATGTCCACCGCTTGCTCATCGCCAGCGTCTTGGTCTCTGCAAAGTTCATGGATGACATATATTACAACAATGCCTATTATGCTAGAGTTGGAGGGATCAGCACAGCAGAGATGAACCTTCTTGAGGTGGACTTCTTGTTTGGTTTGGGCTTCCAATTGAATGTCACACCTGCAACTTTTTACACCTACTGTTCTTATCTTCAAAGAGAAATGTTGTTGCAATCTCCTCTGCATGTAGCAGAATCTCCTCTGAATTTGGCCAGACGTCTAAAGCTTCATTGCTCCTTCAATGAAGATGAATCCGCCCATCAAAAACAGCTTGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

206

Amino Acids

23.39

Weight (kDa)

5.83

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	466
AatII	GACGTC	1 cut(s)	556
Acc36I	ACCTGC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	3 cut(s)	247, 298, 591
AclWI	GGATC	2 cut(s)	194, 392
AcoI	YGGCCR	2 cut(s)	81, 546
AcsI	RAATTY	1 cut(s)	541
AcyI	GRCGYC	1 cut(s)	553
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	5 cut(s)	193, 289, 448, 491, 577
AhdI	GACNNNNNGTC	1 cut(s)	58
AluBI	AGCT	3 cut(s)	174, 562, 607
AluI	AGCT	3 cut(s)	174, 562, 607
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	328
AlwI	GGATC	2 cut(s)	194, 392
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	33, 81, 546
ApeKI	GCWGC	2 cut(s)	207, 262
ApoI	RAATTY	1 cut(s)	541
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AsuC2I	CCSGG	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	139
AvaI	CYCGRG	1 cut(s)	71
BalI	TGGCCA	2 cut(s)	83, 548
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	219, 274
BccI	CCATC	1 cut(s)	603
BclI	TGATCA	1 cut(s)	7
BcnI	CCSGG	1 cut(s)	104
BcoDI	GTCTC	1 cut(s)	328
BfaI	CTAG	2 cut(s)	24, 372
BfuAI	ACCTGC	1 cut(s)	466
BisI	GCNGC	2 cut(s)	208, 263
BlsI	GCNGC	2 cut(s)	209, 264
Bme1390I	CCNGG	1 cut(s)	104
BmeRI	GACNNNNNGTC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	104
BpmI	CTGGAG	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	104
Bsa29I	ATCGAT	1 cut(s)	279
BsaHI	GRCGYC	1 cut(s)	553
BsaI	GGTCTC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	565
BseCI	ATCGAT	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	3 cut(s)	78, 89, 269
BseRI	GAGGAG	2 cut(s)	504, 525
BseXI	GCAGC	2 cut(s)	219, 274
Bsh1285I	CGRYCG	1 cut(s)	247
BshFI	GGCC	3 cut(s)	35, 83, 548
BshVI	ATCGAT	1 cut(s)	279
BsiEI	CGRYCG	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	1 cut(s)	103
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	328
BsnI	GGCC	3 cut(s)	35, 83, 548
Bso31I	GGTCTC	1 cut(s)	328
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	4 cut(s)	7, 94, 186, 384
BspACI	CCGC	3 cut(s)	247, 298, 591
BspANI	GGCC	3 cut(s)	35, 83, 548
BspCNI	CTCAG	3 cut(s)	77, 90, 268
BspDI	ATCGAT	1 cut(s)	279
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	2 cut(s)	194, 392
BspTNI	GGTCTC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	4 cut(s)	7, 94, 186, 384
BssNI	GRCGYC	1 cut(s)	553
Bst4CI	ACNGT	1 cut(s)	479
BstACI	GRCGYC	1 cut(s)	553
BstC8I	GCNNGC	3 cut(s)	302, 313, 609
BstDEI	CTNAG	3 cut(s)	64, 98, 255
BstENI	CCTNNNNNAGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	4 cut(s)	10, 97, 189, 387
BstMAI	GTCTC	1 cut(s)	328
BstMBI	GATC	4 cut(s)	7, 94, 186, 384
BstMCI	CGRYCG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 271, 368
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	219, 274
BstX2I	RGATCY	1 cut(s)	186
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	279
BsuRI	GGCC	3 cut(s)	35, 83, 548
BsuTUI	ATCGAT	1 cut(s)	279
BtgZI	GCGATG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	346
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	3 cut(s)	302, 313, 609
CaiI	CAGNNNCTG	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	279
CseI	GACGC	2 cut(s)	268, 304
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	37, 58, 337, 521
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	3 cut(s)	64, 98, 255
DpnI	GATC	4 cut(s)	9, 96, 188, 386
DpnII	GATC	4 cut(s)	7, 94, 186, 384
DriI	GACNNNNNGTC	1 cut(s)	58
EaeI	YGGCCR	2 cut(s)	81, 546
Eam1105I	GACNNNNNGTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	580
Eco31I	GGTCTC	1 cut(s)	328
Eco88I	CYCGRG	1 cut(s)	71
EcoNI	CCTNNNNNAGG	1 cut(s)	410
FaeI	CATG	4 cut(s)	40, 61, 340, 524
FaiI	YATR	7 cut(s)	38, 59, 338, 347, 349, 369, 522
FatI	CATG	4 cut(s)	36, 57, 336, 520
FbaI	TGATCA	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	208, 263
FokI	GGATG	1 cut(s)	353
Fsp4HI	GCNGC	2 cut(s)	208, 263
FspBI	CTAG	2 cut(s)	24, 372
GluI	GCNGC	2 cut(s)	208, 263
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	35, 83, 548
HapII	CCGG	1 cut(s)	103
HgaI	GACGC	2 cut(s)	268, 304
Hin1I	GRCGYC	1 cut(s)	553
Hin1II	CATG	4 cut(s)	40, 61, 340, 524
HindIII	AAGCTT	1 cut(s)	560
HinfI	GANTC	3 cut(s)	281, 530, 587
HpaII	CCGG	1 cut(s)	103
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	238, 295, 418
Hpy188I	TCNGA	3 cut(s)	99, 258, 540
Hpy188III	TCNNGA	3 cut(s)	71, 181, 410
Hpy8I	GTNNAC	3 cut(s)	238, 295, 418
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	295, 416, 583
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	2 cut(s)	234, 553
HpyCH4V	TGCA	5 cut(s)	207, 329, 461, 508, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 271, 368
HpyF3I	CTNAG	3 cut(s)	64, 98, 255
HpySE526I	ACGT	2 cut(s)	234, 553
Hsp92I	GRCGYC	1 cut(s)	553
Hsp92II	CATG	4 cut(s)	40, 61, 340, 524
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	7, 94, 186, 384
LmnI	GCTCC	1 cut(s)	575
LpnPI	CCDG	7 cut(s)	42, 116, 134, 194, 325, 471, 562
Lsp1109I	GCAGC	2 cut(s)	219, 274
MaeI	CTAG	2 cut(s)	24, 372
MaeII	ACGT	2 cut(s)	234, 553
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	4 cut(s)	9, 96, 188, 386
MboI	GATC	4 cut(s)	7, 94, 186, 384
MboII	GAAGA	3 cut(s)	181, 479, 593
MfeI	CAATTG	1 cut(s)	443
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	1 cut(s)	23
MlsI	TGGCCA	2 cut(s)	83, 548
MluCI	AATT	2 cut(s)	443, 541
MluNI	TGGCCA	2 cut(s)	83, 548
MmeI	TCCRAC	2 cut(s)	114, 358
Mox20I	TGGCCA	2 cut(s)	83, 548
MscI	TGGCCA	2 cut(s)	83, 548
Msp20I	TGGCCA	2 cut(s)	83, 548
MspI	CCGG	1 cut(s)	103
MspR9I	CCNGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	443
MwoI	GCNNNNNNNGC	3 cut(s)	216, 271, 368
NciI	CCSGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	7, 94, 186, 384
NlaIII	CATG	4 cut(s)	40, 61, 340, 524
NmuCI	GTSAC	1 cut(s)	451
NspI	RCATGY	1 cut(s)	524
PaeR7I	CTCGAG	1 cut(s)	71
PaqCI	CACCTGC	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	2 cut(s)	231, 240
PfeI	GAWTC	3 cut(s)	281, 530, 587
PkrI	GCNGC	2 cut(s)	209, 264
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SatI	GCNGC	2 cut(s)	208, 263
Sau3AI	GATC	4 cut(s)	7, 94, 186, 384
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	23
Sfr274I	CTCGAG	1 cut(s)	71
SlaI	CTCGAG	1 cut(s)	71
SmlI	CTYRAG	2 cut(s)	71, 410
SmoI	CTYRAG	2 cut(s)	71, 410
Sse9I	AATT	2 cut(s)	443, 541
SsiI	CCGC	3 cut(s)	247, 298, 591
SspMI	CTAG	2 cut(s)	24, 372
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	2 cut(s)	237, 556
TaqI	TCGA	4 cut(s)	72, 111, 243, 279
TasI	AATT	2 cut(s)	443, 541
TfiI	GAWTC	3 cut(s)	281, 530, 587
TseFI	GTSAC	1 cut(s)	451
TseI	GCWGC	2 cut(s)	207, 262
Tsp45I	GTSAC	1 cut(s)	451
TspDTI	ATGAA	6 cut(s)	46, 325, 416, 554, 594, 600
XagI	CCTNNNNNAGG	1 cut(s)	410
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	524
XhoI	CTCGAG	1 cut(s)	71
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	24, 372
ZraI	GACGTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.