Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

17867592 .. 17869590

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G121600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCAGAGCTAGAGAACCCAATAGTGATGACCAAGATCATCACATTCCTCTCATCTCTGGTTCAAAGGGTGGCTGAATCAAATGACATCAATCCATTCCAAACCCAGAGAATCTCAGTCTTCCATGGCCTAACCAGGCCCACCATATCAATACAGAGCTATTTGGAGAGGATTTTCAAGTATGCCAATTGTAGCCCATCTTGCTTAATTGTTGCATATGTTTATCTGGATCGGTTTTCTCAGAGGCAACCAACTCTGCCCATCAATTCATACAACGTTCACCGGTTGCTGATTACTAGTGTCATGGTGGCTGCAAAGTTCATGGATGACATGTACTACAACAATGCTTATTATGCAAAAGTTGGAGGGATCAGCACAATAGAGATGAATTTTCTTGAAGTGGATTTCCTATTTGGTTTGAGCTTCAACTTAAATGTGACCCCTTCAACCTTCACCACCTACTGCTCCTACCTCCAAAGAGAAATGCTCCTCTTGCAGCCTCCTCTAGATTCTGCAGATTCTTCTCTTAGTTTAGGCAAATCACTAAAGCTCCATTTGTGCTTTGATGAGGAGGAAGCCTCCCATCAGCCACAGCAGCTAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

203

Amino Acids

23.02

Weight (kDa)

5.52

Isoelectric Point (pI)

41.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	276
AclWI	GGATC	2 cut(s)	237, 377
AcsI	RAATTY	1 cut(s)	388
AfaI	GTAC	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	330
AgeI	ACCGGT	1 cut(s)	282
AgsI	TTSAA	5 cut(s)	65, 178, 398, 427, 447
AhlI	ACTAGT	1 cut(s)	296
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	6 cut(s)	10, 159, 423, 550, 598, 602
AluI	AGCT	6 cut(s)	10, 159, 423, 550, 598, 602
AlwI	GGATC	2 cut(s)	237, 377
AoxI	GGCC	2 cut(s)	127, 137
ApeKI	GCWGC	3 cut(s)	311, 496, 595
ApoI	RAATTY	1 cut(s)	388
AsiGI	ACCGGT	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	272, 445
AsuNHI	GCTAGC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	298, 508
BccI	CCATC	3 cut(s)	205, 269, 591
BciT130I	CCWGG	1 cut(s)	136
BcuI	ACTAGT	1 cut(s)	296
BfaI	CTAG	4 cut(s)	11, 297, 506, 599
BfmI	CTRYAG	1 cut(s)	513
BisI	GCNGC	3 cut(s)	312, 497, 596
BlsI	GCNGC	3 cut(s)	313, 498, 597
Bme1390I	CCNGG	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	136
BmtI	GCTAGC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	4 cut(s)	471, 503, 563, 595
BsaJI	CCNNGG	1 cut(s)	124
BsaWI	WCCGGW	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bse118I	RCCGGY	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	129, 254
BseRI	GAGGAG	3 cut(s)	479, 492, 584
BseXI	GCAGC	2 cut(s)	298, 508
BshFI	GGCC	2 cut(s)	129, 139
BshTI	ACCGGT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	283
BsnI	GGCC	2 cut(s)	129, 139
Bsp143I	GATC	3 cut(s)	36, 229, 369
Bsp19I	CCATGG	1 cut(s)	124
BspANI	GGCC	2 cut(s)	129, 139
BspCNI	CTCAG	2 cut(s)	128, 253
BspMAI	CTGCAG	1 cut(s)	517
BspOI	GCTAGC	1 cut(s)	602
BspPI	GGATC	2 cut(s)	237, 377
BsrFI	RCCGGY	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	3 cut(s)	36, 229, 369
BssT1I	CCWWGG	1 cut(s)	124
Bst2UI	CCWGG	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	3 cut(s)	115, 240, 527
BstDSI	CCRYGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	331
BstKTI	GATC	3 cut(s)	39, 232, 372
BstMBI	GATC	3 cut(s)	36, 229, 369
BstMWI	GCNNNNNNNGC	4 cut(s)	201, 353, 493, 595
BstNI	CCWGG	1 cut(s)	136
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	513
BstV1I	GCAGC	2 cut(s)	298, 508
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	129, 139
BtgI	CCRYGG	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	600
Cfr10I	RCCGGY	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	334
CspAI	ACCGGT	1 cut(s)	282
CviAII	CATG	4 cut(s)	125, 304, 322, 331
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	115, 240, 527
DpnI	GATC	3 cut(s)	38, 231, 371
DpnII	GATC	3 cut(s)	36, 229, 369
Eco130I	CCWWGG	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	134
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
FaeI	CATG	4 cut(s)	128, 307, 325, 334
FatI	CATG	4 cut(s)	124, 303, 321, 330
FauNDI	CATATG	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	312, 497, 596
FokI	GGATG	1 cut(s)	338
Fsp4HI	GCNGC	3 cut(s)	312, 497, 596
FspBI	CTAG	4 cut(s)	11, 297, 506, 599
GluI	GCNGC	3 cut(s)	312, 497, 596
HaeIII	GGCC	2 cut(s)	129, 139
HapII	CCGG	1 cut(s)	283
Hin1II	CATG	4 cut(s)	128, 307, 325, 334
HinfI	GANTC	4 cut(s)	77, 111, 509, 518
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	2 cut(s)	272, 445
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	3 cut(s)	227, 395, 506
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	453, 460
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	5 cut(s)	215, 314, 356, 496, 515
HpyF10VI	GCNNNNNNNGC	4 cut(s)	201, 353, 493, 595
HpyF3I	CTNAG	3 cut(s)	115, 240, 527
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	128, 307, 325, 334
Kzo9I	GATC	3 cut(s)	36, 229, 369
LmnI	GCTCC	3 cut(s)	470, 492, 555
LpnPI	CCDG	6 cut(s)	44, 119, 121, 148, 212, 296
Lsp1109I	GCAGC	2 cut(s)	298, 508
MaeI	CTAG	4 cut(s)	11, 297, 506, 599
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	38, 231, 371
MboI	GATC	3 cut(s)	36, 229, 369
MboII	GAAGA	2 cut(s)	112, 513
MfeI	CAATTG	1 cut(s)	187
MluCI	AATT	4 cut(s)	187, 207, 265, 388
MmeI	TCCRAC	1 cut(s)	343
MseI	TTAA	2 cut(s)	206, 431
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	136
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	136
MwoI	GCNNNNNNNGC	4 cut(s)	201, 353, 493, 595
NcoI	CCATGG	1 cut(s)	124
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	3 cut(s)	36, 229, 369
NheI	GCTAGC	1 cut(s)	598
NlaIII	CATG	4 cut(s)	128, 307, 325, 334
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	334
PciI	ACATGT	1 cut(s)	330
PfeI	GAWTC	4 cut(s)	77, 111, 509, 518
PinAI	ACCGGT	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	313, 498, 597
PscI	ACATGT	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
PspPI	GGNCC	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	517
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	206, 431
SatI	GCNGC	3 cut(s)	312, 497, 596
Sau3AI	GATC	3 cut(s)	36, 229, 369
Sau96I	GGNCC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	136
SfcI	CTRYAG	1 cut(s)	513
SpeI	ACTAGT	1 cut(s)	296
Sse9I	AATT	4 cut(s)	187, 207, 265, 388
SspMI	CTAG	4 cut(s)	11, 297, 506, 599
StyD4I	CCNGG	1 cut(s)	134
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	279
TasI	AATT	4 cut(s)	187, 207, 265, 388
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	4 cut(s)	77, 111, 509, 518
Tru1I	TTAA	2 cut(s)	206, 431
Tru9I	TTAA	2 cut(s)	206, 431
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	3 cut(s)	311, 496, 595
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	3 cut(s)	258, 310, 401
XapI	RAATTY	1 cut(s)	388
XbaI	TCTAGA	1 cut(s)	505
XceI	RCATGY	1 cut(s)	334
XspI	CTAG	4 cut(s)	11, 297, 506, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.