Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Forward (+)

25528892 .. 25530619

Gene Structure 1728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1219700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCAGAGCTAGAGAGCCCAAGAGTGATGACAAAGATCATAACTTTTCTCTCTTCTCTGGTTCAAAGAGTGGCGGAATCGAATGACCTCAACAGCCATTTCCAACACCAGAAAATCTCAGTCTTCCATGGTCTAACTAGACCCACCATTTCAATACAGAACTACCTAGAGAGGATTTTCAAGTATGCCAATTGCAGCCCGTCTTGCTTAATTGTTGCGTACGTTTATCTGGATCGGTTTTCGCAGAGGCAACCCTCGTTGCCTATCAACTCATTCAACGTTCATCGGTTGCTGATTACGAGTGTCATGGTGGCTGCAAAGTTCATGGATGACATGTACTACAACAACGCATATTATGCAAAAGTTGGAGGAATAAGCACAATAGAGATGAATTTTCTTGAAGTGGATTTCCTGTTTGGTTTGAGCTTCAACTTAAACGTGACTCCCTCAACCTTCACCATCTACTGTTCATATCTCCAGAGAGAGATGCTTCTGTTGCAACCACCTCTAGAGTCTGCAGATTCTTCTCTTACTTTAGGCAAATCACCAAAGCTCCACTTGTGCTTTGATGAGGATGAAACCTCCCATCAGCAACAACAACAACAGCAGCAGCTAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

208

Amino Acids

23.75

Weight (kDa)

6.05

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	28 - 145	4e-41	Cyclin
Cyclin_N	PF00134	52 - 146	1.1e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	240
AcsI	RAATTY	1 cut(s)	391
AfaI	GTAC	2 cut(s)	221, 338
AflIII	ACRYGT	1 cut(s)	333
AgsI	TTSAA	6 cut(s)	65, 153, 181, 277, 401, 430
AluBI	AGCT	5 cut(s)	10, 426, 553, 613, 617
AluI	AGCT	5 cut(s)	10, 426, 553, 613, 617
AlwI	GGATC	1 cut(s)	240
ApeKI	GCWGC	4 cut(s)	195, 314, 607, 610
ApoI	RAATTY	1 cut(s)	391
AsuHPI	GGTGA	2 cut(s)	448, 537
AsuNHI	GCTAGC	1 cut(s)	613
BanII	GRGCYC	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	207, 301, 619
BccI	CCATC	2 cut(s)	467, 594
BfaI	CTAG	5 cut(s)	11, 138, 167, 509, 614
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	4 cut(s)	196, 315, 608, 611
BlsI	GCNGC	4 cut(s)	197, 316, 609, 612
BmsI	GCATC	1 cut(s)	477
BmtI	GCTAGC	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	2 cut(s)	334, 580
BseMII	CTCAG	1 cut(s)	132
BseXI	GCAGC	3 cut(s)	207, 301, 619
BsiWI	CGTACG	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	36, 232
Bsp19I	CCATGG	1 cut(s)	127
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	131
BspMAI	CTGCAG	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	617
BspPI	GGATC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	36, 232
BssT1I	CCWWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	615
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	334, 580
BstKTI	GATC	2 cut(s)	39, 235
BstMBI	GATC	2 cut(s)	36, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	204, 356, 496
BstNSI	RCATGY	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	3 cut(s)	207, 301, 619
BstV2I	GAAGAC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	334, 580
Cac8I	GCNNGC	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	220, 337
CviAII	CATG	4 cut(s)	128, 307, 325, 334
CviJI	RGCY	9 cut(s)	10, 18, 96, 198, 314, 426, 553, 613, 617
CviKI_1	RGCY	9 cut(s)	10, 18, 96, 198, 314, 426, 553, 613, 617
CviQI	GTAC	2 cut(s)	220, 337
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	38, 234
DpnII	GATC	2 cut(s)	36, 232
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	20
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	4 cut(s)	131, 310, 328, 337
FaiI	YATR	9 cut(s)	41, 129, 186, 308, 326, 335, 352, 357, 472
FalI	AAGNNNNNCTT	2 cut(s)	542, 574
FatI	CATG	4 cut(s)	127, 306, 324, 333
Fnu4HI	GCNGC	4 cut(s)	196, 315, 608, 611
FokI	GGATG	2 cut(s)	341, 587
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	196, 315, 608, 611
FspBI	CTAG	5 cut(s)	11, 138, 167, 509, 614
GluI	GCNGC	4 cut(s)	196, 315, 608, 611
GsuI	CTGGAG	1 cut(s)	461
Hin1II	CATG	4 cut(s)	131, 310, 328, 337
HinfI	GANTC	4 cut(s)	77, 442, 512, 521
HphI	GGTGA	2 cut(s)	448, 537
Hpy188III	TCNNGA	4 cut(s)	230, 398, 478, 509
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	3 cut(s)	222, 279, 438
HpyCH4V	TGCA	5 cut(s)	195, 317, 359, 499, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	204, 356, 496
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	3 cut(s)	222, 279, 438
Hsp92II	CATG	4 cut(s)	131, 310, 328, 337
Kzo9I	GATC	2 cut(s)	36, 232
LmnI	GCTCC	1 cut(s)	558
LpnPI	CCDG	5 cut(s)	44, 122, 215, 425, 491
Lsp1109I	GCAGC	3 cut(s)	207, 301, 619
LweI	GCATC	1 cut(s)	477
MaeI	CTAG	5 cut(s)	11, 138, 167, 509, 614
MaeII	ACGT	3 cut(s)	222, 279, 438
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	38, 234
MboI	GATC	2 cut(s)	36, 232
MboII	GAAGA	3 cut(s)	45, 115, 516
MfeI	CAATTG	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	3 cut(s)	190, 210, 391
MlyI	GAGTC	2 cut(s)	436, 521
MmeI	TCCRAC	2 cut(s)	127, 346
MnlI	CCTC	9 cut(s)	98, 165, 240, 265, 362, 457, 516, 565, 592
MseI	TTAA	2 cut(s)	209, 434
MunI	CAATTG	1 cut(s)	190
MwoI	GCNNNNNNNGC	3 cut(s)	204, 356, 496
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	36, 232
NheI	GCTAGC	1 cut(s)	613
NlaIII	CATG	4 cut(s)	131, 310, 328, 337
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	2 cut(s)	77, 521
Pfl23II	CGTACG	1 cut(s)	219
PkrI	GCNGC	4 cut(s)	197, 316, 609, 612
PleI	GAGTC	2 cut(s)	436, 520
PpsI	GAGTC	2 cut(s)	436, 520
PscI	ACATGT	1 cut(s)	333
Psp1406I	AACGTT	1 cut(s)	279
PspLI	CGTACG	1 cut(s)	219
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	2 cut(s)	221, 338
RsaNI	GTAC	2 cut(s)	220, 337
SaqAI	TTAA	2 cut(s)	209, 434
SatI	GCNGC	4 cut(s)	196, 315, 608, 611
Sau3AI	GATC	2 cut(s)	36, 232
SchI	GAGTC	2 cut(s)	436, 521
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	477
SfcI	CTRYAG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	190, 210, 391
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	5 cut(s)	11, 138, 167, 509, 614
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	3 cut(s)	225, 282, 441
TaqI	TCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	190, 210, 391
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	77, 521
Tru1I	TTAA	2 cut(s)	209, 434
Tru9I	TTAA	2 cut(s)	209, 434
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	195, 314, 607, 610
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	272, 313, 404, 459, 591
XapI	RAATTY	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	5 cut(s)	11, 138, 167, 509, 614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.