Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Reverse (-)

17559307 .. 17561125

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g18680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTGAGCAGCTCGAGACGTCGACGACGAGCCCAGAATCCATGCCAAGAATAATAGCCTTCATGTCCTCCGTCCTCGAGCGGGTTTCCAACTCCAATGACCTGAACCGGCGGTTAGAGCCGACGCAGAAGCTGTCGGTCTTCCACTCCCTGACCACGCCCACCATTTCAATCCACAGCTACCTGCAGAGGATCTTCAAGTACGCCGACTGCAGCCCATCTTGCTTCGTCGTCGCCTACGTATATCTTGACCGTTTCACCCAGATGCAGCCATTGCTGCCCATTGATTCTTTCAGCGTTCACCGCTTGCTCATCACCAGCGTCTTGGTCTCTGCAAAGTTCATGGACGACATTTACTACAACAATGCATTTTATGCCAGAGTTGGAGGGATCAGCACGCAAGAGATGAACCTTCTTGAGGTGGACTTCTTGTTCGGATTAAGGTTCAAAATGAACGTGATGCCGGCGACGTATTACACCTACTGCACTTACCTTCAGAGAGAAATGCTGCTGCAATATCCTCTACAATTTGCAGATTCTCCTGTGGATTTGGCAAGACGTTTGAAGCTTCACTGCTCCTTTGATGAAGATGAATCCACCCATCAAAAGCAGCTTGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

208

Amino Acids

23.98

Weight (kDa)

5.94

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	192
AccBSI	CCGCTC	1 cut(s)	82
AccI	GTMKAC	1 cut(s)	23
AciI	CCGC	3 cut(s)	82, 112, 304
AclWI	GGATC	2 cut(s)	200, 398
AcuI	CTGAAG	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	82, 418
AgsI	TTSAA	4 cut(s)	171, 199, 448, 565
AloI	GAACNNNNNNTCC	2 cut(s)	416, 448
AluBI	AGCT	5 cut(s)	13, 133, 180, 568, 613
AluI	AGCT	5 cut(s)	13, 133, 180, 568, 613
Alw26I	GTCTC	2 cut(s)	11, 334
AlwI	GGATC	2 cut(s)	200, 398
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	2 cut(s)	14, 77
ApeKI	GCWGC	7 cut(s)	10, 213, 268, 277, 508, 511, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	416, 448
AsuHPI	GGTGA	3 cut(s)	250, 293, 307
AvaI	CYCGRG	2 cut(s)	14, 77
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	133
BbvI	GCAGC	6 cut(s)	22, 225, 264, 280, 495, 498
BccI	CCATC	2 cut(s)	226, 609
BcoDI	GTCTC	2 cut(s)	11, 334
BfmI	CTRYAG	2 cut(s)	185, 211
BfuAI	ACCTGC	1 cut(s)	192
BisI	GCNGC	7 cut(s)	11, 214, 269, 278, 509, 512, 611
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	7 cut(s)	12, 215, 270, 279, 510, 513, 612
BmeT110I	CYCGRG	2 cut(s)	14, 77
BmsI	GCATC	2 cut(s)	255, 450
BpiI	GAAGAC	1 cut(s)	133
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	334
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 418
Bse118I	RCCGGY	2 cut(s)	108, 463
Bse3DI	GCAATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	2 cut(s)	82, 418
BseMI	GCAATG	1 cut(s)	272
BseXI	GCAGC	6 cut(s)	22, 225, 264, 280, 495, 498
BsgI	GTGCAG	1 cut(s)	469
BsiHKCI	CYCGRG	2 cut(s)	14, 77
BsiSI	CCGG	2 cut(s)	109, 464
BslI	CCNNNNNNNGG	2 cut(s)	82, 418
BsmAI	GTCTC	2 cut(s)	11, 334
BsmBI	CGTCTC	1 cut(s)	11
Bso31I	GGTCTC	1 cut(s)	334
BsoBI	CYCGRG	2 cut(s)	14, 77
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	2 cut(s)	192, 390
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	3 cut(s)	82, 112, 304
BspMAI	CTGCAG	2 cut(s)	189, 215
BspMI	ACCTGC	1 cut(s)	192
BspPI	GGATC	2 cut(s)	200, 398
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	272
BsrFI	RCCGGY	2 cut(s)	108, 463
BssAI	RCCGGY	2 cut(s)	108, 463
BssMI	GATC	2 cut(s)	192, 390
BssNI	GRCGYC	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	254
BstACI	GRCGYC	1 cut(s)	20
BstAPI	GCANNNNNTGC	2 cut(s)	274, 374
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	4 cut(s)	308, 398, 465, 615
BstDEI	CTNAG	1 cut(s)	6
BstENI	CCTNNNNNAGG	1 cut(s)	416
BstKTI	GATC	2 cut(s)	195, 393
BstMAI	GTCTC	2 cut(s)	11, 334
BstMBI	GATC	2 cut(s)	192, 390
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 222, 274, 277, 303, 374
BstSFI	CTRYAG	2 cut(s)	185, 211
BstSNI	TACGTA	1 cut(s)	241
BstV1I	GCAGC	6 cut(s)	22, 225, 264, 280, 495, 498
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	192
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	571
BtsIMutI	CAGTG	1 cut(s)	571
BveI	ACCTGC	1 cut(s)	192
Cac8I	GCNNGC	4 cut(s)	308, 398, 465, 615
CaiI	CAGNNNCTG	1 cut(s)	133
Cfr10I	RCCGGY	2 cut(s)	108, 463
CseI	GACGC	2 cut(s)	133, 310
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	43, 64, 343
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	194, 392
DpnII	GATC	2 cut(s)	192, 390
Eco105I	TACGTA	1 cut(s)	241
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	479
Eco88I	CYCGRG	2 cut(s)	14, 77
EcoNI	CCTNNNNNAGG	1 cut(s)	416
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	11
FaeI	CATG	3 cut(s)	46, 67, 346
FaiI	YATR	5 cut(s)	44, 65, 244, 344, 375
FatI	CATG	3 cut(s)	42, 63, 342
FauI	CCCGC	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	7 cut(s)	11, 214, 269, 278, 509, 512, 611
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	11, 214, 269, 278, 509, 512, 611
GluI	GCNGC	7 cut(s)	11, 214, 269, 278, 509, 512, 611
HapII	CCGG	2 cut(s)	109, 464
HgaI	GACGC	2 cut(s)	133, 310
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	3 cut(s)	46, 67, 346
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	4 cut(s)	38, 287, 536, 593
HpaII	CCGG	2 cut(s)	109, 464
HphI	GGTGA	3 cut(s)	250, 293, 307
Hpy166II	GTNNAC	3 cut(s)	24, 301, 424
Hpy188I	TCNGA	2 cut(s)	437, 498
Hpy188III	TCNNGA	3 cut(s)	16, 248, 416
Hpy8I	GTNNAC	3 cut(s)	24, 301, 424
Hpy99I	CGWCG	7 cut(s)	25, 28, 31, 127, 233, 236, 472
HpyAV	CCTTC	3 cut(s)	70, 422, 503
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4IV	ACGT	5 cut(s)	20, 240, 456, 470, 559
HpyCH4V	TGCA	8 cut(s)	187, 213, 268, 335, 368, 486, 514, 533
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 222, 274, 277, 303, 374
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	5 cut(s)	20, 240, 456, 470, 559
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	3 cut(s)	46, 67, 346
KroI	GCCGGC	1 cut(s)	463
KroNI	GCCGGC	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	192, 390
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	6 cut(s)	22, 225, 264, 280, 495, 498
LweI	GCATC	2 cut(s)	255, 450
MaeII	ACGT	5 cut(s)	20, 240, 456, 470, 559
MalI	GATC	2 cut(s)	194, 392
MbiI	CCGCTC	1 cut(s)	82
MboI	GATC	2 cut(s)	192, 390
MboII	GAAGA	3 cut(s)	133, 187, 599
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	1 cut(s)	527
MmeI	TCCRAC	2 cut(s)	114, 364
MnlI	CCTC	6 cut(s)	79, 86, 183, 380, 412, 531
Mph1103I	ATGCAT	1 cut(s)	370
MroNI	GCCGGC	1 cut(s)	463
MseI	TTAA	2 cut(s)	440, 622
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	109, 464
MwoI	GCNNNNNNNGC	6 cut(s)	118, 222, 274, 277, 303, 374
NaeI	GCCGGC	1 cut(s)	465
NdeII	GATC	2 cut(s)	192, 390
NgoMIV	GCCGGC	1 cut(s)	463
NlaIII	CATG	3 cut(s)	46, 67, 346
NsiI	ATGCAT	1 cut(s)	370
PaeR7I	CTCGAG	2 cut(s)	14, 77
PcsI	WCGNNNNNNNCGW	2 cut(s)	26, 237
PdiI	GCCGGC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	38, 287, 536, 593
PkrI	GCNGC	7 cut(s)	12, 215, 270, 279, 510, 513, 612
Ppu21I	YACGTR	1 cut(s)	241
PspXI	VCTCGAGB	1 cut(s)	77
PstI	CTGCAG	2 cut(s)	189, 215
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	192
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	263
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	2 cut(s)	440, 622
SatI	GCNGC	7 cut(s)	11, 214, 269, 278, 509, 512, 611
Sau3AI	GATC	2 cut(s)	192, 390
SduI	GDGCHC	1 cut(s)	35
SfaNI	GCATC	2 cut(s)	255, 450
SfcI	CTRYAG	2 cut(s)	185, 211
Sfr274I	CTCGAG	2 cut(s)	14, 77
SgrDI	CGTCGACG	1 cut(s)	22
SlaI	CTCGAG	2 cut(s)	14, 77
SmiMI	CAYNNNNRTG	1 cut(s)	263
SmlI	CTYRAG	3 cut(s)	14, 77, 416
SmoI	CTYRAG	3 cut(s)	14, 77, 416
SnaBI	TACGTA	1 cut(s)	241
Sse9I	AATT	1 cut(s)	527
SsiI	CCGC	3 cut(s)	82, 112, 304
TaaI	ACNGT	1 cut(s)	254
TaiI	ACGT	5 cut(s)	23, 243, 459, 473, 562
TaqI	TCGA	3 cut(s)	15, 23, 78
TaqII	GACCGA	1 cut(s)	127
TasI	AATT	1 cut(s)	527
TfiI	GAWTC	4 cut(s)	38, 287, 536, 593
Tru1I	TTAA	2 cut(s)	440, 622
Tru9I	TTAA	2 cut(s)	440, 622
TscAI	CASTG	1 cut(s)	578
TseI	GCWGC	7 cut(s)	10, 213, 268, 277, 508, 511, 610
TspDTI	ATGAA	6 cut(s)	52, 331, 422, 467, 600, 606
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	416
XhoI	CTCGAG	2 cut(s)	14, 77
XmiI	GTMKAC	1 cut(s)	23
ZraI	GACGTC	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.