FvH4_7g26790

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004193
Physical Location & Seq
Reverse (-)
20165221 .. 20166914
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26790.t1

Sequence Viewer

Length: 615 bp
ATGTCTGATGAGCTCGAGACCCCAGAAGCGATGCCAAGAATGATAGCTTTCCTCTCAGATGTGCTGGACAGGGTGGCCAAGTCCAACGACCTGAACAGGCGGCTCGACTCGCAGAAGCTCTCGGTGTTTCACTGCCTCACAAAACCCACAATCTCAATCCAGAGCTATTTGGAGAGGATTTTCAAGTATGCGGATTGTAGTCCCTCTTGTTTTGTGGTGGCCTATGTTTATCTGGACCGGTTCACACAAAGACAGAAGGCTTTGCCTATCAACTCGTTCAATGTTCATCGATTGCTCATCACCAGTGTCATGGTCTCTGCAAAGTTCATGGATGACATTTCTTACAACAATGCCTATTTTGCAAGAGTGGGAGGAATCAGCACTAAAGAGATGAACCTTCTTGAGATGGATTTCTTGTTCGGATTAGGCTTCGAACTAAACGTGACACCCGAAAACTTTATCACCTACTGTTCGTACCTACAAAGAGAAATGTTGCTGCAATCTCCTCCTCTACATGTAACAGACTCTCCTCTGAACTTGGCGAGCCGTCTGAAGCTTCATTGTTCTTTCAATGAAGATGAATCCACCCATCAAAAGCAGCTTGCTGCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

205

Amino Acids

23.4

Weight (kDa)

5.95

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 35 - 146 8.2e-41 Cyclin
Cyclin_N PF00134 53 - 147 2.1e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 100, 191
AcoI YGGCCR 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 1 cut(s) 476
AflIII ACRYGT 1 cut(s) 514
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 3 cut(s) 184, 280, 571
AloI GAACNNNNNNTCC 2 cut(s) 401, 433
AluBI AGCT 6 cut(s) 13, 47, 118, 165, 556, 601
AluI AGCT 6 cut(s) 13, 47, 118, 165, 556, 601
Alw21I GWGCWC 1 cut(s) 15
Alw26I GTCTC 2 cut(s) 11, 319
Ama87I CYCGRG 1 cut(s) 14
AoxI GGCC 2 cut(s) 75, 219
ApeKI GCWGC 3 cut(s) 496, 598, 605
AsiGI ACCGGT 1 cut(s) 237
AspS9I GGNCC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 292, 454
AsuII TTCGAA 1 cut(s) 432
AvaI CYCGRG 1 cut(s) 14
AvaII GGWCC 1 cut(s) 235
BalI TGGCCA 1 cut(s) 77
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BbvI GCAGC 3 cut(s) 483, 592, 610
BccI CCATC 2 cut(s) 400, 597
BceAI ACGGC 1 cut(s) 531
BcoDI GTCTC 2 cut(s) 11, 319
BfmI CTRYAG 1 cut(s) 606
BisI GCNGC 4 cut(s) 101, 497, 599, 606
BlsI GCNGC 4 cut(s) 102, 498, 600, 607
Bme18I GGWCC 1 cut(s) 235
BmeT110I CYCGRG 1 cut(s) 14
BmgT120I GGNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 21
Bpu14I TTCGAA 1 cut(s) 432
BpuEI CTTGAG 1 cut(s) 422
Bsa29I ATCGAT 1 cut(s) 289
BsaI GGTCTC 2 cut(s) 11, 319
BsaWI WCCGGW 1 cut(s) 237
BsaXI ACNNNNNCTCC 2 cut(s) 511, 541
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 303
BseCI ATCGAT 1 cut(s) 289
BseGI GGATG 1 cut(s) 337
BseMII CTCAG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 3 cut(s) 495, 498, 519
BseXI GCAGC 3 cut(s) 483, 592, 610
BshFI GGCC 2 cut(s) 77, 221
BshTI ACCGGT 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 289
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 238
BslFI GGGAC 1 cut(s) 186
BsmAI GTCTC 2 cut(s) 11, 319
BsmFI GGGAC 1 cut(s) 186
BsnI GGCC 2 cut(s) 77, 221
Bso31I GGTCTC 2 cut(s) 11, 319
BsoBI CYCGRG 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 432
Bsp1286I GDGCHC 1 cut(s) 15
BspACI CCGC 2 cut(s) 100, 191
BspANI GGCC 2 cut(s) 77, 221
BspCNI CTCAG 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 289
BspMAI CTGCAG 1 cut(s) 610
BspT104I TTCGAA 1 cut(s) 432
BspTNI GGTCTC 2 cut(s) 11, 319
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 303
BssAI RCCGGY 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 470
BstBI TTCGAA 1 cut(s) 432
BstC8I GCNNGC 2 cut(s) 544, 603
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 11, 319
BstMWI GCNNNNNNNGC 2 cut(s) 109, 359
BstNSI RCATGY 1 cut(s) 518
BstSFI CTRYAG 1 cut(s) 606
BstV1I GCAGC 3 cut(s) 483, 592, 610
BstXI CCANNNNNNTGG 1 cut(s) 310
Bsu15I ATCGAT 1 cut(s) 289
BsuRI GGCC 2 cut(s) 77, 221
BsuTUI ATCGAT 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 337
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 2 cut(s) 130, 310
Cac8I GCNNGC 2 cut(s) 544, 603
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 235
ClaI ATCGAT 1 cut(s) 289
Csp6I GTAC 1 cut(s) 475
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 3 cut(s) 310, 328, 515
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 1 cut(s) 55
EaeI YGGCCR 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco31I GGTCTC 2 cut(s) 11, 319
Eco47I GGWCC 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 13
Eco57I CTGAAG 1 cut(s) 572
Eco88I CYCGRG 1 cut(s) 14
EcoICRI GAGCTC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 15
FaeI CATG 3 cut(s) 313, 331, 518
FaiI YATR 5 cut(s) 189, 225, 311, 329, 516
FaqI GGGAC 1 cut(s) 186
FatI CATG 3 cut(s) 309, 327, 514
Fnu4HI GCNGC 4 cut(s) 101, 497, 599, 606
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 15
Fsp4HI GCNGC 4 cut(s) 101, 497, 599, 606
GluI GCNGC 4 cut(s) 101, 497, 599, 606
HaeIII GGCC 2 cut(s) 77, 221
HapII CCGG 1 cut(s) 238
Hin1II CATG 3 cut(s) 313, 331, 518
HindIII AAGCTT 1 cut(s) 554
HinfI GANTC 4 cut(s) 107, 375, 524, 581
HpaII CCGG 1 cut(s) 238
HphI GGTGA 2 cut(s) 292, 454
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 5 cut(s) 7, 58, 422, 534, 552
Hpy188III TCNNGA 4 cut(s) 16, 160, 233, 401
Hpy8I GTNNAC 1 cut(s) 243
HpyAV CCTTC 2 cut(s) 250, 407
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 1 cut(s) 441
HpyCH4V TGCA 4 cut(s) 320, 362, 499, 608
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 359
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 441
Hsp92II CATG 3 cut(s) 313, 331, 518
LpnPI CCDG 9 cut(s) 36, 50, 55, 82, 104, 173, 218, 251, 316
Lsp1109I GCAGC 3 cut(s) 483, 592, 610
LweI GCATC 1 cut(s) 21
MaeII ACGT 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 442, 517
MboII GAAGA 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 15
MlsI TGGCCA 1 cut(s) 77
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 2 cut(s) 101, 518
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 8 cut(s) 62, 146, 168, 214, 365, 516, 519, 540
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 77
MspI CCGG 1 cut(s) 238
MwoI GCNNNNNNNGC 2 cut(s) 109, 359
NlaIII CATG 3 cut(s) 313, 331, 518
NmuCI GTSAC 1 cut(s) 442
NspI RCATGY 1 cut(s) 518
NspV TTCGAA 1 cut(s) 432
PaeR7I CTCGAG 1 cut(s) 14
PciI ACATGT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 2 cut(s) 438, 447
PfeI GAWTC 2 cut(s) 375, 581
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 4 cut(s) 102, 498, 600, 607
PleI GAGTC 2 cut(s) 101, 518
PpsI GAGTC 2 cut(s) 101, 518
PscI ACATGT 1 cut(s) 514
Psp124BI GAGCTC 1 cut(s) 15
PspPI GGNCC 1 cut(s) 235
PstI CTGCAG 1 cut(s) 610
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SacI GAGCTC 1 cut(s) 15
SatI GCNGC 4 cut(s) 101, 497, 599, 606
Sau96I GGNCC 1 cut(s) 235
SchI GAGTC 2 cut(s) 101, 518
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 606
Sfr274I CTCGAG 1 cut(s) 14
SfuI TTCGAA 1 cut(s) 432
SinI GGWCC 1 cut(s) 235
SlaI CTCGAG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 14, 401
SmoI CTYRAG 2 cut(s) 14, 401
SsiI CCGC 2 cut(s) 100, 191
SstI GAGCTC 1 cut(s) 15
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 1 cut(s) 444
TaqI TCGA 4 cut(s) 15, 105, 289, 432
TauI GCSGC 1 cut(s) 103
TfiI GAWTC 2 cut(s) 375, 581
TscAI CASTG 2 cut(s) 137, 310
TseFI GTSAC 1 cut(s) 442
TseI GCWGC 3 cut(s) 496, 598, 605
Tsp45I GTSAC 1 cut(s) 442
TspDTI ATGAA 6 cut(s) 275, 316, 407, 548, 588, 594
TspRI CASTG 2 cut(s) 137, 310
VpaK11BI GGWCC 1 cut(s) 235
XceI RCATGY 1 cut(s) 518
XhoI CTCGAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.