Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Forward (+)

30569651 .. 30571187

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAGAGCTAGAGAATCCAATTGTGATGAACAAGATCATCACATTCCTCTCTTCTTTGGTTCAGAGAGTAGCTGAATCAAATGATCTCAATTCTCAGTTCCAAATCCAGAAAGTCTCAGTCTTTCATGGTCTAACTAGACCTACGATTTCAATTCAGAGCTACCTAGAGAGGATCTTCAAGTATGCAAATTGCAGCCCTTCTTGCTTAATCGTCGCTTATGTTTATCTCGATCGGTTTACTCAGAAGCAGCCCTCCTTGCCTATCAATTCGTTCAACGTTCATCGGTTGCTGATTACTAGTGTCATGGTGGCTGCAAAATTCATGGATGATATGTACTACAATAATGCTTATTATGCAAAAGTTGGAGGGATCAGCACAGCAGAGATGAATTTTCTTGAAGTGGATTTCCTATTTGGTTTGAGCTTCAACTTGAATGTGACTCCCACAACCTTCACCACCTACTGTTCCTACCTTCAAAGGGAAATGCTTCTGTTGCAACCTCCTCTAGATTCCATAGATTCTTCTCTCAGTTTGGGAAAATCACTAAAGCTCCATTTGTGCTTTGATGAAGATGACCCCTCACATAAGCAACGGCAACTTGCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

203

Amino Acids

23.15

Weight (kDa)

6.06

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	28 - 145	5.6e-41	Cyclin
Cyclin_N	PF00134	52 - 146	2e-12	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	2 cut(s)	182, 380
AcsI	RAATTY	2 cut(s)	320, 391
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	7 cut(s)	153, 181, 277, 401, 430, 436, 479
AhlI	ACTAGT	1 cut(s)	299
AluBI	AGCT	5 cut(s)	10, 74, 162, 426, 553
AluI	AGCT	5 cut(s)	10, 74, 162, 426, 553
Alw26I	GTCTC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	182, 380
ApeKI	GCWGC	3 cut(s)	195, 250, 314
ApoI	RAATTY	2 cut(s)	320, 391
Asp700I	GAANNNNTTC	1 cut(s)	489
AsuHPI	GGTGA	1 cut(s)	448
BbvI	GCAGC	3 cut(s)	207, 262, 301
BcoDI	GTCTC	1 cut(s)	121
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	5 cut(s)	11, 138, 167, 300, 509
BisI	GCNGC	3 cut(s)	196, 251, 315
BlsI	GCNGC	3 cut(s)	197, 252, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	4 cut(s)	110, 132, 257, 544
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	3 cut(s)	207, 262, 301
Bsh1285I	CGRYCG	1 cut(s)	235
BsiEI	CGRYCG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	36, 85, 174, 232, 372
BspCNI	CTCAG	4 cut(s)	109, 131, 256, 543
BspPI	GGATC	2 cut(s)	182, 380
BssMI	GATC	5 cut(s)	36, 85, 174, 232, 372
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	58
BstDEI	CTNAG	4 cut(s)	96, 118, 243, 530
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	5 cut(s)	39, 88, 177, 235, 375
BstMAI	GTCTC	1 cut(s)	121
BstMBI	GATC	5 cut(s)	36, 85, 174, 232, 372
BstMCI	CGRYCG	1 cut(s)	235
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 259, 356, 496
BstV1I	GCAGC	3 cut(s)	207, 262, 301
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	334
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	128, 307, 325
CviJI	RGCY	8 cut(s)	10, 74, 162, 198, 253, 314, 426, 553
CviKI_1	RGCY	8 cut(s)	10, 74, 162, 198, 253, 314, 426, 553
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	4 cut(s)	96, 118, 243, 530
DpnI	GATC	5 cut(s)	38, 87, 176, 234, 374
DpnII	GATC	5 cut(s)	36, 85, 174, 232, 372
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
FaeI	CATG	3 cut(s)	131, 310, 328
FaiI	YATR	9 cut(s)	129, 186, 222, 308, 326, 335, 357, 518, 588
FatI	CATG	3 cut(s)	127, 306, 324
Fnu4HI	GCNGC	3 cut(s)	196, 251, 315
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	196, 251, 315
FspBI	CTAG	5 cut(s)	11, 138, 167, 300, 509
GluI	GCNGC	3 cut(s)	196, 251, 315
Hin1II	CATG	3 cut(s)	131, 310, 328
HinfI	GANTC	5 cut(s)	16, 77, 442, 512, 521
HphI	GGTGA	1 cut(s)	448
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	66, 159, 246
Hpy188III	TCNNGA	4 cut(s)	109, 230, 398, 509
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	218
HpyAV	CCTTC	3 cut(s)	210, 463, 485
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	188, 195, 317, 359, 499
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 259, 356, 496
HpyF3I	CTNAG	4 cut(s)	96, 118, 243, 530
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	131, 310, 328
Kzo9I	GATC	5 cut(s)	36, 85, 174, 232, 372
LmnI	GCTCC	1 cut(s)	558
LpnPI	CCDG	1 cut(s)	122
Lsp1109I	GCAGC	3 cut(s)	207, 262, 301
MaeI	CTAG	5 cut(s)	11, 138, 167, 300, 509
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	5 cut(s)	38, 87, 176, 234, 374
MboI	GATC	5 cut(s)	36, 85, 174, 232, 372
MboII	GAAGA	4 cut(s)	45, 169, 516, 584
MfeI	CAATTG	1 cut(s)	21
MflI	RGATCY	1 cut(s)	174
MluCI	AATT	7 cut(s)	21, 91, 153, 190, 268, 320, 391
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	7 cut(s)	59, 165, 265, 362, 513, 516, 592
MroXI	GAANNNNTTC	1 cut(s)	489
MseI	TTAA	1 cut(s)	209
MunI	CAATTG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	204, 259, 356, 496
NdeII	GATC	5 cut(s)	36, 85, 174, 232, 372
NlaIII	CATG	3 cut(s)	131, 310, 328
NmuCI	GTSAC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	489
PfeI	GAWTC	4 cut(s)	16, 77, 512, 521
PkrI	GCNGC	3 cut(s)	197, 252, 316
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp1406I	AACGTT	1 cut(s)	279
PsuI	RGATCY	1 cut(s)	174
PvuI	CGATCG	1 cut(s)	235
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	209
SatI	GCNGC	3 cut(s)	196, 251, 315
Sau3AI	GATC	5 cut(s)	36, 85, 174, 232, 372
SchI	GAGTC	1 cut(s)	436
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	7 cut(s)	21, 91, 153, 190, 268, 320, 391
SspMI	CTAG	5 cut(s)	11, 138, 167, 300, 509
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	231
TasI	AATT	7 cut(s)	21, 91, 153, 190, 268, 320, 391
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	4 cut(s)	16, 77, 512, 521
Tru1I	TTAA	1 cut(s)	209
Tru9I	TTAA	1 cut(s)	209
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	195, 250, 314
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	6 cut(s)	44, 116, 272, 313, 404, 585
XapI	RAATTY	2 cut(s)	320, 391
XbaI	TCTAGA	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	489
XspI	CTAG	5 cut(s)	11, 138, 167, 300, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.