Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Forward (+)

11384716 .. 11385757

Gene Structure 1042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G140600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCAGAGCTAGAGAACCCAATAGTGATGACAAAGGTCATCACATTCCTCTCTTCCTTGGTTCAAAGGGTGGCTGAATCAAATGACATCAATTGTGAATTCCAACCCCAGAAAATCTCAGTCTTCCATGGCCAAACCAGGCCCCCCATAGCAATACAGGGCTATTTAGAGAGAATTTTCAAGTACGCCGATTGTAGCCCATCTTGCTTAATTGTTGCATATGTTTATCTGGATCGGTTTTCTCAGAGGCAACCCGATTTGCCTATCAATTCGTACAACGTTCACCGGTTGCTGATTACTAGTGTTATGGTGGCTGCAAAGTTCATGGATGACATGTACTACAACAATGCCTATTATGCAAAAGTTGGAGGCATCAGCACAATAGAGATGAATTTTCTTGAGGTGGATTTCCTTTTTGGTTTGAACTTCAACTTAAATGTGACCCCCTCGACCTTCACCACCTACTGTTCCTACCTCCAGAGAGAGATGCTCTTAGTGCAGCCTCCTCTAGATTCTGCAGATTCTTCTCTTAGTTTAATCAAATCACTAAAGCTCCAGTTGTGCTTTGATGAGGGTGAAACCTCCCATCAGCAACAGCAGCTAGCTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

204

Amino Acids

23.14

Weight (kDa)

4.99

Isoelectric Point (pI)

35.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	279
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	3 cut(s)	98, 174, 391
AfaI	GTAC	3 cut(s)	185, 275, 338
AflIII	ACRYGT	1 cut(s)	333
AgeI	ACCGGT	1 cut(s)	285
AgsI	TTSAA	4 cut(s)	65, 181, 424, 430
AhlI	ACTAGT	1 cut(s)	299
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	4 cut(s)	10, 553, 601, 605
AluI	AGCT	4 cut(s)	10, 553, 601, 605
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	2 cut(s)	130, 140
ApeKI	GCWGC	3 cut(s)	314, 499, 598
ApoI	RAATTY	3 cut(s)	98, 174, 391
AsiGI	ACCGGT	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	141
AsuHPI	GGTGA	3 cut(s)	275, 448, 587
AsuNHI	GCTAGC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	301, 511
BccI	CCATC	2 cut(s)	208, 594
BciT130I	CCWGG	1 cut(s)	139
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	4 cut(s)	11, 300, 509, 602
BfmI	CTRYAG	1 cut(s)	516
BisI	GCNGC	3 cut(s)	315, 500, 599
BlsI	GCNGC	3 cut(s)	316, 501, 600
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	2 cut(s)	381, 477
BmtI	GCTAGC	1 cut(s)	605
BoxI	GACNNNNGTC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	474, 506
BpmI	CTGGAG	2 cut(s)	461, 539
BpuEI	CTTGAG	1 cut(s)	419
BsaJI	CCNNGG	2 cut(s)	57, 127
BsaWI	WCCGGW	1 cut(s)	285
BsaXI	ACNNNNNCTCC	2 cut(s)	537, 567
Bse118I	RCCGGY	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	57, 127
BseGI	GGATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	132, 257
BseNI	ACTGG	1 cut(s)	556
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	2 cut(s)	301, 511
BsgI	GTGCAG	1 cut(s)	518
BshFI	GGCC	2 cut(s)	132, 142
BshTI	ACCGGT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	286
BsnI	GGCC	2 cut(s)	132, 142
Bsp143I	GATC	1 cut(s)	232
Bsp19I	CCATGG	1 cut(s)	127
BspANI	GGCC	2 cut(s)	132, 142
BspCNI	CTCAG	2 cut(s)	131, 256
BspLI	GGNNCC	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	520
BspOI	GCTAGC	1 cut(s)	605
BspPI	GGATC	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	285
BssECI	CCNNGG	2 cut(s)	57, 127
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	2 cut(s)	57, 127
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	467
Bst6I	CTCTTC	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	4 cut(s)	118, 243, 493, 530
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 598
BstNI	CCWGG	1 cut(s)	139
BstNSI	RCATGY	1 cut(s)	337
BstPAI	GACNNNNGTC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	516
BstV1I	GCAGC	2 cut(s)	301, 511
BstV2I	GAAGAC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	132, 142
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	603
Cfr10I	RCCGGY	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	141
Csp6I	GTAC	3 cut(s)	184, 274, 337
CspAI	ACCGGT	1 cut(s)	285
CviAII	CATG	3 cut(s)	128, 325, 334
CviQI	GTAC	3 cut(s)	184, 274, 337
DdeI	CTNAG	4 cut(s)	118, 243, 493, 530
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	58
EarI	CTCTTC	1 cut(s)	58
Eco130I	CCWWGG	2 cut(s)	57, 127
EcoO109I	RGGNCCY	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	57, 127
ErhI	CCWWGG	2 cut(s)	57, 127
FaeI	CATG	3 cut(s)	131, 328, 337
FaiI	YATR	8 cut(s)	129, 149, 220, 222, 308, 326, 335, 357
FatI	CATG	3 cut(s)	127, 324, 333
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	315, 500, 599
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	3 cut(s)	315, 500, 599
FspBI	CTAG	4 cut(s)	11, 300, 509, 602
GluI	GCNGC	3 cut(s)	315, 500, 599
GsuI	CTGGAG	2 cut(s)	461, 539
HaeIII	GGCC	2 cut(s)	132, 142
HapII	CCGG	1 cut(s)	286
Hin1II	CATG	3 cut(s)	131, 328, 337
HinfI	GANTC	3 cut(s)	77, 512, 521
HpaII	CCGG	1 cut(s)	286
HphI	GGTGA	3 cut(s)	275, 448, 587
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	4 cut(s)	230, 398, 478, 509
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	463
HpyCH4III	ACNGT	1 cut(s)	467
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	5 cut(s)	218, 317, 359, 499, 518
HpyF10VI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 598
HpyF3I	CTNAG	4 cut(s)	118, 243, 493, 530
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	131, 328, 337
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	1 cut(s)	558
LpnPI	CCDG	8 cut(s)	122, 124, 143, 151, 215, 299, 491, 569
Lsp1109I	GCAGC	2 cut(s)	301, 511
LweI	GCATC	2 cut(s)	381, 477
MaeI	CTAG	4 cut(s)	11, 300, 509, 602
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	45, 115, 516
MfeI	CAATTG	1 cut(s)	91
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	6 cut(s)	91, 98, 174, 210, 268, 391
MluNI	TGGCCA	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	127, 346
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	4 cut(s)	209, 434, 536, 610
Msp20I	TGGCCA	1 cut(s)	132
MspI	CCGG	1 cut(s)	286
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	204, 356, 496, 598
NcoI	CCATGG	1 cut(s)	127
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	232
NheI	GCTAGC	1 cut(s)	601
NlaIII	CATG	3 cut(s)	131, 328, 337
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	337
PciI	ACATGT	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	77, 512, 521
PinAI	ACCGGT	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	316, 501, 600
PscI	ACATGT	1 cut(s)	333
PshAI	GACNNNNGTC	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	520
RsaI	GTAC	3 cut(s)	185, 275, 338
RsaNI	GTAC	3 cut(s)	184, 274, 337
SaqAI	TTAA	4 cut(s)	209, 434, 536, 610
SatI	GCNGC	3 cut(s)	315, 500, 599
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	381, 477
SfcI	CTRYAG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	6 cut(s)	91, 98, 174, 210, 268, 391
SspMI	CTAG	4 cut(s)	11, 300, 509, 602
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	57, 127
TaaI	ACNGT	1 cut(s)	467
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	449
TasI	AATT	6 cut(s)	91, 98, 174, 210, 268, 391
TatI	WGTACW	1 cut(s)	336
TfiI	GAWTC	3 cut(s)	77, 512, 521
Tru1I	TTAA	4 cut(s)	209, 434, 536, 610
Tru9I	TTAA	4 cut(s)	209, 434, 536, 610
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	314, 499, 598
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	2 cut(s)	313, 404
XapI	RAATTY	3 cut(s)	98, 174, 391
XbaI	TCTAGA	1 cut(s)	508
XceI	RCATGY	1 cut(s)	337
XspI	CTAG	4 cut(s)	11, 300, 509, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.