Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Forward (+)

49128129 .. 49131411

Gene Structure 3283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0377600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAATTCTGCAGATCCTAGATTACTACATGGTGACGTCTCCTTTTTTGTGCATATATATGATGCAAGTTATCATGATTTTGTTGGCATCATTATCCTACTTATTATTAATTCTACCATCAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCTGCTGCTCTTATGGTTCAGTCGGCCCCAAAAGCGAAGGTTTTACGTGACAGAAAATGGACAGAAAAAGATGCGGCAAGATTGGTTCCTGGAGACATAATTAGCATCAAACTTGGTGATATCGTTCTATCTGGTGCACGCCTTCTTGAAGGTGATCCTTTAAAGATTGATCAGTCTGCTCTTACCGGAGAATCGCTTCCTGTGACCAAAAATCCTGGTGATGTGGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0006979 GO:0008113 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0016491 GO:0016667 GO:0016671 GO:0019538 GO:0031967 GO:0031975 GO:0033554 GO:0033744 GO:0034599 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070887 GO:0071704 GO:0080167 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMSR

Protein Analysis

128

Amino Acids

13.83

Weight (kDa)

5.22

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	59 - 128	1.1e-18	P-type ATPase actuator domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	8, 302
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	2 cut(s)	241, 367
Alw21I	GWGCWC	1 cut(s)	292
Alw26I	GTCTC	2 cut(s)	43, 240
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	8, 302
AoxI	GGCC	1 cut(s)	177
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	152, 155, 158
ApoI	RAATTY	1 cut(s)	4
AseI	ATTAAT	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	178
AsuHPI	GGTGA	4 cut(s)	44, 281, 317, 383
BaeGI	GKGCMC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	3 cut(s)	139, 142, 145
BccI	CCATC	1 cut(s)	125
BciT130I	CCWGG	2 cut(s)	243, 369
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	43, 240
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	9
BisI	GCNGC	4 cut(s)	153, 156, 159, 228
BlsI	GCNGC	4 cut(s)	154, 157, 160, 229
Bme1390I	CCNGG	2 cut(s)	243, 369
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	180, 240
BmrFI	CCNGG	2 cut(s)	243, 369
BmsI	GCATC	4 cut(s)	52, 96, 214, 267
BpmI	CTGGAG	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	2 cut(s)	243, 369
BseMI	GCAATG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	3 cut(s)	139, 142, 145
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	292
BsiSI	CCGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	43, 240
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	13, 307, 322
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	180, 240
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	8, 302
BsrDI	GCAATG	1 cut(s)	154
BssMI	GATC	3 cut(s)	13, 307, 322
BssNI	GRCGYC	1 cut(s)	36
Bst2UI	CCWGG	2 cut(s)	243, 369
BstACI	GRCGYC	1 cut(s)	36
BstAPI	GCANNNNNTGC	1 cut(s)	149
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	145, 292
BstKTI	GATC	3 cut(s)	16, 310, 325
BstMAI	GTCTC	2 cut(s)	43, 240
BstMBI	GATC	3 cut(s)	13, 307, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 158, 185
BstNI	CCWGG	2 cut(s)	243, 369
BstSCI	CCNGG	2 cut(s)	241, 367
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	3 cut(s)	139, 142, 145
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuRI	GGCC	1 cut(s)	179
Cac8I	GCNNGC	2 cut(s)	145, 292
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	178
CviAII	CATG	2 cut(s)	29, 74
CviJI	RGCY	1 cut(s)	179
CviKI_1	RGCY	1 cut(s)	179
DpnI	GATC	3 cut(s)	15, 309, 324
DpnII	GATC	3 cut(s)	13, 307, 322
DraI	TTTAAA	1 cut(s)	315
Eco32I	GATATC	1 cut(s)	274
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	2 cut(s)	241, 367
EcoRV	GATATC	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	2 cut(s)	32, 77
FaiI	YATR	9 cut(s)	30, 54, 56, 58, 60, 75, 128, 167, 251
FatI	CATG	2 cut(s)	28, 73
FbaI	TGATCA	1 cut(s)	322
Fnu4HI	GCNGC	4 cut(s)	153, 156, 159, 228
Fsp4HI	GCNGC	4 cut(s)	153, 156, 159, 228
FspBI	CTAG	1 cut(s)	18
GluI	GCNGC	4 cut(s)	153, 156, 159, 228
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	32, 77
HinfI	GANTC	1 cut(s)	344
HpaII	CCGG	1 cut(s)	339
HphI	GGTGA	4 cut(s)	44, 281, 317, 383
Hpy166II	GTNNAC	2 cut(s)	290, 382
Hpy188III	TCNNGA	2 cut(s)	74, 299
Hpy8I	GTNNAC	2 cut(s)	290, 382
HpyAV	CCTTC	3 cut(s)	184, 296, 305
HpyCH4IV	ACGT	2 cut(s)	36, 199
HpyCH4V	TGCA	5 cut(s)	11, 52, 65, 143, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 158, 185
HpySE526I	ACGT	2 cut(s)	36, 199
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	32, 77
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	13, 307, 322
LpnPI	CCDG	8 cut(s)	129, 228, 255, 270, 352, 354, 366, 381
Lsp1109I	GCAGC	3 cut(s)	139, 142, 145
LweI	GCATC	4 cut(s)	52, 96, 214, 267
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	2 cut(s)	36, 199
MaeIII	GTNAC	3 cut(s)	32, 200, 355
MalI	GATC	3 cut(s)	15, 309, 324
MboI	GATC	3 cut(s)	13, 307, 322
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	3 cut(s)	4, 109, 252
MnlI	CCTC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	108, 314
MslI	CAYNNNNRTG	1 cut(s)	57
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	243, 369
MvaI	CCWGG	2 cut(s)	243, 369
MwoI	GCNNNNNNNGC	3 cut(s)	149, 158, 185
NdeII	GATC	3 cut(s)	13, 307, 322
NlaIII	CATG	2 cut(s)	32, 77
NlaIV	GGNNCC	2 cut(s)	180, 240
NmuCI	GTSAC	3 cut(s)	32, 200, 355
PagI	TCATGA	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	241
PkrI	GCNGC	4 cut(s)	154, 157, 160, 229
Ppu21I	YACGTR	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	241, 367
PspGI	CCWGG	2 cut(s)	241, 367
PspN4I	GGNNCC	2 cut(s)	180, 240
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	108, 314
SatI	GCNGC	4 cut(s)	153, 156, 159, 228
Sau3AI	GATC	3 cut(s)	13, 307, 322
Sau96I	GGNCC	1 cut(s)	178
ScrFI	CCNGG	2 cut(s)	243, 369
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	4 cut(s)	39, 195, 202, 307
SfaNI	GCATC	4 cut(s)	52, 96, 214, 267
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	3 cut(s)	4, 109, 252
SsiI	CCGC	1 cut(s)	227
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	2 cut(s)	241, 367
TaiI	ACGT	2 cut(s)	39, 202
TasI	AATT	3 cut(s)	4, 109, 252
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	2 cut(s)	108, 314
Tru9I	TTAA	2 cut(s)	108, 314
TseFI	GTSAC	3 cut(s)	32, 200, 355
TseI	GCWGC	3 cut(s)	152, 155, 158
Tsp45I	GTSAC	3 cut(s)	32, 200, 355
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	288
VspI	ATTAAT	1 cut(s)	108
XapI	RAATTY	1 cut(s)	4
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	18
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.