Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004193

Physical Location & Seq

Genomic Coordinates Forward (+)

5872822 .. 5874484

Gene Structure 1663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00284220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCTGAGATCGAGAGCCCAGAAGCGATGCCGAGAGTGATAGCTTTCCTCTCCGACGTCCTCGACCGGGTGGCCAAGTCCAACGACCTGAACCGGCGGCTCGACTCTCAGAAGCTCTCGGTGTTTCACTGCCTCACAAAACCCACAATCTCAATCCACAGCTATTTGGAGAGGATTTTCAAGTACGCGGATTGTAGCCCCTCTTGTTTTGTGGTGGCCTATGTTTATCTGGATCGGTTCACACAAAGACAGAAGGCTTTGCCTATCAACTCGTTCAATGTTCACCGATTGCTCATCACTAGTGTCTTGGTCTCTGCAAAGTTCATGGATGACGTTTCTTACAACAATGCCTACTTTGCAAGAGTGGGAGGAATCAGCACGAAAGAGATGAACCTTCTCGAGATGGATTTCCTGTTCGGATTAGGGTTCGAATTAAACGTGACAACCGAAAACTTTTTCGCCTATTGTTCGTACCTGCAAAGAGAAATGTTGCTGCAATCTCCTCCTCTACATGTAGCAGAATCTCCTCCAAATTTGGCGAGCCGTCTGAAGCTTCATTGTTCCTTCAATGAAGATGAATCGACCCATCAAAAGCAGCTTGCTGCAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

203

Amino Acids

23.19

Weight (kDa)

6.3

Isoelectric Point (pI)

47.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	34 - 145	1.1e-40	Cyclin
Cyclin_N	PF00134	54 - 146	2.8e-11	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44740
fragaria_vesca	FvH4_7g09340 FvH4_7g26790
malus_domestica	MD02G1219700.v1.1 MD07G1097400.v1.1
prunus_persica	Prupe.2G121600_v2.0.a1 Prupe.2G271100_v2.0.a1 Prupe.6G140600_v2.0.a1
pyrus_communis	pycom01g18680 pycom02g18080 pycom07g08020 pycom07g22110
rosa_chinensis	RchiOBHm_Chr1g0345981 RchiOBHm_Chr1g0373481
rosa_laevigata	RLG00000026823 RLG00000028827
rosa_multiflora	Rmu_co8438935.1_g000001 Rmu_sc0008115.1_g000007 Rmu_sc0019006.1_g000005
rosa_roxburghii	Rroxscaffold_4G00284220 Rroxscaffold_4G00308970
rosa_rugosa	Rorug01G0377600
rosa_samantha	Rh1AG196400 Rh1AG386800 Rh1BG161900 Rh1BG351100 Rh1CG181300 Rh1CG363900 Rh1DG192200 Rh1DG381600
rosa_wichuraiana	Rw1G016410 Rw1G016510 Rw1G034850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	483
AccII	CGCG	1 cut(s)	188
AciI	CCGC	2 cut(s)	97, 188
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	532
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	2 cut(s)	185, 473
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	181, 277, 568
AhlI	ACTAGT	1 cut(s)	299
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	5 cut(s)	44, 115, 162, 553, 598
AluI	AGCT	5 cut(s)	44, 115, 162, 553, 598
Alw26I	GTCTC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	2 cut(s)	72, 216
ApeKI	GCWGC	3 cut(s)	493, 595, 602
ApoI	RAATTY	1 cut(s)	532
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	1 cut(s)	429
AvaI	CYCGRG	1 cut(s)	398
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	20
BbvI	GCAGC	3 cut(s)	480, 589, 607
BccI	CCATC	2 cut(s)	397, 594
BceAI	ACGGC	1 cut(s)	528
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	316
BcuI	ACTAGT	1 cut(s)	299
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	603
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	4 cut(s)	98, 494, 596, 603
BlsI	GCNGC	4 cut(s)	99, 495, 597, 604
Bme1390I	CCNGG	1 cut(s)	68
BmeT110I	CYCGRG	1 cut(s)	398
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	429
BpuMI	CCSGG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse118I	RCCGGY	1 cut(s)	93
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	3 cut(s)	492, 495, 516
BseXI	GCAGC	3 cut(s)	480, 589, 607
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	74, 218
BsiEI	CGRYCG	1 cut(s)	67
BsiHKCI	CYCGRG	1 cut(s)	398
BsiSI	CCGG	2 cut(s)	67, 94
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	316
BsnI	GGCC	2 cut(s)	74, 218
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	9, 232
BspACI	CCGC	2 cut(s)	97, 188
BspANI	GGCC	2 cut(s)	74, 218
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	188
BspMAI	CTGCAG	1 cut(s)	607
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	240
BspT104I	TTCGAA	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	316
BsrFI	RCCGGY	1 cut(s)	93
BssAI	RCCGGY	1 cut(s)	93
BssMI	GATC	2 cut(s)	9, 232
BssNI	GRCGYC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	57
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	2 cut(s)	541, 600
BstDEI	CTNAG	2 cut(s)	6, 108
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	188
BstKTI	GATC	2 cut(s)	12, 235
BstMAI	GTCTC	1 cut(s)	316
BstMBI	GATC	2 cut(s)	9, 232
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	188
BstV1I	GCAGC	3 cut(s)	480, 589, 607
BsuRI	GGCC	2 cut(s)	74, 218
BtgZI	GCGATG	1 cut(s)	41
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	541, 600
Cfr10I	RCCGGY	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	184, 472
CviAII	CATG	2 cut(s)	325, 512
CviQI	GTAC	2 cut(s)	184, 472
DdeI	CTNAG	2 cut(s)	6, 108
DpnI	GATC	2 cut(s)	11, 234
DpnII	GATC	2 cut(s)	9, 232
EaeI	YGGCCR	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	569
Eco88I	CYCGRG	1 cut(s)	398
EcoT38I	GRGCYC	1 cut(s)	20
FaeI	CATG	2 cut(s)	328, 515
FaiI	YATR	3 cut(s)	222, 326, 513
FatI	CATG	2 cut(s)	324, 511
Fnu4HI	GCNGC	4 cut(s)	98, 494, 596, 603
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	4 cut(s)	98, 494, 596, 603
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	4 cut(s)	98, 494, 596, 603
HaeIII	GGCC	2 cut(s)	74, 218
HapII	CCGG	2 cut(s)	67, 94
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	2 cut(s)	328, 515
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	4 cut(s)	104, 372, 521, 578
HpaII	CCGG	2 cut(s)	67, 94
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	240, 283
Hpy188I	TCNGA	5 cut(s)	7, 55, 111, 419, 549
Hpy188III	TCNNGA	4 cut(s)	13, 230, 398, 400
Hpy8I	GTNNAC	2 cut(s)	240, 283
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	3 cut(s)	247, 404, 574
HpyCH4IV	ACGT	3 cut(s)	57, 333, 438
HpyCH4V	TGCA	5 cut(s)	317, 359, 478, 496, 605
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	2 cut(s)	6, 108
HpySE526I	ACGT	3 cut(s)	57, 333, 438
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	328, 515
Kzo9I	GATC	2 cut(s)	9, 232
LpnPI	CCDG	7 cut(s)	33, 80, 101, 107, 215, 425, 488
Lsp1109I	GCAGC	3 cut(s)	480, 589, 607
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	3 cut(s)	57, 333, 438
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	2 cut(s)	11, 234
MboI	GATC	2 cut(s)	9, 232
MboII	GAAGA	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	431, 532
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	2 cut(s)	78, 105
MnlI	CCTC	9 cut(s)	59, 71, 143, 165, 211, 362, 513, 516, 537
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	74
MspI	CCGG	2 cut(s)	67, 94
MspR9I	CCNGG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	2 cut(s)	9, 232
NlaIII	CATG	2 cut(s)	328, 515
NmeAIII	GCCGAG	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	439
NspI	RCATGY	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	429
PaeR7I	CTCGAG	1 cut(s)	398
PciI	ACATGT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	2 cut(s)	435, 444
PfeI	GAWTC	3 cut(s)	372, 521, 578
PkrI	GCNGC	4 cut(s)	99, 495, 597, 604
PleI	GAGTC	1 cut(s)	98
PpsI	GAGTC	1 cut(s)	98
PscI	ACATGT	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	607
RsaI	GTAC	2 cut(s)	185, 473
RsaNI	GTAC	2 cut(s)	184, 472
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	4 cut(s)	98, 494, 596, 603
Sau3AI	GATC	2 cut(s)	9, 232
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	20
SfaNI	GCATC	1 cut(s)	18
SfcI	CTRYAG	1 cut(s)	603
Sfr274I	CTCGAG	1 cut(s)	398
SfuI	TTCGAA	1 cut(s)	429
SlaI	CTCGAG	1 cut(s)	398
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
SpeI	ACTAGT	1 cut(s)	299
Sse9I	AATT	2 cut(s)	431, 532
SsiI	CCGC	2 cut(s)	97, 188
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	66
TaiI	ACGT	3 cut(s)	60, 336, 441
TaqI	TCGA	6 cut(s)	12, 63, 102, 399, 429, 581
TasI	AATT	2 cut(s)	431, 532
TauI	GCSGC	1 cut(s)	100
TfiI	GAWTC	3 cut(s)	372, 521, 578
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	3 cut(s)	493, 595, 602
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	5 cut(s)	313, 404, 545, 585, 591
TspRI	CASTG	1 cut(s)	134
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	398
XspI	CTAG	1 cut(s)	300
ZraI	GACGTC	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.