AT2G44940

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012492
Physical Location & Seq
Forward (+)
18537177 .. 18538479
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44940.1

Sequence Viewer

Length: 888 bp
ATGGCAAGACAAATCAACATAGAGAGTAGTGTTTCTCAAGTTACCTTTATCTCCTCCGCCATCCCCGCCGTATCTTCCTCCTCCTCCATCACCGCTTCCGCCTCATTGTCCTCTTCACCTACTACATCTTCCTCTTCTTCGTCATCAACAAATTCTAACTTCATTGAGGAAGACAACTCTAAAAGAAAAGCATCTCGAAGATCATTGTCATCGTTAGTCTCCGTTGAAGACGATGATGATCAAAACGGTGGAGGTGGGAAACGGCGAAAGACCAACGGTGGAGATAAACATCCGACGTATAGAGGAGTGAGGATGAGGAGTTGGGGAAAATGGGTGTCGGAGATTAGAGAGCCGAGAAAGAAATCAAGAATCTGGCTCGGGACTTATCCAACGGCTGAGATGGCAGCTCGAGCTCATGACGTAGCGGCTTTAGCCATTAAAGGTACAACGGCTTACCTCAATTTTCCCAAGTTAGCCGGCGAGCTTCCTCGTCCAGTCACAAATTCTCCTAAAGACATTCAAGCCGCCGCCTCTTTAGCGGCCGTTAACTGGCAAGATTCGGTCAACGATGTGAGTAATTCTGAAGTGGCTGAAATAGTTGAAGCCGAGCCGAGTCGAGCCGTGGTGGCTCAGTTGTTTTCTTCGGACACAAGCACGACGACGACGACTCAGAGTCAAGAGTATTCGGAAGCTTCGTGTGCTTCGACTTCGGCGTGTACGGACAAAGACAGTGAGGAAGAGAAGCTGTTTGATTTGCCGGATTTGTTTACCGATGAGAATGAGATGATGATACGAAACGATGCGTTTTGCTACTACTCGTCCACGTGGCAGCTTTGTGGAGCCGATGCTGGGTTTCGGCTTGAAGAGCCGTTTTTTCTATCTGAATGA

Protein Analysis

295

Amino Acids

31.98

Weight (kDa)

4.92

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 99 - 148 9.4e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44940
fragaria_vesca FvH4_7g09550
malus_domestica MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica Prupe.2G123200_v2.0.a1
pyrus_communis pycom07g08150 pycom1310g00030
rosa_chinensis RchiOBHm_Chr1g0346421
rosa_laevigata RLG00000007751 RLG00000028801
rosa_multiflora Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii Rroxscaffold_4G00308600
rosa_rugosa Rorug01G0179600
rosa_samantha Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana Rw1G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 57, 66, 93, 99, 425, 525, 528, 539
AcoI YGGCCR 1 cut(s) 540
AcsI RAATTY 2 cut(s) 151, 502
AcuI CTGAAG 1 cut(s) 603
AcvI CACGTG 1 cut(s) 825
AfaI GTAC 2 cut(s) 445, 718
AfiI CCNNNNNNNGG 2 cut(s) 549, 849
AgsI TTSAA 4 cut(s) 227, 521, 602, 863
AhdI GACNNNNNGTC 1 cut(s) 672
AluBI AGCT 6 cut(s) 407, 413, 484, 692, 745, 832
AluI AGCT 6 cut(s) 407, 413, 484, 692, 745, 832
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 223
Ama87I CYCGRG 2 cut(s) 377, 408
AoxI GGCC 1 cut(s) 540
ApeKI GCWGC 2 cut(s) 404, 829
ApoI RAATTY 2 cut(s) 151, 502
AsuHPI GGTGA 2 cut(s) 82, 108
AvaI CYCGRG 2 cut(s) 377, 408
BanII GRGCYC 1 cut(s) 415
BbrPI CACGTG 1 cut(s) 825
BbsI GAAGAC 2 cut(s) 177, 234
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 2 cut(s) 416, 841
BccI CCATC 3 cut(s) 68, 95, 394
BceAI ACGGC 7 cut(s) 53, 278, 408, 465, 527, 605, 853
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 223
BglI GCCNNNNNGGC 1 cut(s) 626
BisI GCNGC 6 cut(s) 405, 426, 525, 528, 540, 830
BlsI GCNGC 6 cut(s) 406, 427, 526, 529, 541, 831
BmeRI GACNNNNNGTC 1 cut(s) 672
BmeT110I CYCGRG 2 cut(s) 377, 408
BmiI GGNNCC 1 cut(s) 841
BmsI GCATC 3 cut(s) 200, 790, 835
BpiI GAAGAC 2 cut(s) 177, 234
BpuEI CTTGAG 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 825
BsaBI GATNNNNATC 2 cut(s) 237, 288
BsaJI CCNNGG 1 cut(s) 621
BsaXI ACNNNNNCTCC 2 cut(s) 490, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 549, 849
Bse118I RCCGGY 1 cut(s) 476
Bse1I ACTGG 2 cut(s) 494, 554
Bse8I GATNNNNATC 2 cut(s) 237, 288
BseDI CCNNGG 1 cut(s) 621
BseGI GGATG 3 cut(s) 60, 289, 318
BseJI GATNNNNATC 2 cut(s) 237, 288
BseLI CCNNNNNNNGG 2 cut(s) 549, 849
BseMII CTCAG 3 cut(s) 387, 644, 683
BseNI ACTGG 2 cut(s) 494, 554
BseRI GAGGAG 5 cut(s) 43, 70, 73, 318, 331
BseX3I CGGCCG 1 cut(s) 540
BseXI GCAGC 2 cut(s) 416, 841
BseYI CCCAGC 1 cut(s) 848
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 1 cut(s) 542
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 415
BsiHKCI CYCGRG 2 cut(s) 377, 408
BsiSI CCGG 2 cut(s) 477, 758
BslFI GGGAC 1 cut(s) 394
BslI CCNNNNNNNGG 2 cut(s) 549, 849
BsmAI GTCTC 1 cut(s) 223
BsmFI GGGAC 1 cut(s) 394
BsnI GGCC 1 cut(s) 542
BsoBI CYCGRG 2 cut(s) 377, 408
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 2 cut(s) 200, 238
BspACI CCGC 8 cut(s) 57, 66, 93, 99, 425, 525, 528, 539
BspANI GGCC 1 cut(s) 542
BspCNI CTCAG 3 cut(s) 388, 643, 682
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 841
BspQI GCTCTTC 1 cut(s) 858
BsrFI RCCGGY 1 cut(s) 476
BsrI ACTGG 2 cut(s) 494, 554
BssAI RCCGGY 1 cut(s) 476
BssECI CCNNGG 1 cut(s) 621
BssMI GATC 2 cut(s) 200, 238
Bst4CI ACNGT 3 cut(s) 248, 278, 731
Bst6I CTCTTC 4 cut(s) 118, 139, 732, 858
BstBAI YACGTR 1 cut(s) 825
BstC8I GCNNGC 2 cut(s) 478, 482
BstDEI CTNAG 3 cut(s) 396, 630, 669
BstDSI CCRYGG 1 cut(s) 621
BstF5I GGATG 3 cut(s) 60, 289, 318
BstKTI GATC 2 cut(s) 203, 241
BstMAI GTCTC 1 cut(s) 223
BstMBI GATC 2 cut(s) 200, 238
BstMCI CGRYCG 1 cut(s) 543
BstMWI GCNNNNNNNGC 8 cut(s) 65, 401, 410, 431, 536, 626, 698, 865
BstV1I GCAGC 2 cut(s) 416, 841
BstV2I GAAGAC 2 cut(s) 177, 234
BstZI CGGCCG 1 cut(s) 540
BsuRI GGCC 1 cut(s) 542
BtgI CCRYGG 1 cut(s) 621
BtsCI GGATG 3 cut(s) 60, 289, 318
BtsIMutI CAGTG 1 cut(s) 736
Cac8I GCNNGC 2 cut(s) 478, 482
CciI TCATGA 1 cut(s) 415
Cfr10I RCCGGY 1 cut(s) 476
Csp6I GTAC 2 cut(s) 444, 717
CviAII CATG 1 cut(s) 416
CviQI GTAC 2 cut(s) 444, 717
DdeI CTNAG 3 cut(s) 396, 630, 669
DpnI GATC 2 cut(s) 202, 240
DpnII GATC 2 cut(s) 200, 238
DriI GACNNNNNGTC 1 cut(s) 672
EaeI YGGCCR 1 cut(s) 540
EagI CGGCCG 1 cut(s) 540
Eam1104I CTCTTC 4 cut(s) 118, 139, 732, 858
Eam1105I GACNNNNNGTC 1 cut(s) 672
EarI CTCTTC 4 cut(s) 118, 139, 732, 858
EciI GGCGGA 2 cut(s) 46, 88
Ecl136II GAGCTC 1 cut(s) 413
EclXI CGGCCG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 415
Eco52I CGGCCG 1 cut(s) 540
Eco53kI GAGCTC 1 cut(s) 413
Eco57I CTGAAG 1 cut(s) 603
Eco72I CACGTG 1 cut(s) 825
Eco88I CYCGRG 2 cut(s) 377, 408
EcoICRI GAGCTC 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 415
FaeI CATG 1 cut(s) 419
FaiI YATR 3 cut(s) 20, 300, 417
FaqI GGGAC 1 cut(s) 394
FatI CATG 1 cut(s) 415
FauI CCCGC 1 cut(s) 73
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 6 cut(s) 405, 426, 525, 528, 540, 830
FokI GGATG 3 cut(s) 47, 276, 325
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 6 cut(s) 405, 426, 525, 528, 540, 830
GluI GCNGC 6 cut(s) 405, 426, 525, 528, 540, 830
GsaI CCCAGC 1 cut(s) 852
HaeIII GGCC 1 cut(s) 542
HapII CCGG 2 cut(s) 477, 758
Hin1II CATG 1 cut(s) 419
HincII GTYRAC 2 cut(s) 547, 565
HindII GTYRAC 2 cut(s) 547, 565
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 5 cut(s) 369, 557, 613, 667, 673
HpaI GTTAAC 1 cut(s) 547
HpaII CCGG 2 cut(s) 477, 758
HphI GGTGA 2 cut(s) 82, 108
Hpy166II GTNNAC 5 cut(s) 547, 565, 717, 768, 822
Hpy188I TCNGA 7 cut(s) 294, 340, 583, 646, 672, 688, 883
Hpy188III TCNNGA 5 cut(s) 195, 366, 379, 416, 677
Hpy8I GTNNAC 5 cut(s) 547, 565, 717, 768, 822
Hpy99I CGWCG 4 cut(s) 298, 661, 664, 667
HpyCH4III ACNGT 3 cut(s) 248, 278, 731
HpyCH4IV ACGT 3 cut(s) 296, 420, 824
HpyF10VI GCNNNNNNNGC 8 cut(s) 65, 401, 410, 431, 536, 626, 698, 865
HpyF3I CTNAG 3 cut(s) 396, 630, 669
HpySE526I ACGT 3 cut(s) 296, 420, 824
Hsp92II CATG 1 cut(s) 419
KroI GCCGGC 1 cut(s) 476
KroNI GCCGGC 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 2 cut(s) 200, 238
LguI GCTCTTC 1 cut(s) 858
LmnI GCTCC 1 cut(s) 839
LpnPI CCDG 6 cut(s) 358, 490, 507, 535, 771, 834
Lsp1109I GCAGC 2 cut(s) 416, 841
LweI GCATC 3 cut(s) 200, 790, 835
MaeII ACGT 3 cut(s) 296, 420, 824
MaeIII GTNAC 2 cut(s) 40, 496
MalI GATC 2 cut(s) 202, 240
MboI GATC 2 cut(s) 200, 238
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 4 cut(s) 151, 460, 502, 577
MlyI GAGTC 3 cut(s) 622, 661, 682
MmeI TCCRAC 3 cut(s) 317, 318, 413
MroNI GCCGGC 1 cut(s) 476
MseI TTAA 2 cut(s) 438, 546
MspI CCGG 2 cut(s) 477, 758
MwoI GCNNNNNNNGC 8 cut(s) 65, 401, 410, 431, 536, 626, 698, 865
NaeI GCCGGC 1 cut(s) 478
NdeII GATC 2 cut(s) 200, 238
NgoMIV GCCGGC 1 cut(s) 476
NlaIII CATG 1 cut(s) 419
NlaIV GGNNCC 1 cut(s) 841
NmeAIII GCCGAG 3 cut(s) 378, 631, 636
NmuCI GTSAC 1 cut(s) 496
PaeR7I CTCGAG 1 cut(s) 408
PagI TCATGA 1 cut(s) 415
PciSI GCTCTTC 1 cut(s) 858
PcsI WCGNNNNNNNCGW 4 cut(s) 662, 692, 701, 710
PdiI GCCGGC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 369, 557
PkrI GCNGC 6 cut(s) 406, 427, 526, 529, 541, 831
PleI GAGTC 3 cut(s) 621, 661, 681
PmaCI CACGTG 1 cut(s) 825
PmlI CACGTG 1 cut(s) 825
PpsI GAGTC 3 cut(s) 621, 661, 681
Ppu21I YACGTR 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 415
PspCI CACGTG 1 cut(s) 825
PspFI CCCAGC 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 841
PspXI VCTCGAGB 1 cut(s) 408
RsaI GTAC 2 cut(s) 445, 718
RsaNI GTAC 2 cut(s) 444, 717
SacI GAGCTC 1 cut(s) 415
SapI GCTCTTC 1 cut(s) 858
SaqAI TTAA 2 cut(s) 438, 546
SatI GCNGC 6 cut(s) 405, 426, 525, 528, 540, 830
Sau3AI GATC 2 cut(s) 200, 238
SchI GAGTC 3 cut(s) 622, 661, 682
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 3 cut(s) 200, 790, 835
Sfr274I CTCGAG 1 cut(s) 408
SlaI CTCGAG 1 cut(s) 408
SmlI CTYRAG 2 cut(s) 36, 408
SmoI CTYRAG 2 cut(s) 36, 408
Sse9I AATT 4 cut(s) 151, 460, 502, 577
SsiI CCGC 8 cut(s) 57, 66, 93, 99, 425, 525, 528, 539
SstI GAGCTC 1 cut(s) 415
TaaI ACNGT 3 cut(s) 248, 278, 731
TaiI ACGT 3 cut(s) 299, 423, 827
TaqI TCGA 4 cut(s) 196, 409, 616, 704
TaqII GACCGA 1 cut(s) 550
TasI AATT 4 cut(s) 151, 460, 502, 577
TauI GCSGC 4 cut(s) 428, 527, 530, 542
TfiI GAWTC 2 cut(s) 369, 557
Tru1I TTAA 2 cut(s) 438, 546
Tru9I TTAA 2 cut(s) 438, 546
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 2 cut(s) 404, 829
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 2 cut(s) 211, 734
TspRI CASTG 1 cut(s) 736
XapI RAATTY 2 cut(s) 151, 502
XhoI CTCGAG 1 cut(s) 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.