Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022454.1

Orthogroup ID

OG0012492

Physical Location & Seq

Genomic Coordinates Forward (+)

4438 .. 5223

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022454.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

atggctaagaaaatcaacatagagagtgatgctcaagcaaacctccacacatcctcttcttcctcctcctcctcctcctcaaccttgacaacccatgattctttgatcgataaaagcacagagaatgatcagaattcagacaaggtctcaagctcaaaagggcaagagctaaacaatgggagtaatgagcctaacaccaagaagaggcagaggagcagcagcactgaacatggcgatggaggcaggcacccgacttttcggggagtacgaatgcgctcttggggcaaatgggtgtccgaaatccgcgagccgaggaagaagtcaagaatttggttagggacatacccaacagctgaaatggcagcccgagcgcacgatgtggctgctcgggctatcaaaggtgcttctgcttatctaaatttccctgaattggctcaaacgcttccacaaccggcttctgcttctcccaaggacattcaagctgctgctgcaaaagctgcttctgcttttgaggaggtgaagaaatgtgaagctgaaacggaagaagaagaagaagaggaagcaacactgcccagcaaagatgaacagacaactactactgctaatactagtatcagtacagcttgttcttcatcttccacttcaaatgattatgatgataagttgtttgaccttccagatcttttcatggatggcacaaatgggagtgatcaattttgcttttcttcttcatcatcatttttttatgttgaaatgactattttagccctcaagggtcagacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

261

Amino Acids

28.32

Weight (kDa)

5.17

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44940
fragaria_vesca	FvH4_7g09550
malus_domestica	MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica	Prupe.2G123200_v2.0.a1
pyrus_communis	pycom07g08150 pycom1310g00030
rosa_chinensis	RchiOBHm_Chr1g0346421
rosa_laevigata	RLG00000007751 RLG00000028801
rosa_multiflora	Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308600
rosa_rugosa	Rorug01G0179600
rosa_samantha	Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana	Rw1G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	304
AcsI	RAATTY	3 cut(s)	133, 327, 418
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	2 cut(s)	267, 619
AfiI	CCNNNNNNNGG	2 cut(s)	204, 430
AgsI	TTSAA	3 cut(s)	479, 645, 752
AhlI	ACTAGT	1 cut(s)	608
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	7 cut(s)	153, 169, 353, 482, 497, 533, 623
AluI	AGCT	7 cut(s)	153, 169, 353, 482, 497, 533, 623
Alw26I	GTCTC	1 cut(s)	151
Ama87I	CYCGRG	2 cut(s)	366, 387
ApeKI	GCWGC	8 cut(s)	216, 219, 362, 383, 482, 485, 488, 497
ApoI	RAATTY	3 cut(s)	133, 327, 418
AspLEI	GCGC	2 cut(s)	276, 373
AsuHPI	GGTGA	1 cut(s)	529
AvaI	CYCGRG	2 cut(s)	366, 387
BanI	GGYRCC	1 cut(s)	246
BbvI	GCAGC	8 cut(s)	228, 231, 370, 374, 469, 472, 475, 484
BccI	CCATC	2 cut(s)	230, 686
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BclI	TGATCA	2 cut(s)	127, 709
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	1 cut(s)	609
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	8 cut(s)	217, 220, 363, 384, 483, 486, 489, 498
BlsI	GCNGC	8 cut(s)	218, 221, 364, 385, 484, 487, 490, 499
BmeT110I	CYCGRG	2 cut(s)	366, 387
BmiI	GGNNCC	1 cut(s)	248
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	3 cut(s)	18, 133, 755
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	311, 468
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 430
Bse118I	RCCGGY	1 cut(s)	451
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	311, 468
BseGI	GGATG	2 cut(s)	50, 697
BseLI	CCNNNNNNNGG	2 cut(s)	204, 430
BseRI	GAGGAG	7 cut(s)	55, 58, 61, 64, 67, 226, 527
BseXI	GCAGC	8 cut(s)	228, 231, 370, 374, 469, 472, 475, 484
BseYI	CCCAGC	1 cut(s)	572
Bsh1236I	CGCG	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	108
BsiHKCI	CYCGRG	2 cut(s)	366, 387
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	204, 430
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	2 cut(s)	366, 387
Bsp143I	GATC	4 cut(s)	105, 127, 679, 709
BspACI	CCGC	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	311, 468
BssMI	GATC	4 cut(s)	105, 127, 679, 709
BssT1I	CCWWGG	1 cut(s)	468
Bst6I	CTCTTC	3 cut(s)	61, 197, 549
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	245, 308
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	50, 697
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	276, 373
BstKTI	GATC	4 cut(s)	108, 130, 682, 712
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	105, 127, 679, 709
BstMWI	GCNNNNNNNGC	9 cut(s)	240, 282, 359, 368, 389, 488, 494, 497, 503
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	8 cut(s)	228, 231, 370, 374, 469, 472, 475, 484
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
Bsu15I	ATCGAT	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	50, 697
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	222, 566
Cac8I	GCNNGC	2 cut(s)	245, 308
CfoI	GCGC	2 cut(s)	276, 373
Cfr10I	RCCGGY	1 cut(s)	451
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	266, 618
CviAII	CATG	3 cut(s)	95, 230, 688
CviQI	GTAC	2 cut(s)	266, 618
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	4 cut(s)	107, 129, 681, 711
DpnII	GATC	4 cut(s)	105, 127, 679, 709
DraIII	CACNNNGTG	1 cut(s)	379
Eam1104I	CTCTTC	3 cut(s)	61, 197, 549
EarI	CTCTTC	3 cut(s)	61, 197, 549
Eco130I	CCWWGG	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	2 cut(s)	366, 387
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	3 cut(s)	98, 233, 691
FaiI	YATR	7 cut(s)	20, 96, 231, 343, 654, 689, 747
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	3 cut(s)	94, 229, 687
FbaI	TGATCA	2 cut(s)	127, 709
Fnu4HI	GCNGC	8 cut(s)	217, 220, 363, 384, 483, 486, 489, 498
FokI	GGATG	2 cut(s)	37, 704
Fsp4HI	GCNGC	8 cut(s)	217, 220, 363, 384, 483, 486, 489, 498
FspBI	CTAG	1 cut(s)	609
GlaI	GCGC	2 cut(s)	275, 372
GluI	GCNGC	8 cut(s)	217, 220, 363, 384, 483, 486, 489, 498
GsaI	CCCAGC	1 cut(s)	576
HapII	CCGG	1 cut(s)	452
HhaI	GCGC	2 cut(s)	276, 373
Hin1II	CATG	3 cut(s)	98, 233, 691
Hin6I	GCGC	2 cut(s)	274, 371
HinP1I	GCGC	2 cut(s)	274, 371
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	1 cut(s)	529
Hpy188I	TCNGA	4 cut(s)	132, 139, 298, 780
Hpy188III	TCNNGA	2 cut(s)	324, 677
HpyAV	CCTTC	1 cut(s)	683
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	9 cut(s)	240, 282, 359, 368, 389, 488, 494, 497, 503
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	98, 233, 691
HspAI	GCGC	2 cut(s)	274, 371
Ksp22I	TGATCA	2 cut(s)	127, 709
Kzo9I	GATC	4 cut(s)	105, 127, 679, 709
LmnI	GCTCC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	229, 438, 465, 586, 690
Lsp1109I	GCAGC	8 cut(s)	228, 231, 370, 374, 469, 472, 475, 484
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	609
MalI	GATC	4 cut(s)	107, 129, 681, 711
MboI	GATC	4 cut(s)	105, 127, 679, 709
MflI	RGATCY	1 cut(s)	679
MluCI	AATT	5 cut(s)	133, 327, 418, 428, 713
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	276
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	9 cut(s)	240, 282, 359, 368, 389, 488, 494, 497, 503
NdeII	GATC	4 cut(s)	105, 127, 679, 709
NlaIII	CATG	3 cut(s)	98, 233, 691
NlaIV	GGNNCC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	336
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	98
PflFI	GACNNNGTC	1 cut(s)	143
PkrI	GCNGC	8 cut(s)	218, 221, 364, 385, 484, 487, 490, 499
PspFI	CCCAGC	1 cut(s)	572
PspN4I	GGNNCC	1 cut(s)	248
PsrI	GAACNNNNNNTAC	2 cut(s)	610, 642
PsuI	RGATCY	1 cut(s)	679
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	267, 619
RsaNI	GTAC	2 cut(s)	266, 618
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	8 cut(s)	217, 220, 363, 384, 483, 486, 489, 498
Sau3AI	GATC	4 cut(s)	105, 127, 679, 709
SfaNI	GCATC	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	3 cut(s)	33, 148, 770
SmoI	CTYRAG	3 cut(s)	33, 148, 770
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	5 cut(s)	133, 327, 418, 428, 713
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	468
TaqI	TCGA	1 cut(s)	108
TasI	AATT	5 cut(s)	133, 327, 418, 428, 713
TatI	WGTACW	1 cut(s)	617
TfiI	GAWTC	1 cut(s)	98
TscAI	CASTG	2 cut(s)	229, 573
TseI	GCWGC	8 cut(s)	216, 219, 362, 383, 482, 485, 488, 497
TspDTI	ATGAA	4 cut(s)	597, 621, 676, 720
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	229, 573
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	3 cut(s)	133, 327, 418
XspI	CTAG	1 cut(s)	609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.