Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012492

Physical Location & Seq

Genomic Coordinates Forward (+)

24660615 .. 24664457

Gene Structure 3843 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0179600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACCAACCCAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGAGAGTTAAGTGCCCAACTACAGAGCAAATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAGGCAGATGAAGAGGTGTAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGATGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTTTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGGCCAGGCAGTGTTGACCCGTATTTCTCCTCACCCTTCACTACTAGTACCAGTACTACTTTCTTTGGCAGGAATGAAGAACAAACTTCCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTGTTCCCCATGCACGATGAGGACATTGGCAACAAGAAGACTCCTTCCGAGGGAGGTAGCAGCTATGATGACTACTCAGGTGGCGGCTACAACGGTGGCTCTCGCATTGTTCTTGAGCTCAGCCTCAACTCCTCCGAATCTGCTGACATGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

265

Amino Acids

28.95

Weight (kDa)

4.58

Isoelectric Point (pI)

50.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	9.5e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44940
fragaria_vesca	FvH4_7g09550
malus_domestica	MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica	Prupe.2G123200_v2.0.a1
pyrus_communis	pycom07g08150 pycom1310g00030
rosa_chinensis	RchiOBHm_Chr1g0346421
rosa_laevigata	RLG00000007751 RLG00000028801
rosa_multiflora	Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308600
rosa_rugosa	Rorug01G0179600
rosa_samantha	Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana	Rw1G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	437
AciI	CCGC	1 cut(s)	726
AclWI	GGATC	9 cut(s)	165, 354, 367, 402, 415, 435, 448, 483, 496
AcsI	RAATTY	1 cut(s)	201
AfaI	GTAC	4 cut(s)	115, 352, 556, 562
AfiI	CCNNNNNNNGG	3 cut(s)	353, 437, 692
AgsI	TTSAA	1 cut(s)	632
AhlI	ACTAGT	3 cut(s)	338, 467, 551
AjnI	CCWGG	4 cut(s)	116, 346, 511, 621
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	5 cut(s)	31, 223, 434, 705, 760
AluI	AGCT	5 cut(s)	31, 223, 434, 705, 760
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	9 cut(s)	165, 354, 367, 402, 415, 435, 448, 483, 496
Ama87I	CYCGRG	1 cut(s)	285
AoxI	GGCC	2 cut(s)	428, 509
ApeKI	GCWGC	3 cut(s)	74, 317, 702
ApoI	RAATTY	1 cut(s)	201
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
Asp700I	GAANNNNTTC	2 cut(s)	340, 636
AspS9I	GGNCC	4 cut(s)	381, 428, 462, 509
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	3 cut(s)	410, 531, 611
AvaI	CYCGRG	1 cut(s)	285
AvaII	GGWCC	2 cut(s)	381, 462
BaeGI	GKGCMC	2 cut(s)	188, 330
BamHI	GGATCC	4 cut(s)	359, 407, 440, 488
BanII	GRGCYC	2 cut(s)	286, 762
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	86, 304, 714
BccI	CCATC	2 cut(s)	395, 419
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	4 cut(s)	118, 348, 513, 623
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	3 cut(s)	338, 467, 551
BfaI	CTAG	3 cut(s)	339, 468, 552
BfmI	CTRYAG	1 cut(s)	192
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	4 cut(s)	75, 318, 703, 727
BlpI	GCTNAGC	1 cut(s)	761
BlsI	GCNGC	4 cut(s)	76, 319, 704, 728
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	5 cut(s)	79, 118, 348, 513, 623
Bme18I	GGWCC	2 cut(s)	381, 462
BmeT110I	CYCGRG	1 cut(s)	285
BmgT120I	GGNCC	4 cut(s)	381, 428, 462, 509
BmiI	GGNNCC	8 cut(s)	6, 269, 361, 382, 409, 442, 463, 490
BmrFI	CCNGG	5 cut(s)	79, 118, 348, 513, 623
BpiI	GAAGAC	1 cut(s)	686
BpmI	CTGGAG	2 cut(s)	117, 203
Bpu1102I	GCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	3 cut(s)	137, 306, 776
BpuMI	CCSGG	1 cut(s)	79
BsaJI	CCNNGG	3 cut(s)	330, 597, 690
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 437, 692
Bse1I	ACTGG	6 cut(s)	229, 358, 391, 400, 481, 558
BseBI	CCWGG	4 cut(s)	118, 348, 513, 623
BseDI	CCNNGG	3 cut(s)	330, 597, 690
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	3 cut(s)	353, 437, 692
BseMII	CTCAG	2 cut(s)	732, 775
BseNI	ACTGG	6 cut(s)	229, 358, 391, 400, 481, 558
BseRI	GAGGAG	3 cut(s)	526, 624, 763
BseSI	GKGCMC	2 cut(s)	188, 330
BseXI	GCAGC	3 cut(s)	86, 304, 714
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	2 cut(s)	430, 511
BsiHKAI	GWGCWC	1 cut(s)	762
BsiHKCI	CYCGRG	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	3 cut(s)	353, 437, 692
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	430, 511
BsoBI	CYCGRG	1 cut(s)	285
Bsp1286I	GDGCHC	4 cut(s)	188, 286, 330, 762
Bsp1720I	GCTNAGC	1 cut(s)	761
Bsp19I	CCATGG	2 cut(s)	330, 597
BspACI	CCGC	1 cut(s)	726
BspANI	GGCC	2 cut(s)	430, 511
BspCNI	CTCAG	2 cut(s)	731, 774
BspLI	GGNNCC	8 cut(s)	6, 269, 361, 382, 409, 442, 463, 490
BspPI	GGATC	9 cut(s)	165, 354, 367, 402, 415, 435, 448, 483, 496
BsrI	ACTGG	6 cut(s)	229, 358, 391, 400, 481, 558
BssECI	CCNNGG	3 cut(s)	330, 597, 690
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	330, 597
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	4 cut(s)	118, 348, 513, 623
Bst4CI	ACNGT	2 cut(s)	645, 737
Bst6I	CTCTTC	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	718, 761, 795
BstDSI	CCRYGG	2 cut(s)	330, 597
BstF5I	GGATG	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	221
BstMWI	GCNNNNNNNGC	1 cut(s)	791
BstNI	CCWGG	4 cut(s)	118, 348, 513, 623
BstSCI	CCNGG	5 cut(s)	77, 116, 346, 511, 621
BstSFI	CTRYAG	1 cut(s)	192
BstSLI	GKGCMC	2 cut(s)	188, 330
BstV1I	GCAGC	3 cut(s)	86, 304, 714
BstV2I	GAAGAC	1 cut(s)	686
BstX2I	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BstYI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
BsuRI	GGCC	2 cut(s)	430, 511
BtgI	CCRYGG	2 cut(s)	330, 597
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	3 cut(s)	384, 523, 641
Cac8I	GCNNGC	1 cut(s)	432
Cfr13I	GGNCC	4 cut(s)	381, 428, 462, 509
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	4 cut(s)	114, 351, 555, 561
CviAII	CATG	4 cut(s)	331, 598, 652, 790
CviQI	GTAC	4 cut(s)	114, 351, 555, 561
DdeI	CTNAG	3 cut(s)	718, 761, 795
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Ecl136II	GAGCTC	1 cut(s)	760
Eco130I	CCWWGG	2 cut(s)	330, 597
Eco24I	GRGCYC	2 cut(s)	286, 762
Eco47I	GGWCC	2 cut(s)	381, 462
Eco53kI	GAGCTC	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	760
EcoRII	CCWGG	4 cut(s)	116, 346, 511, 621
EcoT14I	CCWWGG	2 cut(s)	330, 597
EcoT38I	GRGCYC	2 cut(s)	286, 762
ErhI	CCWWGG	2 cut(s)	330, 597
FaeI	CATG	4 cut(s)	334, 601, 655, 793
FaiI	YATR	6 cut(s)	234, 332, 599, 653, 708, 791
FatI	CATG	4 cut(s)	330, 597, 651, 789
Fnu4HI	GCNGC	4 cut(s)	75, 318, 703, 727
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	2 cut(s)	286, 762
Fsp4HI	GCNGC	4 cut(s)	75, 318, 703, 727
FspBI	CTAG	3 cut(s)	339, 468, 552
GluI	GCNGC	4 cut(s)	75, 318, 703, 727
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HaeIII	GGCC	2 cut(s)	430, 511
HapII	CCGG	1 cut(s)	78
Hin1II	CATG	4 cut(s)	334, 601, 655, 793
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	4 cut(s)	124, 147, 682, 779
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	3 cut(s)	410, 531, 611
Hpy166II	GTNNAC	3 cut(s)	384, 465, 523
Hpy188I	TCNGA	2 cut(s)	691, 778
Hpy188III	TCNNGA	5 cut(s)	134, 206, 271, 287, 755
Hpy8I	GTNNAC	3 cut(s)	384, 465, 523
HpyAV	CCTTC	3 cut(s)	553, 647, 696
HpyCH4III	ACNGT	2 cut(s)	645, 737
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	2 cut(s)	19, 655
HpyF10VI	GCNNNNNNNGC	1 cut(s)	791
HpyF3I	CTNAG	3 cut(s)	718, 761, 795
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	334, 601, 655, 793
LmnI	GCTCC	1 cut(s)	28
Lsp1109I	GCAGC	3 cut(s)	86, 304, 714
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	3 cut(s)	339, 468, 552
MaeII	ACGT	1 cut(s)	276
MboII	GAAGA	4 cut(s)	313, 596, 626, 691
MflI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
MhlI	GDGCHC	4 cut(s)	188, 286, 330, 762
MluCI	AATT	5 cut(s)	201, 373, 421, 454, 502
MlyI	GAGTC	1 cut(s)	676
MroXI	GAANNNNTTC	2 cut(s)	340, 636
MseI	TTAA	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	223, 434
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	5 cut(s)	79, 118, 348, 513, 623
MvaI	CCWGG	4 cut(s)	118, 348, 513, 623
MwoI	GCNNNNNNNGC	1 cut(s)	791
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	2 cut(s)	330, 597
NlaIII	CATG	4 cut(s)	334, 601, 655, 793
NlaIV	GGNNCC	8 cut(s)	6, 269, 361, 382, 409, 442, 463, 490
PaeR7I	CTCGAG	1 cut(s)	285
PdmI	GAANNNNTTC	2 cut(s)	340, 636
PfeI	GAWTC	3 cut(s)	124, 147, 779
PflMI	CCANNNNNTGG	1 cut(s)	437
PkrI	GCNGC	4 cut(s)	76, 319, 704, 728
PleI	GAGTC	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	676
Psp124BI	GAGCTC	1 cut(s)	762
Psp6I	CCWGG	4 cut(s)	116, 346, 511, 621
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	4 cut(s)	116, 346, 511, 621
PspN4I	GGNNCC	8 cut(s)	6, 269, 361, 382, 409, 442, 463, 490
PspPI	GGNCC	4 cut(s)	381, 428, 462, 509
PsuI	RGATCY	6 cut(s)	157, 210, 359, 407, 440, 488
PvuII	CAGCTG	2 cut(s)	223, 434
RsaI	GTAC	4 cut(s)	115, 352, 556, 562
RsaNI	GTAC	4 cut(s)	114, 351, 555, 561
SacI	GAGCTC	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	4 cut(s)	75, 318, 703, 727
Sau96I	GGNCC	4 cut(s)	381, 428, 462, 509
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	676
ScrFI	CCNGG	5 cut(s)	79, 118, 348, 513, 623
SduI	GDGCHC	4 cut(s)	188, 286, 330, 762
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	1 cut(s)	192
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	381, 462
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	152, 285, 321, 755
SmoI	CTYRAG	4 cut(s)	152, 285, 321, 755
SpeI	ACTAGT	3 cut(s)	338, 467, 551
Sse9I	AATT	5 cut(s)	201, 373, 421, 454, 502
SsiI	CCGC	1 cut(s)	726
SspMI	CTAG	3 cut(s)	339, 468, 552
SstI	GAGCTC	1 cut(s)	762
StyD4I	CCNGG	5 cut(s)	77, 116, 346, 511, 621
StyI	CCWWGG	2 cut(s)	330, 597
TaaI	ACNGT	2 cut(s)	645, 737
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	51, 286, 414
TasI	AATT	5 cut(s)	201, 373, 421, 454, 502
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	1 cut(s)	729
TfiI	GAWTC	3 cut(s)	124, 147, 779
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TscAI	CASTG	3 cut(s)	391, 523, 648
TseI	GCWGC	3 cut(s)	74, 317, 702
TspDTI	ATGAA	2 cut(s)	314, 597
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	3 cut(s)	391, 523, 648
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	2 cut(s)	381, 462
XapI	RAATTY	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	285
XmnI	GAANNNNTTC	2 cut(s)	340, 636
XspI	CTAG	3 cut(s)	339, 468, 552
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.