Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003363.1

Orthogroup ID

OG0012492

Physical Location & Seq

Genomic Coordinates Reverse (-)

356714 .. 357792

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003363.1_g000069.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atggctaagaaaatcaacatagagagtgatgctcaagcaaacctccacacatcctcttcgtcctcctcctcctcctcctcaaccttgacaacccatgattctttgatcgataaaagcacagagaatgatcagaattcagacaaggtctcaagctcaaaagggcaagagctaaacaatgggagtaatgagcctaacaccaagaagaggcagaggagcagcagcactgatcatggcgatggaggcaggcacccgacttttcggggagtacgaatgcgctcttggggcaaatgggtgtccgaaatccgcgagccgaggaagaagtcaagaatttggttagggacatacccaacagctgaaatggcagcccgagcgcacgatgtggctgctcgggctatcaaaggtgcttctgcttatctaaatttccctgaattggctcaaacgcttccacaaccggcttctgcttctcccaaggacattcaagctgctgctgcaaaagctgcttctgcttttgaggagtacagcttgttcttcatcttccacctggctgctcgggctatcaaaggtgcttctgcttatctaaatttccctgaattggctcaaacgcttccacaaccggcttctgcttctcccaaggacattcaagctgctgctgcaaaagctgcttctgcttttgaggaggtgaagaaatgtgaagctgaaacggaagaagaagaagaagaggaagcaacactgcccagcaaagatgaacagacaactactactgctaatactagtatcagtacagcttgttcttcatcttccacttcaaatgattatgatgataagttgtttgaccttccagatcttttcatggatggcacaaatgggagtgatcaattttgcttttcttcttcatcatcatcatggcatctgtgtgcagcagatactggattcagactagaagagccattcttgtgggagtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

321

Amino Acids

34.81

Weight (kDa)

5.14

Isoelectric Point (pI)

54.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44940
fragaria_vesca	FvH4_7g09550
malus_domestica	MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica	Prupe.2G123200_v2.0.a1
pyrus_communis	pycom07g08150 pycom1310g00030
rosa_chinensis	RchiOBHm_Chr1g0346421
rosa_laevigata	RLG00000007751 RLG00000028801
rosa_multiflora	Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308600
rosa_rugosa	Rorug01G0179600
rosa_samantha	Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana	Rw1G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccII	CGCG	1 cut(s)	306
AciI	CCGC	1 cut(s)	304
AcsI	RAATTY	4 cut(s)	133, 327, 418, 580
AdeI	CACNNNGTG	1 cut(s)	379
AfaI	GTAC	3 cut(s)	267, 518, 781
AfiI	CCNNNNNNNGG	3 cut(s)	204, 430, 592
AgsI	TTSAA	3 cut(s)	479, 641, 807
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	540
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
Alw26I	GTCTC	1 cut(s)	151
AlwNI	CAGNNNCTG	1 cut(s)	926
Ama87I	CYCGRG	3 cut(s)	366, 387, 549
ApoI	RAATTY	4 cut(s)	133, 327, 418, 580
AspLEI	GCGC	2 cut(s)	276, 373
AsuHPI	GGTGA	1 cut(s)	691
AvaI	CYCGRG	3 cut(s)	366, 387, 549
BanI	GGYRCC	1 cut(s)	246
BccI	CCATC	2 cut(s)	230, 848
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	542
BclI	TGATCA	3 cut(s)	127, 226, 871
BcoDI	GTCTC	1 cut(s)	151
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	2 cut(s)	771, 938
BglII	AGATCT	1 cut(s)	841
Bme1390I	CCNGG	1 cut(s)	542
BmeT110I	CYCGRG	3 cut(s)	366, 387, 549
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	542
BmsI	GCATC	2 cut(s)	19, 916
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
BpuEI	CTTGAG	2 cut(s)	18, 133
Bsa29I	ATCGAT	1 cut(s)	108
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	3 cut(s)	311, 468, 630
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 430, 592
Bse118I	RCCGGY	2 cut(s)	451, 613
Bse1I	ACTGG	1 cut(s)	931
BseBI	CCWGG	1 cut(s)	542
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	3 cut(s)	311, 468, 630
BseGI	GGATG	2 cut(s)	50, 859
BseLI	CCNNNNNNNGG	3 cut(s)	204, 430, 592
BseNI	ACTGG	1 cut(s)	931
BseRI	GAGGAG	8 cut(s)	55, 58, 61, 64, 67, 226, 527, 689
BseYI	CCCAGC	1 cut(s)	734
BsgI	GTGCAG	1 cut(s)	936
Bsh1236I	CGCG	1 cut(s)	306
BshNI	GGYRCC	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	108
BsiHKCI	CYCGRG	3 cut(s)	366, 387, 549
BsiSI	CCGG	2 cut(s)	452, 614
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	3 cut(s)	204, 430, 592
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	276
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	3 cut(s)	366, 387, 549
Bsp143I	GATC	5 cut(s)	105, 127, 226, 841, 871
BspACI	CCGC	1 cut(s)	304
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	248
BspQI	GCTCTTC	1 cut(s)	936
BspT107I	GGYRCC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	151
BsrFI	RCCGGY	2 cut(s)	451, 613
BsrI	ACTGG	1 cut(s)	931
BssAI	RCCGGY	2 cut(s)	451, 613
BssECI	CCNNGG	3 cut(s)	311, 468, 630
BssMI	GATC	5 cut(s)	105, 127, 226, 841, 871
BssT1I	CCWWGG	2 cut(s)	468, 630
Bst2UI	CCWGG	1 cut(s)	542
Bst6I	CTCTTC	4 cut(s)	61, 197, 711, 936
BstAPI	GCANNNNNTGC	2 cut(s)	497, 659
BstC8I	GCNNGC	2 cut(s)	245, 308
BstDEI	CTNAG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	50, 859
BstFNI	CGCG	1 cut(s)	306
BstHHI	GCGC	2 cut(s)	276, 373
BstKTI	GATC	5 cut(s)	108, 130, 229, 844, 874
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	5 cut(s)	105, 127, 226, 841, 871
BstNI	CCWGG	1 cut(s)	542
BstSCI	CCNGG	1 cut(s)	540
BstUI	CGCG	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	841
BstXI	CCANNNNNNTGG	1 cut(s)	954
BstYI	RGATCY	1 cut(s)	841
Bsu15I	ATCGAT	1 cut(s)	108
BsuTUI	ATCGAT	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	50, 859
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	2 cut(s)	222, 728
Cac8I	GCNNGC	2 cut(s)	245, 308
CaiI	CAGNNNCTG	1 cut(s)	926
CfoI	GCGC	2 cut(s)	276, 373
Cfr10I	RCCGGY	2 cut(s)	451, 613
ClaI	ATCGAT	1 cut(s)	108
Csp6I	GTAC	3 cut(s)	266, 517, 780
CviAII	CATG	4 cut(s)	95, 230, 850, 903
CviQI	GTAC	3 cut(s)	266, 517, 780
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	5 cut(s)	107, 129, 228, 843, 873
DpnII	GATC	5 cut(s)	105, 127, 226, 841, 871
DraIII	CACNNNGTG	1 cut(s)	379
Eam1104I	CTCTTC	4 cut(s)	61, 197, 711, 936
EarI	CTCTTC	4 cut(s)	61, 197, 711, 936
Eco130I	CCWWGG	2 cut(s)	468, 630
Eco31I	GGTCTC	1 cut(s)	151
Eco88I	CYCGRG	3 cut(s)	366, 387, 549
EcoRI	GAATTC	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	540
EcoT14I	CCWWGG	2 cut(s)	468, 630
ErhI	CCWWGG	2 cut(s)	468, 630
FaeI	CATG	4 cut(s)	98, 233, 853, 906
FaiI	YATR	7 cut(s)	20, 96, 231, 343, 816, 851, 904
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	4 cut(s)	94, 229, 849, 902
FbaI	TGATCA	3 cut(s)	127, 226, 871
FokI	GGATG	2 cut(s)	37, 866
FspBI	CTAG	2 cut(s)	771, 938
GlaI	GCGC	2 cut(s)	275, 372
GsaI	CCCAGC	1 cut(s)	738
HapII	CCGG	2 cut(s)	452, 614
HhaI	GCGC	2 cut(s)	276, 373
Hin1II	CATG	4 cut(s)	98, 233, 853, 906
Hin6I	GCGC	2 cut(s)	274, 371
HinP1I	GCGC	2 cut(s)	274, 371
HinfI	GANTC	2 cut(s)	98, 930
HpaII	CCGG	2 cut(s)	452, 614
HphI	GGTGA	1 cut(s)	691
Hpy188I	TCNGA	4 cut(s)	132, 139, 298, 935
Hpy188III	TCNNGA	2 cut(s)	324, 839
HpyAV	CCTTC	1 cut(s)	845
HpyCH4V	TGCA	3 cut(s)	491, 653, 917
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	98, 233, 853, 906
HspAI	GCGC	2 cut(s)	274, 371
Ksp22I	TGATCA	3 cut(s)	127, 226, 871
Kzo9I	GATC	5 cut(s)	105, 127, 226, 841, 871
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	1 cut(s)	213
LweI	GCATC	2 cut(s)	19, 916
MaeI	CTAG	2 cut(s)	771, 938
MalI	GATC	5 cut(s)	107, 129, 228, 843, 873
MboI	GATC	5 cut(s)	105, 127, 226, 841, 871
MflI	RGATCY	1 cut(s)	841
MluCI	AATT	7 cut(s)	133, 327, 418, 428, 580, 590, 875
MseI	TTAA	1 cut(s)	964
MslI	CAYNNNNRTG	4 cut(s)	234, 901, 912, 952
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	2 cut(s)	452, 614
MspR9I	CCNGG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	542
MvnI	CGCG	1 cut(s)	306
NdeII	GATC	5 cut(s)	105, 127, 226, 841, 871
NlaIII	CATG	4 cut(s)	98, 233, 853, 906
NlaIV	GGNNCC	1 cut(s)	248
NmeAIII	GCCGAG	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	1 cut(s)	265
PctI	GAATGC	1 cut(s)	276
PfeI	GAWTC	2 cut(s)	98, 930
PflFI	GACNNNGTC	1 cut(s)	143
Psp6I	CCWGG	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	540
PspN4I	GGNNCC	1 cut(s)	248
PsrI	GAACNNNNNNTAC	4 cut(s)	509, 541, 772, 804
PstNI	CAGNNNCTG	1 cut(s)	926
PsuI	RGATCY	1 cut(s)	841
PsyI	GACNNNGTC	1 cut(s)	143
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	3 cut(s)	267, 518, 781
RsaNI	GTAC	3 cut(s)	266, 517, 780
RseI	CAYNNNNRTG	4 cut(s)	234, 901, 912, 952
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	1 cut(s)	964
Sau3AI	GATC	5 cut(s)	105, 127, 226, 841, 871
ScrFI	CCNGG	1 cut(s)	542
SfaNI	GCATC	2 cut(s)	19, 916
SmiMI	CAYNNNNRTG	4 cut(s)	234, 901, 912, 952
SmlI	CTYRAG	2 cut(s)	33, 148
SmoI	CTYRAG	2 cut(s)	33, 148
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	7 cut(s)	133, 327, 418, 428, 580, 590, 875
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	771, 938
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	2 cut(s)	468, 630
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	133, 327, 418, 428, 580, 590, 875
TatI	WGTACW	2 cut(s)	516, 779
TfiI	GAWTC	2 cut(s)	98, 930
Tru1I	TTAA	1 cut(s)	964
Tru9I	TTAA	1 cut(s)	964
TscAI	CASTG	2 cut(s)	229, 735
TspDTI	ATGAA	5 cut(s)	520, 759, 783, 838, 882
TspGWI	ACGGA	1 cut(s)	716
TspRI	CASTG	2 cut(s)	229, 735
Tth111I	GACNNNGTC	1 cut(s)	143
XapI	RAATTY	4 cut(s)	133, 327, 418, 580
XspI	CTAG	2 cut(s)	771, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.