Rh1CG184100

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012492
Physical Location & Seq
Reverse (-)
40408170 .. 40409895
1726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG184100.1

Sequence Viewer

Length: 813 bp
ATGGCTAAGAAAATCAACATAGAGAGTGATGCTCAAGCAAACCTCCACACCTCCTCTTCTTCCTCCTCCTCCTCCTCAACCTTGACAATCCATGATTCTTTGATCGATAAAAGCACAGAGAATGATCAGAATTCAGACAAGGTCTCAAGCTCAAAAGGGCAAGAGCTAAACAATGGGAGTAATGAGCCTAACACCAAGAAGAGGCAGAGGAGCAACAACACTGATCATGGCGATGGAGGCAGGCACCCGACTTTTCGGGGAGTACGAATGCGCTCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGAGGAAGAAGTCAAGAATTTGGTTAGGGACATACCCAACAGCTGAAATGGCAGCCCGAGCGCACGATGTGGCTGCTCGGGCTATCAAAGGTGCTTCTGCTTATCTAAATTTCCCTGAATTGGCTCAAACGCTTCCACAACCGGCTTCTGCTTCTCCCAAGGACATTCAAGCTGCTGCTGCAAAAGCTGCTTCTGCTTTTGAGGAGGTGAAGAAATGTGAAGCTGAAACGGAAGAAGAAGAAGAAGAGGAAGCAACACTGCCCAGCAAAGATGAACAGACAACTACTACTGCTAATACTAGTATCAGTACTAGTAATAGTACAGCTTGTTCTTCATCTTCCACTTCAAATGATTATGATGATAAATTGTTTGACCTTCCAGATCTTTTCATGGATGGCACAAATGGGAGTGATCAATTTTGCTTTTCTTCTTCATCATCATCATGGCATCTGTGTGCAGCAGATACTGGATTCAGACAAGAAGAGCCATTCTTGTGGGAGTATTAA

Protein Analysis

270

Amino Acids

29.5

Weight (kDa)

5.02

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 84 - 133 3.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44940
fragaria_vesca FvH4_7g09550
malus_domestica MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica Prupe.2G123200_v2.0.a1
pyrus_communis pycom07g08150 pycom1310g00030
rosa_chinensis RchiOBHm_Chr1g0346421
rosa_laevigata RLG00000007751 RLG00000028801
rosa_multiflora Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii Rroxscaffold_4G00308600
rosa_rugosa Rorug01G0179600
rosa_samantha Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana Rw1G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccII CGCG 1 cut(s) 303
AciI CCGC 1 cut(s) 301
AcsI RAATTY 3 cut(s) 130, 324, 415
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 264, 616, 628
AfiI CCNNNNNNNGG 2 cut(s) 201, 427
AgsI TTSAA 2 cut(s) 476, 654
AhlI ACTAGT 2 cut(s) 605, 617
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 7 cut(s) 150, 166, 350, 479, 494, 530, 632
AluI AGCT 7 cut(s) 150, 166, 350, 479, 494, 530, 632
Alw26I GTCTC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 773
Ama87I CYCGRG 2 cut(s) 363, 384
ApeKI GCWGC 7 cut(s) 359, 380, 479, 482, 485, 494, 764
ApoI RAATTY 3 cut(s) 130, 324, 415
AspLEI GCGC 2 cut(s) 273, 370
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 363, 384
BanI GGYRCC 1 cut(s) 243
BbvI GCAGC 7 cut(s) 367, 371, 466, 469, 472, 481, 776
BccI CCATC 2 cut(s) 227, 695
BcgI CGANNNNNNTGC 2 cut(s) 362, 396
BclI TGATCA 3 cut(s) 124, 223, 718
BcoDI GTCTC 1 cut(s) 148
BcuI ACTAGT 2 cut(s) 605, 617
BfaI CTAG 2 cut(s) 606, 618
BglII AGATCT 1 cut(s) 688
BisI GCNGC 7 cut(s) 360, 381, 480, 483, 486, 495, 765
BlsI GCNGC 7 cut(s) 361, 382, 481, 484, 487, 496, 766
BmcAI AGTACT 1 cut(s) 616
BmeT110I CYCGRG 2 cut(s) 363, 384
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 2 cut(s) 19, 763
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpuEI CTTGAG 2 cut(s) 18, 130
Bsa29I ATCGAT 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 308, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 427
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 778
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 2 cut(s) 308, 465
BseGI GGATG 1 cut(s) 706
BseLI CCNNNNNNNGG 2 cut(s) 201, 427
BseNI ACTGG 1 cut(s) 778
BseRI GAGGAG 7 cut(s) 43, 55, 58, 61, 64, 223, 524
BseXI GCAGC 7 cut(s) 367, 371, 466, 469, 472, 481, 776
BseYI CCCAGC 1 cut(s) 569
BsgI GTGCAG 1 cut(s) 783
Bsh1236I CGCG 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 363, 384
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 201, 427
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 273
Bso31I GGTCTC 1 cut(s) 148
BsoBI CYCGRG 2 cut(s) 363, 384
Bsp143I GATC 5 cut(s) 102, 124, 223, 688, 718
BspACI CCGC 1 cut(s) 301
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 148
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 308, 465
BssMI GATC 5 cut(s) 102, 124, 223, 688, 718
BssT1I CCWWGG 1 cut(s) 465
Bst6I CTCTTC 4 cut(s) 61, 194, 546, 783
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 242, 305
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 706
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 2 cut(s) 273, 370
BstKTI GATC 5 cut(s) 105, 127, 226, 691, 721
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 5 cut(s) 102, 124, 223, 688, 718
BstMWI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 7 cut(s) 367, 371, 466, 469, 472, 481, 776
BstX2I RGATCY 1 cut(s) 688
BstXI CCANNNNNNTGG 1 cut(s) 801
BstYI RGATCY 1 cut(s) 688
Bsu15I ATCGAT 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 706
BtsI GCAGTG 1 cut(s) 563
BtsIMutI CAGTG 2 cut(s) 219, 563
Cac8I GCNNGC 2 cut(s) 242, 305
CaiI CAGNNNCTG 1 cut(s) 773
CfoI GCGC 2 cut(s) 273, 370
Cfr10I RCCGGY 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 3 cut(s) 263, 615, 627
CviAII CATG 4 cut(s) 92, 227, 697, 750
CviQI GTAC 3 cut(s) 263, 615, 627
DdeI CTNAG 1 cut(s) 6
DpnI GATC 5 cut(s) 104, 126, 225, 690, 720
DpnII GATC 5 cut(s) 102, 124, 223, 688, 718
DraIII CACNNNGTG 1 cut(s) 376
Eam1104I CTCTTC 4 cut(s) 61, 194, 546, 783
EarI CTCTTC 4 cut(s) 61, 194, 546, 783
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 148
Eco88I CYCGRG 2 cut(s) 363, 384
EcoRI GAATTC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 95, 230, 700, 753
FaiI YATR 7 cut(s) 20, 93, 228, 340, 663, 698, 751
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 91, 226, 696, 749
FbaI TGATCA 3 cut(s) 124, 223, 718
Fnu4HI GCNGC 7 cut(s) 360, 381, 480, 483, 486, 495, 765
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 7 cut(s) 360, 381, 480, 483, 486, 495, 765
FspBI CTAG 2 cut(s) 606, 618
GlaI GCGC 2 cut(s) 272, 369
GluI GCNGC 7 cut(s) 360, 381, 480, 483, 486, 495, 765
GsaI CCCAGC 1 cut(s) 573
HapII CCGG 1 cut(s) 449
HhaI GCGC 2 cut(s) 273, 370
Hin1II CATG 4 cut(s) 95, 230, 700, 753
Hin6I GCGC 2 cut(s) 271, 368
HinP1I GCGC 2 cut(s) 271, 368
HinfI GANTC 2 cut(s) 95, 777
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 4 cut(s) 129, 136, 295, 782
Hpy188III TCNNGA 2 cut(s) 321, 686
HpyAV CCTTC 1 cut(s) 692
HpyCH4V TGCA 2 cut(s) 488, 764
HpyF10VI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 95, 230, 700, 753
HspAI GCGC 2 cut(s) 271, 368
Ksp22I TGATCA 3 cut(s) 124, 223, 718
Kzo9I GATC 5 cut(s) 102, 124, 223, 688, 718
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 6 cut(s) 226, 435, 462, 583, 699, 759
Lsp1109I GCAGC 7 cut(s) 367, 371, 466, 469, 472, 481, 776
LweI GCATC 2 cut(s) 19, 763
MaeI CTAG 2 cut(s) 606, 618
MalI GATC 5 cut(s) 104, 126, 225, 690, 720
MboI GATC 5 cut(s) 102, 124, 223, 688, 718
MflI RGATCY 1 cut(s) 688
MluCI AATT 6 cut(s) 130, 324, 415, 425, 671, 722
MseI TTAA 1 cut(s) 811
MslI CAYNNNNRTG 4 cut(s) 231, 748, 759, 799
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 273
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
NdeII GATC 5 cut(s) 102, 124, 223, 688, 718
NlaIII CATG 4 cut(s) 95, 230, 700, 753
NlaIV GGNNCC 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 95, 777
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 7 cut(s) 361, 382, 481, 484, 487, 496, 766
PspFI CCCAGC 1 cut(s) 569
PspN4I GGNNCC 1 cut(s) 245
PsrI GAACNNNNNNTAC 2 cut(s) 619, 651
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 264, 616, 628
RsaNI GTAC 3 cut(s) 263, 615, 627
RseI CAYNNNNRTG 4 cut(s) 231, 748, 759, 799
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 811
SatI GCNGC 7 cut(s) 360, 381, 480, 483, 486, 495, 765
Sau3AI GATC 5 cut(s) 102, 124, 223, 688, 718
ScaI AGTACT 1 cut(s) 616
SfaNI GCATC 2 cut(s) 19, 763
SmiMI CAYNNNNRTG 4 cut(s) 231, 748, 759, 799
SmlI CTYRAG 2 cut(s) 33, 145
SmoI CTYRAG 2 cut(s) 33, 145
SpeI ACTAGT 2 cut(s) 605, 617
Sse9I AATT 6 cut(s) 130, 324, 415, 425, 671, 722
SsiI CCGC 1 cut(s) 301
SspMI CTAG 2 cut(s) 606, 618
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 130, 324, 415, 425, 671, 722
TatI WGTACW 2 cut(s) 614, 626
TfiI GAWTC 2 cut(s) 95, 777
Tru1I TTAA 1 cut(s) 811
Tru9I TTAA 1 cut(s) 811
TscAI CASTG 2 cut(s) 226, 570
TseI GCWGC 7 cut(s) 359, 380, 479, 482, 485, 494, 764
TspDTI ATGAA 4 cut(s) 594, 630, 685, 729
TspGWI ACGGA 1 cut(s) 551
TspRI CASTG 2 cut(s) 226, 570
Tth111I GACNNNGTC 1 cut(s) 140
XapI RAATTY 3 cut(s) 130, 324, 415
XspI CTAG 2 cut(s) 606, 618
ZrmI AGTACT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.