Rh1DG195600

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012492
Physical Location & Seq
Reverse (-)
38637414 .. 38639142
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG195600.1

Sequence Viewer

Length: 822 bp
ATGGCTAAGAAAATCAACATAGAGAGTGATGCTCAAGCAAACCTCCACACCTCCTCTTCTAACTCCTCCTCCTCCTCCTCCTCAACCTTGACAACCCATGATTCTTTGATCGATAAAAGCACAGAGAATGATCAAAATTCAGACAAGGTCTCAAGCTCAAAAGAGCTAAACAATGGGAGTAATGAGCCTAACACCAAGAAGAGGCAGAGGAGCAGCAACACTGATCATGGCGATGGAGGCAGGCACCCGACTTTTCGGGGAGTACGAATGCGCTCTTGGGGCAAATGGGTGTCCGAAATCCGCGAGCCGAGGAAGAAGTCAAGAATTTGGTTAGGGACATACCCAACAGCTGAAATGGCAGCCCGAGCGCACGATGTGGCCGCTCGGGCTATCAAAGGTGCTTCTGCTTATCTCAATTTCCCTGAATTGGCTCAAACGCTTCCACAACCGGCTTCTGCTTCTCCCAAGGACATTCAAGCGGCTGCTGCAAAAGCTGCTTCTGCGTTTGAGGAGGTGAAGAAATGTGAAGCTGAAATGGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGCAACACTGCCCAGCAAAGATGAACAGACAACTACTACTGCTAATACTAGTATTAGTACTAGTAATAGTACAGCTTGTTCTTCATCTTCCACTTCAAATGATTATGATGACAAATTGTTTGACCTTCCAGATCTTTTCATGGATGGCACAAATGGGAGTGATCAATTTTGCTTTTCTTCTTCATCATCATCATGGCATCTGTGTGCAGCAGATACTGGATTCAGACTAGAAGAGCCATTCTTGTGGGAGTATTAA

Protein Analysis

273

Amino Acids

29.88

Weight (kDa)

4.88

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 84 - 133 3.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44940
fragaria_vesca FvH4_7g09550
malus_domestica MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica Prupe.2G123200_v2.0.a1
pyrus_communis pycom07g08150 pycom1310g00030
rosa_chinensis RchiOBHm_Chr1g0346421
rosa_laevigata RLG00000007751 RLG00000028801
rosa_multiflora Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii Rroxscaffold_4G00308600
rosa_rugosa Rorug01G0179600
rosa_samantha Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana Rw1G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 383
AccII CGCG 1 cut(s) 303
AciI CCGC 3 cut(s) 301, 381, 479
AcoI YGGCCR 1 cut(s) 378
AcsI RAATTY 2 cut(s) 136, 324
AdeI CACNNNGTG 1 cut(s) 376
AfaI GTAC 3 cut(s) 264, 625, 637
AfiI CCNNNNNNNGG 2 cut(s) 201, 427
AgsI TTSAA 2 cut(s) 476, 663
AhlI ACTAGT 2 cut(s) 614, 626
AjuI GAANNNNNNNTTGG 2 cut(s) 259, 291
AluBI AGCT 6 cut(s) 156, 166, 350, 494, 530, 641
AluI AGCT 6 cut(s) 156, 166, 350, 494, 530, 641
Alw26I GTCTC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 2 cut(s) 363, 384
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 6 cut(s) 213, 359, 482, 485, 494, 773
ApoI RAATTY 2 cut(s) 136, 324
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AspLEI GCGC 2 cut(s) 273, 370
AsuHPI GGTGA 1 cut(s) 526
AvaI CYCGRG 2 cut(s) 363, 384
BanI GGYRCC 1 cut(s) 243
BbvI GCAGC 6 cut(s) 225, 371, 469, 472, 481, 785
BccI CCATC 2 cut(s) 227, 704
BclI TGATCA 3 cut(s) 130, 223, 727
BcoDI GTCTC 1 cut(s) 154
BcuI ACTAGT 2 cut(s) 614, 626
BfaI CTAG 3 cut(s) 615, 627, 794
BglI GCCNNNNNGGC 1 cut(s) 386
BglII AGATCT 1 cut(s) 697
BisI GCNGC 8 cut(s) 214, 360, 381, 480, 483, 486, 495, 774
BlsI GCNGC 8 cut(s) 215, 361, 382, 481, 484, 487, 496, 775
BmcAI AGTACT 1 cut(s) 625
BmeT110I CYCGRG 2 cut(s) 363, 384
BmiI GGNNCC 1 cut(s) 245
BmsI GCATC 2 cut(s) 19, 772
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpuEI CTTGAG 2 cut(s) 18, 136
Bsa29I ATCGAT 1 cut(s) 111
BsaI GGTCTC 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 308, 465
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 201, 427
Bse118I RCCGGY 1 cut(s) 448
Bse1I ACTGG 1 cut(s) 787
BseCI ATCGAT 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 308, 465
BseGI GGATG 1 cut(s) 715
BseLI CCNNNNNNNGG 2 cut(s) 201, 427
BseNI ACTGG 1 cut(s) 787
BseRI GAGGAG 9 cut(s) 43, 55, 58, 61, 64, 67, 70, 223, 524
BseXI GCAGC 6 cut(s) 225, 371, 469, 472, 481, 785
BseYI CCCAGC 1 cut(s) 578
BsgI GTGCAG 1 cut(s) 792
Bsh1236I CGCG 1 cut(s) 303
BshFI GGCC 1 cut(s) 380
BshNI GGYRCC 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 111
BsiHKCI CYCGRG 2 cut(s) 363, 384
BsiSI CCGG 1 cut(s) 449
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 2 cut(s) 201, 427
BsmAI GTCTC 1 cut(s) 154
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 273
BsnI GGCC 1 cut(s) 380
Bso31I GGTCTC 1 cut(s) 154
BsoBI CYCGRG 2 cut(s) 363, 384
Bsp143I GATC 5 cut(s) 108, 130, 223, 697, 727
BspACI CCGC 3 cut(s) 301, 381, 479
BspANI GGCC 1 cut(s) 380
BspDI ATCGAT 1 cut(s) 111
BspFNI CGCG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 245
BspQI GCTCTTC 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 243
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 383
BsrFI RCCGGY 1 cut(s) 448
BsrI ACTGG 1 cut(s) 787
BssAI RCCGGY 1 cut(s) 448
BssECI CCNNGG 2 cut(s) 308, 465
BssMI GATC 5 cut(s) 108, 130, 223, 697, 727
BssT1I CCWWGG 1 cut(s) 465
Bst6I CTCTTC 4 cut(s) 61, 194, 555, 792
BstAPI GCANNNNNTGC 1 cut(s) 494
BstC8I GCNNGC 2 cut(s) 242, 305
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 715
BstFNI CGCG 1 cut(s) 303
BstHHI GCGC 2 cut(s) 273, 370
BstKTI GATC 5 cut(s) 111, 133, 226, 700, 730
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 5 cut(s) 108, 130, 223, 697, 727
BstMWI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
BstUI CGCG 1 cut(s) 303
BstV1I GCAGC 6 cut(s) 225, 371, 469, 472, 481, 785
BstX2I RGATCY 1 cut(s) 697
BstXI CCANNNNNNTGG 1 cut(s) 810
BstYI RGATCY 1 cut(s) 697
Bsu15I ATCGAT 1 cut(s) 111
BsuRI GGCC 1 cut(s) 380
BsuTUI ATCGAT 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 715
BtsI GCAGTG 1 cut(s) 572
BtsIMutI CAGTG 2 cut(s) 219, 572
Cac8I GCNNGC 2 cut(s) 242, 305
CaiI CAGNNNCTG 1 cut(s) 782
CfoI GCGC 2 cut(s) 273, 370
Cfr10I RCCGGY 1 cut(s) 448
ClaI ATCGAT 1 cut(s) 111
Csp6I GTAC 3 cut(s) 263, 624, 636
CviAII CATG 4 cut(s) 98, 227, 706, 759
CviQI GTAC 3 cut(s) 263, 624, 636
DdeI CTNAG 1 cut(s) 6
DpnI GATC 5 cut(s) 110, 132, 225, 699, 729
DpnII GATC 5 cut(s) 108, 130, 223, 697, 727
DraIII CACNNNGTG 1 cut(s) 376
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 4 cut(s) 61, 194, 555, 792
EarI CTCTTC 4 cut(s) 61, 194, 555, 792
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 154
Eco88I CYCGRG 2 cut(s) 363, 384
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 4 cut(s) 101, 230, 709, 762
FaiI YATR 7 cut(s) 20, 99, 228, 340, 672, 707, 760
FaqI GGGAC 1 cut(s) 349
FatI CATG 4 cut(s) 97, 226, 705, 758
FbaI TGATCA 3 cut(s) 130, 223, 727
Fnu4HI GCNGC 8 cut(s) 214, 360, 381, 480, 483, 486, 495, 774
FokI GGATG 1 cut(s) 722
Fsp4HI GCNGC 8 cut(s) 214, 360, 381, 480, 483, 486, 495, 774
FspBI CTAG 3 cut(s) 615, 627, 794
GlaI GCGC 2 cut(s) 272, 369
GluI GCNGC 8 cut(s) 214, 360, 381, 480, 483, 486, 495, 774
GsaI CCCAGC 1 cut(s) 582
HaeIII GGCC 1 cut(s) 380
HapII CCGG 1 cut(s) 449
HhaI GCGC 2 cut(s) 273, 370
Hin1II CATG 4 cut(s) 101, 230, 709, 762
Hin6I GCGC 2 cut(s) 271, 368
HinP1I GCGC 2 cut(s) 271, 368
HinfI GANTC 2 cut(s) 101, 786
HpaII CCGG 1 cut(s) 449
HphI GGTGA 1 cut(s) 526
Hpy188I TCNGA 3 cut(s) 142, 295, 791
Hpy188III TCNNGA 2 cut(s) 321, 695
HpyAV CCTTC 1 cut(s) 701
HpyCH4V TGCA 2 cut(s) 488, 773
HpyF10VI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 101, 230, 709, 762
HspAI GCGC 2 cut(s) 271, 368
Ksp22I TGATCA 3 cut(s) 130, 223, 727
Kzo9I GATC 5 cut(s) 108, 130, 223, 697, 727
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 6 cut(s) 226, 435, 462, 592, 708, 768
Lsp1109I GCAGC 6 cut(s) 225, 371, 469, 472, 481, 785
LweI GCATC 2 cut(s) 19, 772
MaeI CTAG 3 cut(s) 615, 627, 794
MalI GATC 5 cut(s) 110, 132, 225, 699, 729
MbiI CCGCTC 1 cut(s) 383
MboI GATC 5 cut(s) 108, 130, 223, 697, 727
MflI RGATCY 1 cut(s) 697
MluCI AATT 6 cut(s) 136, 324, 415, 425, 680, 731
MseI TTAA 1 cut(s) 820
MslI CAYNNNNRTG 4 cut(s) 231, 757, 768, 808
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 273
MvnI CGCG 1 cut(s) 303
MwoI GCNNNNNNNGC 9 cut(s) 237, 279, 356, 365, 386, 485, 491, 494, 500
NdeII GATC 5 cut(s) 108, 130, 223, 697, 727
NlaIII CATG 4 cut(s) 101, 230, 709, 762
NlaIV GGNNCC 1 cut(s) 245
NmeAIII GCCGAG 1 cut(s) 333
PciSI GCTCTTC 1 cut(s) 792
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 101, 786
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 8 cut(s) 215, 361, 382, 481, 484, 487, 496, 775
PspFI CCCAGC 1 cut(s) 578
PspN4I GGNNCC 1 cut(s) 245
PsrI GAACNNNNNNTAC 2 cut(s) 628, 660
PstNI CAGNNNCTG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 697
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 350
RsaI GTAC 3 cut(s) 264, 625, 637
RsaNI GTAC 3 cut(s) 263, 624, 636
RseI CAYNNNNRTG 4 cut(s) 231, 757, 768, 808
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 1 cut(s) 820
SatI GCNGC 8 cut(s) 214, 360, 381, 480, 483, 486, 495, 774
Sau3AI GATC 5 cut(s) 108, 130, 223, 697, 727
ScaI AGTACT 1 cut(s) 625
SfaNI GCATC 2 cut(s) 19, 772
SmiMI CAYNNNNRTG 4 cut(s) 231, 757, 768, 808
SmlI CTYRAG 2 cut(s) 33, 151
SmoI CTYRAG 2 cut(s) 33, 151
SpeI ACTAGT 2 cut(s) 614, 626
Sse9I AATT 6 cut(s) 136, 324, 415, 425, 680, 731
SsiI CCGC 3 cut(s) 301, 381, 479
SspMI CTAG 3 cut(s) 615, 627, 794
StyI CCWWGG 1 cut(s) 465
TaqI TCGA 1 cut(s) 111
TasI AATT 6 cut(s) 136, 324, 415, 425, 680, 731
TatI WGTACW 2 cut(s) 623, 635
TauI GCSGC 2 cut(s) 383, 482
TfiI GAWTC 2 cut(s) 101, 786
Tru1I TTAA 1 cut(s) 820
Tru9I TTAA 1 cut(s) 820
TscAI CASTG 2 cut(s) 226, 579
TseI GCWGC 6 cut(s) 213, 359, 482, 485, 494, 773
TspDTI ATGAA 4 cut(s) 603, 639, 694, 738
TspRI CASTG 2 cut(s) 226, 579
Tth111I GACNNNGTC 1 cut(s) 146
XapI RAATTY 2 cut(s) 136, 324
XspI CTAG 3 cut(s) 615, 627, 794
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.