MD07G1099400.v1.1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0012492
Physical Location & Seq
Reverse (-)
10936721 .. 10937599
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1099400.v1.1.491

Sequence Viewer

Length: 879 bp
ATGTTTTTATGCACCACTCACATTTGTTACTCTGAAACTTTGGAGCTAGTTAGACCCCCTATCATGGCAAACCAAACCAACATAGAGAGTGATGCTCAAGAAAACCTCCTCCCCTCCACCTCCTCCACCACCACTACCACCTCCTCCTCCTCCTCCTCCACGATAATGAATTCCAATTCATTGGCGGATCATAAAAGCACAAAAGTTTCTCTATCAGAGAATTGTACATCAAAAAAAGGGCAAGAGCCAAACAATGAGAAAGAGCAAGGCAACAAAAAGAAGAGGCAGAGGACTACTAGTGATCACAGTAATGGCAAGCACCCGACTTTCTGTGGTGTACGAATGCGCAGTTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGAGGAAGAAATCAAGAATATGGTTAGGGACATACCAAACAGCTGAAATGGCAGCTAGAGCTCATGATGTGGCAGCTCTGGCCATCAAAGGTGCTTCTGCTTATCTCAATTTCCCTGAACTGGCCCAAGCACTTCCCCAGCCAGACTCCAAGTCTCCAAAGGACATCCAAGCTGCAGCTGCCAAGGCAGCATCAGAAGCAGCAGCTGCTTCTGCTTCTGAGGAAAAGCAGCTTATTTGTGAAGCAGAAACTAACGAAGCAGAGGTCAAGCTGCCCATGTCAGCAAATTCAACTTTGTCCAATGCTCAAGAATCAAGTAGCACTTGTGCTTCTGCTTCAACAAATTATGATGAGGAGCAATTGTTTGACCTACCAGATCTTGTCATAGATGGGAAAGATGGAAGCGATAATTTTCGCTATTATTCTTCCTCAACTTGGCATTTGTGTGCAGCTGACACTGGATTCAGGCTAGAGGAGCCATTCTTGTGGGAGTATTAG

Protein Analysis

293

Amino Acids

31.98

Weight (kDa)

5.38

Isoelectric Point (pI)

48.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 112 - 158 8.8e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44940
fragaria_vesca FvH4_7g09550
malus_domestica MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica Prupe.2G123200_v2.0.a1
pyrus_communis pycom07g08150 pycom1310g00030
rosa_chinensis RchiOBHm_Chr1g0346421
rosa_laevigata RLG00000007751 RLG00000028801
rosa_multiflora Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii Rroxscaffold_4G00308600
rosa_rugosa Rorug01G0179600
rosa_samantha Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana Rw1G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 347
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 185, 376
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 1 cut(s) 462
AcsI RAATTY 2 cut(s) 169, 667
AfaI GTAC 2 cut(s) 226, 339
AfiI CCNNNNNNNGG 3 cut(s) 64, 502, 816
AgsI TTSAA 2 cut(s) 672, 720
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 334, 366
Alw21I GWGCWC 1 cut(s) 445
Alw26I GTCTC 1 cut(s) 540
AlwI GGATC 1 cut(s) 195
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 462, 504
ApoI RAATTY 2 cut(s) 169, 667
ArsI GACNNNNNNTTYG 2 cut(s) 630, 662
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 505
BalI TGGCCA 1 cut(s) 464
BanII GRGCYC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 445
BccI CCATC 3 cut(s) 473, 764, 773
BclI TGATCA 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 540
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 4 cut(s) 47, 297, 438, 851
BfmI CTRYAG 1 cut(s) 555
BglII AGATCT 1 cut(s) 757
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgT120I GGNCC 1 cut(s) 505
BmiI GGNNCC 1 cut(s) 858
BmsI GCATC 2 cut(s) 82, 581
BplI GAGNNNNNCTC 2 cut(s) 79, 111
BpuEI CTTGAG 2 cut(s) 81, 672
BsaJI CCNNGG 2 cut(s) 383, 564
BsaXI ACNNNNNCTCC 2 cut(s) 728, 758
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 502, 816
Bse1I ACTGG 2 cut(s) 507, 844
BseDI CCNNGG 2 cut(s) 383, 564
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 64, 502, 816
BseMII CTCAG 1 cut(s) 591
BseNI ACTGG 2 cut(s) 507, 844
BseRI GAGGAG 9 cut(s) 98, 112, 133, 136, 139, 142, 145, 749, 869
BseYI CCCAGC 1 cut(s) 519
BsgI GTGCAG 1 cut(s) 849
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 464, 506
BsiHKAI GWGCWC 1 cut(s) 445
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 3 cut(s) 64, 502, 816
BsmAI GTCTC 1 cut(s) 540
BsmFI GGGAC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 2 cut(s) 464, 506
Bsp1286I GDGCHC 1 cut(s) 445
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 187, 301, 757
BspACI CCGC 2 cut(s) 185, 376
BspANI GGCC 2 cut(s) 464, 506
BspCNI CTCAG 1 cut(s) 592
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 858
BspMAI CTGCAG 1 cut(s) 559
BspPI GGATC 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 2 cut(s) 507, 844
BssECI CCNNGG 2 cut(s) 383, 564
BssMI GATC 3 cut(s) 187, 301, 757
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 308
Bst6I CTCTTC 1 cut(s) 275
BstAPI GCANNNNNTGC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 224
BstC8I GCNNGC 2 cut(s) 317, 380
BstDEI CTNAG 1 cut(s) 600
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 3 cut(s) 190, 304, 760
BstMAI GTCTC 1 cut(s) 540
BstMBI GATC 3 cut(s) 187, 301, 757
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 2 cut(s) 181, 867
BstYI RGATCY 1 cut(s) 757
BsuRI GGCC 2 cut(s) 464, 506
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 837
Cac8I GCNNGC 2 cut(s) 317, 380
CaiI CAGNNNCTG 1 cut(s) 587
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 505
Csp6I GTAC 2 cut(s) 225, 338
CviAII CATG 3 cut(s) 64, 446, 658
CviQI GTAC 2 cut(s) 225, 338
DdeI CTNAG 1 cut(s) 600
DpnI GATC 3 cut(s) 189, 303, 759
DpnII GATC 3 cut(s) 187, 301, 757
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 200
Ecl136II GAGCTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 445
Eco53kI GAGCTC 1 cut(s) 443
EcoICRI GAGCTC 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 564
FaeI CATG 3 cut(s) 67, 449, 661
FalI AAGNNNNNCTT 2 cut(s) 688, 720
FaqI GGGAC 1 cut(s) 424
FatI CATG 3 cut(s) 63, 445, 657
FbaI TGATCA 1 cut(s) 301
FokI GGATG 1 cut(s) 533
FriOI GRGCYC 1 cut(s) 445
FspBI CTAG 4 cut(s) 47, 297, 438, 851
FspI TGCGCA 1 cut(s) 347
GlaI GCGC 1 cut(s) 347
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 2 cut(s) 464, 506
HhaI GCGC 1 cut(s) 348
Hin1II CATG 3 cut(s) 67, 449, 661
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 3 cut(s) 527, 692, 843
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 5 cut(s) 34, 217, 370, 577, 601
Hpy188III TCNNGA 4 cut(s) 98, 396, 446, 689
Hpy8I GTNNAC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 3 cut(s) 12, 557, 830
HpyF3I CTNAG 1 cut(s) 600
Hsp92II CATG 3 cut(s) 67, 449, 661
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 301
Kzo9I GATC 3 cut(s) 187, 301, 757
LmnI GCTCC 3 cut(s) 43, 736, 856
LpnPI CCDG 8 cut(s) 446, 488, 510, 533, 537, 768, 825, 832
LweI GCATC 2 cut(s) 82, 581
MaeI CTAG 4 cut(s) 47, 297, 438, 851
MaeIII GTNAC 1 cut(s) 26
MalI GATC 3 cut(s) 189, 303, 759
MboI GATC 3 cut(s) 187, 301, 757
MboII GAAGA 3 cut(s) 292, 400, 798
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 1 cut(s) 445
MlsI TGGCCA 1 cut(s) 464
MluCI AATT 8 cut(s) 169, 175, 220, 490, 667, 724, 740, 790
MluNI TGGCCA 1 cut(s) 464
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 348
Mox20I TGGCCA 1 cut(s) 464
MscI TGGCCA 1 cut(s) 464
MslI CAYNNNNRTG 4 cut(s) 164, 309, 825, 865
Msp20I TGGCCA 1 cut(s) 464
MspA1I CMGCKG 4 cut(s) 425, 560, 587, 833
MunI CAATTG 1 cut(s) 740
Mva1269I GAATGC 1 cut(s) 348
MvnI CGCG 1 cut(s) 378
NdeII GATC 3 cut(s) 187, 301, 757
NlaIII CATG 3 cut(s) 67, 449, 661
NlaIV GGNNCC 1 cut(s) 858
NmeAIII GCCGAG 1 cut(s) 408
NsbI TGCGCA 1 cut(s) 347
PagI TCATGA 1 cut(s) 445
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 692, 843
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 445
PspFI CCCAGC 1 cut(s) 519
PspN4I GGNNCC 1 cut(s) 858
PspPI GGNCC 1 cut(s) 505
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 757
PvuII CAGCTG 4 cut(s) 425, 560, 587, 833
RsaI GTAC 2 cut(s) 226, 339
RsaNI GTAC 2 cut(s) 225, 338
RseI CAYNNNNRTG 4 cut(s) 164, 309, 825, 865
SacI GAGCTC 1 cut(s) 445
Sau3AI GATC 3 cut(s) 187, 301, 757
Sau96I GGNCC 1 cut(s) 505
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 1 cut(s) 445
SfaNI GCATC 2 cut(s) 82, 581
SfcI CTRYAG 1 cut(s) 555
SmiMI CAYNNNNRTG 4 cut(s) 164, 309, 825, 865
SmlI CTYRAG 2 cut(s) 96, 687
SmoI CTYRAG 2 cut(s) 96, 687
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 8 cut(s) 169, 175, 220, 490, 667, 724, 740, 790
SsiI CCGC 2 cut(s) 185, 376
SspMI CTAG 4 cut(s) 47, 297, 438, 851
SstI GAGCTC 1 cut(s) 445
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 308
TasI AATT 8 cut(s) 169, 175, 220, 490, 667, 724, 740, 790
TatI WGTACW 1 cut(s) 224
TfiI GAWTC 2 cut(s) 692, 843
TscAI CASTG 1 cut(s) 844
TspDTI ATGAA 2 cut(s) 168, 182
TspRI CASTG 1 cut(s) 844
XapI RAATTY 2 cut(s) 169, 667
XspI CTAG 4 cut(s) 47, 297, 438, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.