Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0012492

Physical Location & Seq

Genomic Coordinates Reverse (-)

17970811 .. 17971641

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G123200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTAAGCAAATCAACATAGAGAGTGATGCTCAAGAAAATCTCCTTACCTCATCTTCCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCTCAACAACAACTTCTGATTCTTTGGCTGATAAAAACACTCAAAACTCAGAGAATTGTACATCTCAAAAAGGCTCATCAATAAAAGGGCAAGAAGAACCAAACAATGAGAATGAGCAAGACAACAGCAAGAAGAAGAAGAGGCAGAGAAGCAGTGATCAGAGTGATGGCAAGCACCCGACATACCGCGGCGTAAGAATGCGTAGCTGGGGAAAATGGGTGTCCGAAATCCGAGAGCCAAGGAAGAAATCAAGAATATGGTTAGGGACATACCCAACAGCTGAAATGGCAGCTAGAGCTCATGATGTGGCAGCTCTAGCCATCAAAGGTGCTTCTGCTTTTCTCAATTTCCCTGAATTGGCTCAAACACTTCCCCAGCCAGACTCCAAGTCTCCAAAAGACATTCAAGCTGCTGCTGCTAAGGCTGCTAAGGCTGCAGCTGATGCTTCTGAGGAAAAGCAGATTATTTGTGAAACAGAGGCTGAAGAAGCAGAGCCCAGCAGCAAAGTCAAGCTTCCCATGTCCTCAAATTCAACTTTGTCCATGGACAACATTAATGCTCAAGAATCAACTAGTACTTGTGCTTCAACTGATTATGATGATGACAAATTGTTTGACCTTCCAGATCTTTTCATGGATGGCACAAATGGAAGTGATCAGTTTTGCTATTCTTCTTCAACATGGCATTTGTGTGCAGCTGACACTGGATTCAGGCTAGGGGATCCCTTCTTGTGGGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

277

Amino Acids

30.1

Weight (kDa)

4.94

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012492)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44940
fragaria_vesca	FvH4_7g09550
malus_domestica	MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica	Prupe.2G123200_v2.0.a1
pyrus_communis	pycom07g08150 pycom1310g00030
rosa_chinensis	RchiOBHm_Chr1g0346421
rosa_laevigata	RLG00000007751 RLG00000028801
rosa_multiflora	Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii	Rroxscaffold_4G00308600
rosa_rugosa	Rorug01G0179600
rosa_samantha	Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana	Rw1G016700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	276
AciI	CCGC	2 cut(s)	274, 276
AclWI	GGATC	2 cut(s)	803, 816
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	148, 664
AfiI	CCNNNNNNNGG	2 cut(s)	445, 819
AgsI	TTSAA	4 cut(s)	494, 621, 675, 765
AhdI	GACNNNNNGTC	1 cut(s)	475
AhlI	ACTAGT	1 cut(s)	659
AluBI	AGCT	9 cut(s)	294, 368, 380, 386, 401, 497, 527, 601, 785
AluI	AGCT	9 cut(s)	294, 368, 380, 386, 401, 497, 527, 601, 785
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	483
AlwI	GGATC	2 cut(s)	803, 816
AlwNI	CAGNNNCTG	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	616
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AseI	ATTAAT	1 cut(s)	642
BamHI	GGATCC	1 cut(s)	808
BanII	GRGCYC	2 cut(s)	388, 585
BarI	GAAGNNNNNNTAC	2 cut(s)	655, 687
Bbv12I	GWGCWC	1 cut(s)	388
BccI	CCATC	3 cut(s)	248, 416, 719
BclI	TGATCA	2 cut(s)	244, 742
BcoDI	GTCTC	1 cut(s)	483
BcuI	ACTAGT	1 cut(s)	659
BfaI	CTAG	4 cut(s)	381, 404, 660, 803
BfmI	CTRYAG	1 cut(s)	522
BglII	AGATCT	1 cut(s)	712
BlpI	GCTNAGC	1 cut(s)	6
BmcAI	AGTACT	1 cut(s)	664
BmeRI	GACNNNNNGTC	1 cut(s)	475
BmiI	GGNNCC	1 cut(s)	810
BmsI	GCATC	2 cut(s)	19, 520
BplI	GAGNNNNNCTC	2 cut(s)	16, 48
Bpu10I	CCTNAGC	2 cut(s)	507, 516
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	2 cut(s)	18, 633
BsaJI	CCNNGG	3 cut(s)	274, 326, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 819
Bse1I	ACTGG	1 cut(s)	796
BseDI	CCNNGG	3 cut(s)	274, 326, 630
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	2 cut(s)	445, 819
BseMII	CTCAG	2 cut(s)	150, 528
BseNI	ACTGG	1 cut(s)	796
BseRI	GAGGAG	8 cut(s)	52, 55, 58, 61, 64, 67, 70, 79
BseYI	CCCAGC	3 cut(s)	294, 462, 584
BsgI	GTGCAG	1 cut(s)	801
Bsh1236I	CGCG	1 cut(s)	276
BsiHKAI	GWGCWC	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	445, 819
BsmAI	GTCTC	1 cut(s)	483
BsmFI	GGGAC	1 cut(s)	367
BsmI	GAATGC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	388, 585
Bsp1407I	TGTACA	1 cut(s)	146
Bsp143I	GATC	4 cut(s)	244, 712, 742, 808
Bsp1720I	GCTNAGC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	630
BspACI	CCGC	2 cut(s)	274, 276
BspCNI	CTCAG	2 cut(s)	149, 529
BspFNI	CGCG	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	388
BspLI	GGNNCC	1 cut(s)	810
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	2 cut(s)	803, 816
BsrGI	TGTACA	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	796
BssECI	CCNNGG	3 cut(s)	274, 326, 630
BssMI	GATC	4 cut(s)	244, 712, 742, 808
BssT1I	CCWWGG	2 cut(s)	326, 630
Bst6I	CTCTTC	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	260
BstDEI	CTNAG	5 cut(s)	6, 136, 507, 516, 537
BstDSI	CCRYGG	2 cut(s)	274, 630
BstF5I	GGATG	1 cut(s)	730
BstFNI	CGCG	1 cut(s)	276
BstKTI	GATC	4 cut(s)	247, 715, 745, 811
BstMAI	GTCTC	1 cut(s)	483
BstMBI	GATC	4 cut(s)	244, 712, 742, 808
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	276
BstX2I	RGATCY	2 cut(s)	712, 808
BstYI	RGATCY	2 cut(s)	712, 808
BtgI	CCRYGG	2 cut(s)	274, 630
BtsCI	GGATG	1 cut(s)	730
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 789
Cac8I	GCNNGC	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	569
CciI	TCATGA	1 cut(s)	388
Cfr42I	CCGCGG	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	147, 663
CviAII	CATG	5 cut(s)	389, 607, 631, 721, 768
CviQI	GTAC	2 cut(s)	147, 663
DdeI	CTNAG	5 cut(s)	6, 136, 507, 516, 537
DpnI	GATC	4 cut(s)	246, 714, 744, 810
DpnII	GATC	4 cut(s)	244, 712, 742, 808
DriI	GACNNNNNGTC	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	221
Eam1105I	GACNNNNNGTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	326, 630
Eco24I	GRGCYC	2 cut(s)	388, 585
Eco53kI	GAGCTC	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	591
EcoICRI	GAGCTC	1 cut(s)	386
EcoT14I	CCWWGG	2 cut(s)	326, 630
EcoT38I	GRGCYC	2 cut(s)	388, 585
ErhI	CCWWGG	2 cut(s)	326, 630
FaeI	CATG	5 cut(s)	392, 610, 634, 724, 771
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	5 cut(s)	388, 606, 630, 720, 767
FbaI	TGATCA	2 cut(s)	244, 742
FokI	GGATG	1 cut(s)	737
FriOI	GRGCYC	2 cut(s)	388, 585
FspBI	CTAG	4 cut(s)	381, 404, 660, 803
GsaI	CCCAGC	3 cut(s)	298, 466, 588
Hin1II	CATG	5 cut(s)	392, 610, 634, 724, 771
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	4 cut(s)	107, 470, 653, 795
Hpy188I	TCNGA	6 cut(s)	106, 139, 249, 313, 320, 538
Hpy188III	TCNNGA	5 cut(s)	35, 339, 389, 650, 710
HpyAV	CCTTC	2 cut(s)	716, 823
HpyCH4V	TGCA	2 cut(s)	524, 782
HpyF3I	CTNAG	5 cut(s)	6, 136, 507, 516, 537
Hsp92II	CATG	5 cut(s)	392, 610, 634, 724, 771
Ksp22I	TGATCA	2 cut(s)	244, 742
KspI	CCGCGG	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	244, 712, 742, 808
LpnPI	CCDG	8 cut(s)	280, 453, 476, 480, 598, 723, 777, 784
LweI	GCATC	2 cut(s)	19, 520
MaeI	CTAG	4 cut(s)	381, 404, 660, 803
MalI	GATC	4 cut(s)	246, 714, 744, 810
MboI	GATC	4 cut(s)	244, 712, 742, 808
MboII	GAAGA	9 cut(s)	48, 194, 232, 235, 238, 343, 584, 750, 753
MflI	RGATCY	2 cut(s)	712, 808
MhlI	GDGCHC	2 cut(s)	388, 585
MluCI	AATT	5 cut(s)	142, 433, 443, 616, 695
MlyI	GAGTC	1 cut(s)	464
MseI	TTAA	1 cut(s)	642
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	4 cut(s)	276, 368, 527, 785
Mva1269I	GAATGC	1 cut(s)	291
MvnI	CGCG	1 cut(s)	276
NcoI	CCATGG	1 cut(s)	630
NdeII	GATC	4 cut(s)	244, 712, 742, 808
NlaIII	CATG	5 cut(s)	392, 610, 634, 724, 771
NlaIV	GGNNCC	1 cut(s)	810
PagI	TCATGA	1 cut(s)	388
PctI	GAATGC	1 cut(s)	291
PfeI	GAWTC	3 cut(s)	107, 653, 795
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PshBI	ATTAAT	1 cut(s)	642
Psp124BI	GAGCTC	1 cut(s)	388
PspFI	CCCAGC	3 cut(s)	294, 462, 584
PspN4I	GGNNCC	1 cut(s)	810
PstI	CTGCAG	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	2 cut(s)	712, 808
PvuII	CAGCTG	3 cut(s)	368, 527, 785
RsaI	GTAC	2 cut(s)	148, 664
RsaNI	GTAC	2 cut(s)	147, 663
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	388
SacII	CCGCGG	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	642
Sau3AI	GATC	4 cut(s)	244, 712, 742, 808
ScaI	AGTACT	1 cut(s)	664
SchI	GAGTC	1 cut(s)	464
SduI	GDGCHC	2 cut(s)	388, 585
SfaNI	GCATC	2 cut(s)	19, 520
SfcI	CTRYAG	1 cut(s)	522
Sfr303I	CCGCGG	1 cut(s)	277
SgrBI	CCGCGG	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	33, 648
SmoI	CTYRAG	2 cut(s)	33, 648
SpeI	ACTAGT	1 cut(s)	659
Sse9I	AATT	5 cut(s)	142, 433, 443, 616, 695
SsiI	CCGC	2 cut(s)	274, 276
SspMI	CTAG	4 cut(s)	381, 404, 660, 803
SstI	GAGCTC	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	326, 630
TasI	AATT	5 cut(s)	142, 433, 443, 616, 695
TatI	WGTACW	2 cut(s)	146, 662
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	107, 653, 795
Tru1I	TTAA	1 cut(s)	642
Tru9I	TTAA	1 cut(s)	642
TscAI	CASTG	2 cut(s)	247, 796
TspDTI	ATGAA	1 cut(s)	709
TspRI	CASTG	2 cut(s)	247, 796
VspI	ATTAAT	1 cut(s)	642
XapI	RAATTY	1 cut(s)	616
XspI	CTAG	4 cut(s)	381, 404, 660, 803
ZrmI	AGTACT	1 cut(s)	664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.