pycom1310g00030

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001310
OG0012492
Physical Location & Seq
Forward (+)
41243 .. 42046
804 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1310g00030.1

Sequence Viewer

Length: 804 bp
ATGGCAAACCAAATCAACATAGAGAGTGATGCTCAAGAAAACCTTCTCCACTCCTTCACCTCCACCTCCTCCTCCACCTCTTCCTCCTCCACGATAACGACAAATTTCAATTCATTGGCAGATCATAAAACCACACAAGTTTCTCTAAATTTAGATAATTGTACATCAAAAAAAGGGCAAAAGCCAAACAATGAGAAAGAGCAAGGCAACAAGAAGAAGAGGCAGAGGACCGCTAGTGATCACAGTGATGGCAAGCAACCGACGTACTGCGGCGTAAGAATGCGCAGTTGGGGAAAATGGGTGTCGGAAATCCGCGAGCCGAGGAAGAAATCGAGAATATGGTTAGGGACATACCCAACTGCTGAAATGGCAGCCAGGGCTCATGATGTGGCAGCTCTAGCCATCAAAGGTGCTTCTGCTTACCTTAATTTCCCTGAATTGGCTCAAGCACTTCCCCAGCCAGACTCCAAGTCTCCAAAGGACATCCAAGCTGCTGCTGCCAAGGCAGCTGCTGCTTCTGCTTCTGAGGAAAAGCAGCTTATATGTGAAGCAGAAACTAAAGAAGCAGAGCCCAAGCTCCCTATATCAACAAATTCAACATTGTCCAATGCTCAAGAATCAAGTAGCACTTGTGCTTCTGGTTCAACAGATTACGATGATGAGAAATTGTTTGACCTACCAGATCTTTTCATGGATGGAAAAGAGGGAAGTGATATTTTTTGCAATTATTCTTCTTCAACTTGGCATTTGTGTGCAGCTGACACTGGATTCAGGCTAGGGGACCCATTCTTATGGGAGTATTAG

Protein Analysis

268

Amino Acids

29.18

Weight (kDa)

5.63

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 89 - 137 1.4e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012492)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44940
fragaria_vesca FvH4_7g09550
malus_domestica MD02G1217900.v1.1 MD07G1099400.v1.1
prunus_persica Prupe.2G123200_v2.0.a1
pyrus_communis pycom07g08150 pycom1310g00030
rosa_chinensis RchiOBHm_Chr1g0346421
rosa_laevigata RLG00000007751 RLG00000028801
rosa_multiflora Rmu_sc0003363.1_g000069 Rmu_sc0022454.1_g000001
rosa_roxburghii Rroxscaffold_4G00308600
rosa_rugosa Rorug01G0179600
rosa_samantha Rh1AG199100 Rh1BG164800 Rh1CG184100 Rh1DG195600
rosa_wichuraiana Rw1G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 284
AccII CGCG 1 cut(s) 315
AciI CCGC 3 cut(s) 231, 270, 313
AcsI RAATTY 3 cut(s) 103, 148, 592
AfaI GTAC 2 cut(s) 163, 266
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 4 cut(s) 109, 597, 645, 738
AhdI GACNNNNNGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 271, 303
AluBI AGCT 6 cut(s) 395, 491, 509, 538, 577, 758
AluI AGCT 6 cut(s) 395, 491, 509, 538, 577, 758
Alw26I GTCTC 1 cut(s) 477
AlwNI CAGNNNCTG 1 cut(s) 512
ApoI RAATTY 3 cut(s) 103, 148, 592
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 228, 781
AsuHPI GGTGA 1 cut(s) 49
AvaII GGWCC 2 cut(s) 228, 781
BanII GRGCYC 2 cut(s) 382, 573
BccI CCATC 3 cut(s) 242, 410, 689
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 477
BfaI CTAG 3 cut(s) 234, 398, 776
BglII AGATCT 1 cut(s) 682
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 2 cut(s) 228, 781
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 228, 781
BmiI GGNNCC 2 cut(s) 782, 783
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 1 cut(s) 19
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpuEI CTTGAG 3 cut(s) 18, 429, 597
BsaJI CCNNGG 3 cut(s) 320, 375, 501
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 1 cut(s) 769
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 320, 375, 501
BseGI GGATG 2 cut(s) 483, 700
BseLI CCNNNNNNNGG 1 cut(s) 439
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 769
BseRI GAGGAG 3 cut(s) 58, 61, 76
BseYI CCCAGC 1 cut(s) 456
BsgI GTGCAG 1 cut(s) 774
Bsh1236I CGCG 1 cut(s) 315
BslFI GGGAC 2 cut(s) 361, 794
BslI CCNNNNNNNGG 1 cut(s) 439
BsmAI GTCTC 1 cut(s) 477
BsmFI GGGAC 2 cut(s) 361, 794
BsmI GAATGC 1 cut(s) 285
Bsp1286I GDGCHC 2 cut(s) 382, 573
Bsp1407I TGTACA 1 cut(s) 161
Bsp143I GATC 3 cut(s) 121, 238, 682
BspACI CCGC 3 cut(s) 231, 270, 313
BspCNI CTCAG 1 cut(s) 517
BspFNI CGCG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 782, 783
BsrGI TGTACA 1 cut(s) 161
BsrI ACTGG 1 cut(s) 769
BssECI CCNNGG 3 cut(s) 320, 375, 501
BssMI GATC 3 cut(s) 121, 238, 682
BssT1I CCWWGG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 2 cut(s) 85, 212
BstAPI GCANNNNNTGC 1 cut(s) 512
BstAUI TGTACA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 254, 317
BstDEI CTNAG 1 cut(s) 525
BstF5I GGATG 2 cut(s) 483, 700
BstFNI CGCG 1 cut(s) 315
BstHHI GCGC 1 cut(s) 285
BstKTI GATC 3 cut(s) 124, 241, 685
BstMAI GTCTC 1 cut(s) 477
BstMBI GATC 3 cut(s) 121, 238, 682
BstMWI GCNNNNNNNGC 8 cut(s) 368, 377, 398, 497, 503, 506, 512, 518
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstUI CGCG 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 682
BstXI CCANNNNNNTGG 1 cut(s) 792
BstYI RGATCY 1 cut(s) 682
BtsCI GGATG 2 cut(s) 483, 700
BtsIMutI CAGTG 2 cut(s) 250, 762
Cac8I GCNNGC 2 cut(s) 254, 317
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 382
CfoI GCGC 1 cut(s) 285
Cfr13I GGNCC 2 cut(s) 228, 781
Csp6I GTAC 2 cut(s) 162, 265
CviAII CATG 2 cut(s) 383, 691
CviQI GTAC 2 cut(s) 162, 265
DdeI CTNAG 1 cut(s) 525
DpnI GATC 3 cut(s) 123, 240, 684
DpnII GATC 3 cut(s) 121, 238, 682
DriI GACNNNNNGTC 1 cut(s) 469
Eam1104I CTCTTC 2 cut(s) 85, 212
Eam1105I GACNNNNNGTC 1 cut(s) 469
EarI CTCTTC 2 cut(s) 85, 212
Eco130I CCWWGG 1 cut(s) 501
Eco24I GRGCYC 2 cut(s) 382, 573
Eco47I GGWCC 2 cut(s) 228, 781
EcoO109I RGGNCCY 1 cut(s) 781
EcoRII CCWGG 1 cut(s) 374
EcoT14I CCWWGG 1 cut(s) 501
EcoT38I GRGCYC 2 cut(s) 382, 573
ErhI CCWWGG 1 cut(s) 501
FaeI CATG 2 cut(s) 386, 694
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 613, 645
FaqI GGGAC 2 cut(s) 361, 794
FatI CATG 2 cut(s) 382, 690
FbaI TGATCA 1 cut(s) 238
FokI GGATG 2 cut(s) 470, 707
FriOI GRGCYC 2 cut(s) 382, 573
FspBI CTAG 3 cut(s) 234, 398, 776
FspI TGCGCA 1 cut(s) 284
GlaI GCGC 1 cut(s) 284
GsaI CCCAGC 1 cut(s) 460
HhaI GCGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 386, 694
Hin6I GCGC 1 cut(s) 283
HinP1I GCGC 1 cut(s) 283
HinfI GANTC 3 cut(s) 464, 617, 768
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 2 cut(s) 307, 526
Hpy188III TCNNGA 4 cut(s) 35, 333, 383, 614
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 53, 64
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 723, 755
HpyF10VI GCNNNNNNNGC 8 cut(s) 368, 377, 398, 497, 503, 506, 512, 518
HpyF3I CTNAG 1 cut(s) 525
HpySE526I ACGT 1 cut(s) 263
Hsp92II CATG 2 cut(s) 386, 694
HspAI GCGC 1 cut(s) 283
KflI GGGWCCC 1 cut(s) 781
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 121, 238, 682
LmnI GCTCC 1 cut(s) 582
LpnPI CCDG 9 cut(s) 361, 388, 447, 470, 474, 624, 693, 750, 757
LweI GCATC 1 cut(s) 19
MaeI CTAG 3 cut(s) 234, 398, 776
MaeII ACGT 1 cut(s) 263
MalI GATC 3 cut(s) 123, 240, 684
MboI GATC 3 cut(s) 121, 238, 682
MboII GAAGA 6 cut(s) 72, 226, 229, 337, 723, 726
MflI RGATCY 1 cut(s) 682
MhlI GDGCHC 2 cut(s) 382, 573
MluCI AATT 9 cut(s) 103, 109, 148, 157, 427, 437, 592, 665, 724
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 3 cut(s) 246, 750, 790
MspA1I CMGCKG 2 cut(s) 509, 758
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 8 cut(s) 368, 377, 398, 497, 503, 506, 512, 518
NdeII GATC 3 cut(s) 121, 238, 682
NlaIII CATG 2 cut(s) 386, 694
NlaIV GGNNCC 2 cut(s) 782, 783
NmeAIII GCCGAG 1 cut(s) 345
NsbI TGCGCA 1 cut(s) 284
PagI TCATGA 1 cut(s) 382
PctI GAATGC 1 cut(s) 285
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 2 cut(s) 617, 768
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
PpuMI RGGWCCY 1 cut(s) 781
Psp5II RGGWCCY 1 cut(s) 781
Psp6I CCWGG 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 456
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 782, 783
PspPI GGNCC 2 cut(s) 228, 781
PspPPI RGGWCCY 1 cut(s) 781
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 2 cut(s) 509, 758
RsaI GTAC 2 cut(s) 163, 266
RsaNI GTAC 2 cut(s) 162, 265
RseI CAYNNNNRTG 3 cut(s) 246, 750, 790
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 3 cut(s) 121, 238, 682
Sau96I GGNCC 2 cut(s) 228, 781
SchI GAGTC 1 cut(s) 458
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 2 cut(s) 382, 573
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 2 cut(s) 228, 781
SmiMI CAYNNNNRTG 3 cut(s) 246, 750, 790
SmlI CTYRAG 3 cut(s) 33, 444, 612
SmoI CTYRAG 3 cut(s) 33, 444, 612
Sse9I AATT 9 cut(s) 103, 109, 148, 157, 427, 437, 592, 665, 724
SsiI CCGC 3 cut(s) 231, 270, 313
SspMI CTAG 3 cut(s) 234, 398, 776
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 501
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 266
TaqI TCGA 1 cut(s) 332
TasI AATT 9 cut(s) 103, 109, 148, 157, 427, 437, 592, 665, 724
TatI WGTACW 1 cut(s) 161
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 2 cut(s) 617, 768
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 2 cut(s) 250, 769
TspDTI ATGAA 2 cut(s) 102, 679
TspRI CASTG 2 cut(s) 250, 769
VpaK11BI GGWCC 2 cut(s) 228, 781
XapI RAATTY 3 cut(s) 103, 148, 592
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 234, 398, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.