AT2G45380

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0005437
Physical Location & Seq
Reverse (-)
18699428 .. 18703093
3666 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45380.1

Sequence Viewer

Length: 1485 bp
ATGTCTTTGGATAAAGTTTTGGAAGACGAGGTTGTTGAAGATACAGGGGAATCACAAGTCTTTAACTTGCTTAATCCAGAATTTGTAGACTTTGATACTTGTTTAGATCCTATCACAAACGAACTTCCAACTTCCGCCAATCAGAAGGCTCTATTTCGTACCCACTCGCAGAAAGAGCGCGTTGAGCGAGTGAGAGCGATTCTAAGTGGAAGATCAATAGAAAATAATAGAAGAACAGAGACGACGAAACCTGCCGGGGAACTGAGGAGAGAAAAAACCCCGGCGAAAAAGGGAAATTCGAATTCGTCTTCTGTTGATCATCGCTTCACTTCTGCTTCCAGAGCTTTTACTCAGAAGAAGCTCGATGATCTCAAATCTCTCTTTGTTTCCCTCGCTTCCAAGTCTCACAGCAATGACCAATACGTCTCGTACCCTGTTTTCCAGGAGTATTTTGGTCTGAGTGGTTCTTTAGGAGAAAGGATCTTTGATATGGTTACTCAACACAGGAAAGATGATAAAATGACTTTTGAAGATCTTGTTATTGCTAAAATGACTTTTGAAGATCTTGTTATTGCTAAGAGTACTCTGCCTCTGGAATTTCTGGGTTCTTCTCGGATTCTCTCAAAGATTGCAGAGGTAAAAAGAGGAATTAGGAAAATGGGTGATCCATTTGGTGGTAGATTTGGAGGATTTAGAGGTAGCTTGTTTGGAGGAAGAGATCCTTTTGATGATCCTTTCTTCTCTCGACCATTTGAGGATTTGCTCGAACCATCCAACACCTTTAGTTCAGGTGCTTCCTTTAGTAATGCACATAAGAACAATGGTGGAAGAGGTTTAACAATTGAAGAATTACCGTCTGATGAAGAAGTTGAAGAAAGGAAAGATATTGGTATTGATGATCAAGAACATGCTAGTTCAGTGAATAAACCATCTGTTGAGCACCCTGAAGATGATTCTGATGCTGAGAGGAAGATTCAGAATGTGAATCAAAGGAGTGATTTTAACCGAAGAGAGGGTACACAGTCTCGAGCTAACACATTCAGACATCACATCTCTAAGGTTACATATGGTGGCATACATGGTGCGTACTATACATCTACTAGAACCAGAAGAAAAGACGGTGATGGAATGGTGGTTGAGGAAAGCAAAGAAGCTGATAAGACTACCGGTGAAGCCACTCATAGGATCTCAAGAGGAATCAATGATAAGGGTCATTCAGTTACTAGGAAGCTCAACTCAAGTGGTGGTGTAGAGTCGACACAGACTCTTCACAACCTCGATGAAGATGAATTAAGTGGCTTTGAAGAAGCATGGAAAGGCAATTCATCTCTTGGCAAGCATGAATTCACTGGCTCTGATAATAGTTTTGGAGGGTGGGTACTTCCATCTCTTGACCAAATTCGTCGCCAAACAGACCAAAGTCAGACTGGTTCGAGCCGATCTGCAACTGGAGCTAAGAAGGTTGTTCGAATCAACATTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

494

Amino Acids

55.15

Weight (kDa)

5.95

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 299 - 440 2.4e-18 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 259
AccB7I CCANNNNNTGG 1 cut(s) 674
AccI GTMKAC 2 cut(s) 87, 1256
AccII CGCG 1 cut(s) 180
AciI CCGC 1 cut(s) 135
AclWI GGATC 6 cut(s) 101, 488, 659, 713, 725, 1193
AcsI RAATTY 6 cut(s) 80, 295, 301, 596, 1343, 1398
AcuI CTGAAG 1 cut(s) 966
AfaI GTAC 6 cut(s) 160, 431, 583, 1018, 1088, 1380
AfiI CCNNNNNNNGG 3 cut(s) 674, 1012, 1182
AgeI ACCGGT 1 cut(s) 1166
AgsI TTSAA 7 cut(s) 38, 530, 560, 845, 872, 1304, 1481
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 7 cut(s) 344, 361, 702, 1031, 1154, 1231, 1454
AluI AGCT 7 cut(s) 344, 361, 702, 1031, 1154, 1231, 1454
Alw21I GWGCWC 1 cut(s) 942
Alw26I GTCTC 4 cut(s) 233, 408, 430, 1029
AlwI GGATC 6 cut(s) 101, 488, 659, 713, 725, 1193
Ama87I CYCGRG 1 cut(s) 1026
ApoI RAATTY 6 cut(s) 80, 295, 301, 596, 1343, 1398
AsiGI ACCGGT 1 cut(s) 1166
AspLEI GCGC 1 cut(s) 180
AsuC2I CCSGG 2 cut(s) 256, 281
AsuHPI GGTGA 3 cut(s) 674, 1133, 1181
AsuII TTCGAA 2 cut(s) 299, 1468
AvaI CYCGRG 1 cut(s) 1026
BarI GAAGNNNNNNTAC 2 cut(s) 1000, 1032
BbsI GAAGAC 2 cut(s) 30, 300
Bbv12I GWGCWC 1 cut(s) 942
BccI CCATC 4 cut(s) 778, 937, 1118, 1393
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 2 cut(s) 316, 898
BcnI CCSGG 2 cut(s) 256, 281
BcoDI GTCTC 4 cut(s) 233, 408, 430, 1029
BfaI CTAG 3 cut(s) 912, 1101, 1224
BfuAI ACCTGC 1 cut(s) 259
BglII AGATCT 2 cut(s) 532, 562
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 3 cut(s) 256, 281, 443
BmeT110I CYCGRG 1 cut(s) 1026
BmrFI CCNGG 3 cut(s) 256, 281, 443
BmsI GCATC 1 cut(s) 949
BoxI GACNNNNGTC 1 cut(s) 1419
BpiI GAAGAC 2 cut(s) 30, 300
BpmI CTGGAG 1 cut(s) 1470
Bpu14I TTCGAA 2 cut(s) 299, 1468
BpuEI CTTGAG 2 cut(s) 1174, 1222
BpuMI CCSGG 2 cut(s) 256, 281
BsaJI CCNNGG 2 cut(s) 255, 279
BsaWI WCCGGW 1 cut(s) 1166
BsaXI ACNNNNNCTCC 2 cut(s) 1362, 1392
Bsc4I CCNNNNNNNGG 3 cut(s) 674, 1012, 1182
Bse118I RCCGGY 1 cut(s) 1166
Bse1I ACTGG 3 cut(s) 1354, 1432, 1453
Bse3DI GCAATG 1 cut(s) 418
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 2 cut(s) 255, 279
BseGI GGATG 1 cut(s) 770
BseLI CCNNNNNNNGG 3 cut(s) 674, 1012, 1182
BseMI GCAATG 1 cut(s) 418
BseMII CTCAG 4 cut(s) 254, 365, 449, 954
BseNI ACTGG 3 cut(s) 1354, 1432, 1453
BseRI GAGGAG 1 cut(s) 280
Bsh1236I CGCG 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 1166
BsiHKAI GWGCWC 1 cut(s) 942
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 3 cut(s) 255, 281, 1167
BslI CCNNNNNNNGG 3 cut(s) 674, 1012, 1182
BsmAI GTCTC 4 cut(s) 233, 408, 430, 1029
BsmBI CGTCTC 2 cut(s) 233, 430
BsoBI CYCGRG 1 cut(s) 1026
Bsp119I TTCGAA 2 cut(s) 299, 1468
Bsp1286I GDGCHC 1 cut(s) 942
BspACI CCGC 1 cut(s) 135
BspCNI CTCAG 4 cut(s) 255, 364, 450, 955
BspFNI CGCG 1 cut(s) 180
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 6 cut(s) 101, 488, 659, 713, 725, 1193
BspT104I TTCGAA 2 cut(s) 299, 1468
BsrDI GCAATG 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 1166
BsrI ACTGG 3 cut(s) 1354, 1432, 1453
BssAI RCCGGY 1 cut(s) 1166
BssECI CCNNGG 2 cut(s) 255, 279
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 3 cut(s) 855, 1023, 1121
Bst6I CTCTTC 4 cut(s) 709, 823, 1003, 1272
BstBI TTCGAA 2 cut(s) 299, 1468
BstC8I GCNNGC 1 cut(s) 1337
BstDEI CTNAG 8 cut(s) 203, 263, 351, 458, 576, 963, 1056, 1455
BstF5I GGATG 1 cut(s) 770
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 180
BstMAI GTCTC 4 cut(s) 233, 408, 430, 1029
BstMWI GCNNNNNNNGC 4 cut(s) 175, 184, 341, 1451
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 911
BstPAI GACNNNNGTC 1 cut(s) 1419
BstSCI CCNGG 3 cut(s) 254, 279, 441
BstUI CGCG 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 30, 300
BstX2I RGATCY 6 cut(s) 106, 480, 532, 562, 718, 1185
BstYI RGATCY 6 cut(s) 106, 480, 532, 562, 718, 1185
BtgZI GCGATG 1 cut(s) 305
BtsCI GGATG 1 cut(s) 770
BtsIMutI CAGTG 2 cut(s) 924, 1347
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 1337
CfoI GCGC 1 cut(s) 180
Cfr10I RCCGGY 1 cut(s) 1166
Csp6I GTAC 6 cut(s) 159, 430, 582, 1017, 1087, 1379
CspAI ACCGGT 1 cut(s) 1166
CspCI CAANNNNNGTGG 2 cut(s) 1222, 1257
CviAII CATG 4 cut(s) 908, 1079, 1311, 1340
CviQI GTAC 6 cut(s) 159, 430, 582, 1017, 1087, 1379
DdeI CTNAG 8 cut(s) 203, 263, 351, 458, 576, 963, 1056, 1455
DrdI GACNNNNNNGTC 1 cut(s) 422
DseDI GACNNNNNNGTC 1 cut(s) 422
Eam1104I CTCTTC 4 cut(s) 709, 823, 1003, 1272
EarI CTCTTC 4 cut(s) 709, 823, 1003, 1272
EciI GGCGGA 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 966
Eco88I CYCGRG 1 cut(s) 1026
EcoRI GAATTC 2 cut(s) 301, 1343
EcoRII CCWGG 1 cut(s) 441
Esp3I CGTCTC 2 cut(s) 233, 430
FaeI CATG 4 cut(s) 911, 1082, 1314, 1343
FalI AAGNNNNNCTT 2 cut(s) 706, 738
FatI CATG 4 cut(s) 907, 1078, 1310, 1339
FauNDI CATATG 1 cut(s) 1066
FbaI TGATCA 2 cut(s) 316, 898
FblI GTMKAC 2 cut(s) 87, 1256
FokI GGATG 1 cut(s) 757
FspBI CTAG 3 cut(s) 912, 1101, 1224
GlaI GCGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 1470
HapII CCGG 3 cut(s) 255, 281, 1167
HhaI GCGC 1 cut(s) 180
Hin1II CATG 4 cut(s) 911, 1082, 1314, 1343
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HincII GTYRAC 1 cut(s) 1257
HindII GTYRAC 1 cut(s) 1257
HpaII CCGG 3 cut(s) 255, 281, 1167
HphI GGTGA 3 cut(s) 674, 1133, 1181
Hpy166II GTNNAC 3 cut(s) 88, 1019, 1257
Hpy188III TCNNGA 8 cut(s) 77, 339, 593, 744, 902, 1026, 1191, 1391
Hpy8I GTNNAC 3 cut(s) 88, 1019, 1257
Hpy99I CGWCG 2 cut(s) 247, 1407
HpyAV CCTTC 2 cut(s) 139, 1453
HpyCH4III ACNGT 3 cut(s) 855, 1023, 1121
HpyCH4IV ACGT 1 cut(s) 423
HpyCH4V TGCA 3 cut(s) 632, 809, 1445
HpyF10VI GCNNNNNNNGC 4 cut(s) 175, 184, 341, 1451
HpyF3I CTNAG 8 cut(s) 203, 263, 351, 458, 576, 963, 1056, 1455
HpySE526I ACGT 1 cut(s) 423
Hsp92II CATG 4 cut(s) 911, 1082, 1314, 1343
HspAI GCGC 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 316, 898
LmnI GCTCC 1 cut(s) 1451
LweI GCATC 1 cut(s) 949
MaeI CTAG 3 cut(s) 912, 1101, 1224
MaeII ACGT 1 cut(s) 423
MaeIII GTNAC 3 cut(s) 493, 1060, 1219
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 6 cut(s) 106, 480, 532, 562, 718, 1185
MhlI GDGCHC 1 cut(s) 942
MlyI GAGTC 2 cut(s) 1258, 1262
MmeI TCCRAC 2 cut(s) 152, 798
MseI TTAA 5 cut(s) 63, 72, 836, 1002, 1292
MslI CAYNNNNRTG 1 cut(s) 411
MspI CCGG 3 cut(s) 255, 281, 1167
MspR9I CCNGG 3 cut(s) 256, 281, 443
MunI CAATTG 1 cut(s) 840
MvaI CCWGG 1 cut(s) 443
MvnI CGCG 1 cut(s) 180
MwoI GCNNNNNNNGC 4 cut(s) 175, 184, 341, 1451
NciI CCSGG 2 cut(s) 256, 281
NdeI CATATG 1 cut(s) 1066
NlaIII CATG 4 cut(s) 911, 1082, 1314, 1343
NspI RCATGY 1 cut(s) 911
NspV TTCGAA 2 cut(s) 299, 1468
PaeR7I CTCGAG 1 cut(s) 1026
PfeI GAWTC 8 cut(s) 50, 199, 616, 953, 973, 985, 1197, 1470
PflMI CCANNNNNTGG 1 cut(s) 674
PfoI TCCNGGA 1 cut(s) 441
PinAI ACCGGT 1 cut(s) 1166
PleI GAGTC 2 cut(s) 1258, 1261
PpsI GAGTC 2 cut(s) 1258, 1261
PshAI GACNNNNGTC 1 cut(s) 1419
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PsuI RGATCY 6 cut(s) 106, 480, 532, 562, 718, 1185
RsaI GTAC 6 cut(s) 160, 431, 583, 1018, 1088, 1380
RsaNI GTAC 6 cut(s) 159, 430, 582, 1017, 1087, 1379
RseI CAYNNNNRTG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 1255
SaqAI TTAA 5 cut(s) 63, 72, 836, 1002, 1292
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 2 cut(s) 1258, 1262
ScrFI CCNGG 3 cut(s) 256, 281, 443
SduI GDGCHC 1 cut(s) 942
SfaNI GCATC 1 cut(s) 949
Sfr274I CTCGAG 1 cut(s) 1026
SfuI TTCGAA 2 cut(s) 299, 1468
SlaI CTCGAG 1 cut(s) 1026
SmiMI CAYNNNNRTG 1 cut(s) 411
SmlI CTYRAG 3 cut(s) 1026, 1189, 1237
SmoI CTYRAG 3 cut(s) 1026, 1189, 1237
SsiI CCGC 1 cut(s) 135
SspMI CTAG 3 cut(s) 912, 1101, 1224
StyD4I CCNGG 3 cut(s) 254, 279, 441
TaaI ACNGT 3 cut(s) 855, 1023, 1121
TaiI ACGT 1 cut(s) 426
TaqI TCGA 9 cut(s) 299, 363, 745, 765, 1027, 1256, 1278, 1433, 1468
TatI WGTACW 1 cut(s) 581
TfiI GAWTC 8 cut(s) 50, 199, 616, 953, 973, 985, 1197, 1470
Tru1I TTAA 5 cut(s) 63, 72, 836, 1002, 1292
Tru9I TTAA 5 cut(s) 63, 72, 836, 1002, 1292
TscAI CASTG 2 cut(s) 924, 1354
TspDTI ATGAA 5 cut(s) 876, 1296, 1302, 1314, 1356
TspRI CASTG 2 cut(s) 924, 1354
Van91I CCANNNNNTGG 1 cut(s) 674
XapI RAATTY 6 cut(s) 80, 295, 301, 596, 1343, 1398
XceI RCATGY 1 cut(s) 911
XcmI CCANNNNNNNNNTGG 2 cut(s) 449, 1424
XhoI CTCGAG 1 cut(s) 1026
XmiI GTMKAC 2 cut(s) 87, 1256
XspI CTAG 3 cut(s) 912, 1101, 1224
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.