Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005437

Physical Location & Seq

Genomic Coordinates Forward (+)

29717019 .. 29719383

Gene Structure 2365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTGAAGCGGCTTTGTTGCTCTGGGTGGTTGGTTTTTAGTAGCTGTCTACTGCTAGCAGCTCTTGTTTCCTCCAAGCACCATGGAAACCCTGCAAATGATCTTGTTGAGATTATCAACAACAATCGAACGTCTCACAAACTTTCCAAACTAAATGACAGTCCTGGACTTGGGTGTATGGCTCTGCAATTTGCTAAATCATGCAAGGGAAACTGTAGTAGGAATGGCACTATCAACTGTACGCCATCTGAAGACGACTTCACCGAAGTGTTTGCCCCAAATTGTGGCGTTGAGCTACCCACTTTCGGCACCATAACTGGACACATTGTGGGTTGTCACTCCAAGTATCTAGAGCCATCATTAGCTTTTATAAATGTTCTTGTTGGAAACAACAAGGCTTTGTCAATTCTTCGGAATAAGTCACATAATGAGGTGGGAGTAGGTATGGTTGGGGTTCACAAAGGGCCCTTCTTTTGGACTGTGCTCTTCAGTAGTGGGAAGACAAATTCTACATTTGTTCTAGAAAATCGGGGTGCGGGGATTCAGCAGAAGAAAGGTTGCTATAGTGGAAGCAGCATCCCTTGCAGTGCAGGACAAAAGATTAAAGCTGGTTCTGTGATTTTCAACAATGTTATGATCATAGGTTTTCTTTGTGCTCATCTTCTGCAAAAGTTGTACTTCAACTTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

230

Amino Acids

24.71

Weight (kDa)

9.12

Isoelectric Point (pI)

38.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45380 AT2G45380 AT2G45380 AT2G45380
fragaria_vesca	FvH4_7g11720 FvH4_7g11720 FvH4_7g11720 FvH4_7g11720
malus_domestica	MD02G1205300.v1.1 MD07G1121800.v1.1
prunus_persica	Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1
pyrus_communis	pycom02g16720 pycom07g10420
rosa_chinensis	RchiOBHm_Chr1g0350241
rosa_laevigata	RLG00000028497
rosa_multiflora	Rmu_sc0001037.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304960
rosa_rugosa	Rorug01G0210000 Rorug01G0210000 Rorug01G0210100
rosa_samantha	Rh1AG225200 Rh1BG193100 Rh1CG210000 Rh1DG221400
rosa_wichuraiana	Rw0G018810 Rw1G019360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	371
AccB1I	GGYRCC	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccI	GTMKAC	1 cut(s)	49
AciI	CCGC	2 cut(s)	10, 536
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	2 cut(s)	270, 472
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	2 cut(s)	241, 677
AfiI	CCNNNNNNNGG	4 cut(s)	170, 284, 305, 474
AgsI	TTSAA	2 cut(s)	625, 682
AjnI	CCWGG	1 cut(s)	163
AleI	CACNNNNGTG	1 cut(s)	266
AluBI	AGCT	5 cut(s)	45, 62, 295, 365, 608
AluI	AGCT	5 cut(s)	45, 62, 295, 365, 608
Alw21I	GWGCWC	2 cut(s)	486, 658
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	1 cut(s)	464
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	59, 573
ApoI	RAATTY	1 cut(s)	505
AspS9I	GGNCC	2 cut(s)	464, 465
AsuHPI	GGTGA	2 cut(s)	16, 253
AsuNHI	GCTAGC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	468
BbsI	GAAGAC	2 cut(s)	258, 506
Bbv12I	GWGCWC	2 cut(s)	486, 658
BbvI	GCAGC	2 cut(s)	71, 585
BccI	CCATC	2 cut(s)	253, 364
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	3 cut(s)	56, 350, 521
BfmI	CTRYAG	2 cut(s)	214, 562
BisI	GCNGC	3 cut(s)	11, 60, 574
BlsI	GCNGC	3 cut(s)	12, 61, 575
Bme1390I	CCNGG	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	464, 465
BmiI	GGNNCC	2 cut(s)	310, 466
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	585
BmtI	GCTAGC	1 cut(s)	59
BpiI	GAAGAC	2 cut(s)	258, 506
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 284, 305, 474
Bse1I	ACTGG	1 cut(s)	322
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	576
BseLI	CCNNNNNNNGG	4 cut(s)	170, 284, 305, 474
BseNI	ACTGG	1 cut(s)	322
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	71, 585
BsgI	GTGCAG	1 cut(s)	609
BshFI	GGCC	1 cut(s)	466
BshNI	GGYRCC	1 cut(s)	308
BsiHKAI	GWGCWC	2 cut(s)	486, 658
BslI	CCNNNNNNNGG	4 cut(s)	170, 284, 305, 474
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	466
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	468, 486, 658
Bsp143I	GATC	2 cut(s)	100, 636
Bsp19I	CCATGG	1 cut(s)	82
BspACI	CCGC	2 cut(s)	10, 536
BspANI	GGCC	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	310, 466
BspOI	GCTAGC	1 cut(s)	59
BspQI	GCTCTTC	1 cut(s)	491
BspT107I	GGYRCC	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	322
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	2 cut(s)	100, 636
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	4 cut(s)	161, 215, 239, 481
Bst6I	CTCTTC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	576
BstKTI	GATC	2 cut(s)	103, 639
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	100, 636
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	2 cut(s)	214, 562
BstSLI	GKGCMC	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	71, 585
BstV2I	GAAGAC	2 cut(s)	258, 506
BsuRI	GGCC	1 cut(s)	466
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	576
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	592
Cac8I	GCNNGC	1 cut(s)	57
Cfr13I	GGNCC	2 cut(s)	464, 465
Csp6I	GTAC	2 cut(s)	240, 676
CviAII	CATG	2 cut(s)	83, 201
CviQI	GTAC	2 cut(s)	240, 676
DpnI	GATC	2 cut(s)	102, 638
DpnII	GATC	2 cut(s)	100, 636
DraIII	CACNNNGTG	1 cut(s)	328
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	468
Eco57I	CTGAAG	2 cut(s)	270, 472
EcoO109I	RGGNCCY	2 cut(s)	464, 465
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	468
ErhI	CCWWGG	1 cut(s)	82
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	86, 204
FalI	AAGNNNNNCTT	1 cut(s)	662
FatI	CATG	2 cut(s)	82, 200
FauI	CCCGC	1 cut(s)	529
FbaI	TGATCA	1 cut(s)	636
FblI	GTMKAC	1 cut(s)	49
Fnu4HI	GCNGC	3 cut(s)	11, 60, 574
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	468
Fsp4HI	GCNGC	3 cut(s)	11, 60, 574
FspBI	CTAG	3 cut(s)	56, 350, 521
GluI	GCNGC	3 cut(s)	11, 60, 574
HaeIII	GGCC	1 cut(s)	466
Hin1II	CATG	2 cut(s)	86, 204
HinfI	GANTC	1 cut(s)	541
HphI	GGTGA	2 cut(s)	16, 253
Hpy166II	GTNNAC	2 cut(s)	50, 457
Hpy188I	TCNGA	2 cut(s)	250, 414
Hpy188III	TCNNGA	2 cut(s)	350, 521
Hpy8I	GTNNAC	2 cut(s)	50, 457
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	4 cut(s)	161, 215, 239, 481
HpyCH4IV	ACGT	1 cut(s)	131
HpyCH4V	TGCA	6 cut(s)	95, 187, 204, 585, 590, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpySE526I	ACGT	1 cut(s)	131
Hsp92II	CATG	2 cut(s)	86, 204
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	100, 636
LguI	GCTCTTC	1 cut(s)	491
LpnPI	CCDG	7 cut(s)	9, 105, 150, 177, 303, 576, 594
Lsp1109I	GCAGC	2 cut(s)	71, 585
LweI	GCATC	1 cut(s)	585
MaeI	CTAG	3 cut(s)	56, 350, 521
MaeII	ACGT	1 cut(s)	131
MaeIII	GTNAC	2 cut(s)	335, 420
MalI	GATC	2 cut(s)	102, 638
MboI	GATC	2 cut(s)	100, 636
MboII	GAAGA	6 cut(s)	263, 401, 478, 511, 562, 653
MhlI	GDGCHC	3 cut(s)	468, 486, 658
MluCI	AATT	4 cut(s)	188, 280, 405, 505
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	2 cut(s)	82, 424
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	1 cut(s)	266
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	82
NdeII	GATC	2 cut(s)	100, 636
NheI	GCTAGC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	86, 204
NlaIV	GGNNCC	2 cut(s)	310, 466
NmuCI	GTSAC	2 cut(s)	335, 420
OliI	CACNNNNGTG	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	491
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	541
PflMI	CCANNNNNTGG	1 cut(s)	284
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	12, 61, 575
PsiI	TTATAA	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	310, 466
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	2 cut(s)	464, 465
RsaI	GTAC	2 cut(s)	241, 677
RsaNI	GTAC	2 cut(s)	240, 676
RseI	CAYNNNNRTG	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	11, 60, 574
Sau3AI	GATC	2 cut(s)	100, 636
Sau96I	GGNCC	2 cut(s)	464, 465
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	3 cut(s)	468, 486, 658
SfaNI	GCATC	1 cut(s)	585
SfcI	CTRYAG	2 cut(s)	214, 562
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	188, 280, 405, 505
SsiI	CCGC	2 cut(s)	10, 536
SspMI	CTAG	3 cut(s)	56, 350, 521
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	4 cut(s)	161, 215, 239, 481
TaiI	ACGT	1 cut(s)	134
TaqI	TCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	188, 280, 405, 505
TatI	WGTACW	1 cut(s)	675
TauI	GCSGC	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	541
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	2 cut(s)	335, 420
TseI	GCWGC	2 cut(s)	59, 573
Tsp45I	GTSAC	2 cut(s)	335, 420
TspRI	CASTG	1 cut(s)	592
Van91I	CCANNNNNTGG	1 cut(s)	284
XapI	RAATTY	1 cut(s)	505
XbaI	TCTAGA	2 cut(s)	349, 520
XmiI	GTMKAC	1 cut(s)	49
XspI	CTAG	3 cut(s)	56, 350, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.