Rw1G019360

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005437
Physical Location & Seq
Reverse (-)
42402646 .. 42405920
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019360.1

Sequence Viewer

Length: 558 bp
ATGGATGAAGAGACAGGCAAGAACACGAGTAAAAGAGGTGATTTCAACAAGGTGCAAGGCACACAGCCCCAGGGTCGTAGTGCCTCTGTTCAGAGTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACTTCTACAAGAACCAGAAGGGCAGGCAATGATGGCGTGAAGATTGAGGAGACCAAAGAAGCAGATAGGACAACTGGTCGAGCAACACATAAGATATCTAGAGGAATTCATGATAAGGGTCATTCTGTTACAAGGAAGCTTAACCCAGATGGAAAGGTGCATGTGTGGCAAACTTTACACAATCTGAATGAAGATGAGCTTGCTGGTTTTGAAGAAGCATGGAATGGTAATGTTAAGGTGGACTTACCTGGCTGGAAAGAATTTGACAACCTTGGTGAACAGAAGGGCAATGCACCTTGGAGTGCTGGGCTCCTTCAATCTTCAGAGCAACCACAAAGCTCCAGAGGGATTAGACCAGGGAATGTAACTGGGACTACCTCTGATGGGAGAACCAAGAAGGTTGTTAGAATCAATATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

185

Amino Acids

20.32

Weight (kDa)

9.21

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 12 - 121 4.1e-19 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 240, 395
AcuI CTGAAG 1 cut(s) 441
AfiI CCNNNNNNNGG 1 cut(s) 519
AgsI TTSAA 3 cut(s) 46, 347, 452
AhdI GACNNNNNGTC 1 cut(s) 210
AjnI CCWGG 3 cut(s) 69, 382, 490
AluBI AGCT 3 cut(s) 274, 334, 474
AluI AGCT 3 cut(s) 274, 334, 474
Alw26I GTCTC 2 cut(s) 5, 179
ApoI RAATTY 2 cut(s) 240, 395
AsuHPI GGTGA 2 cut(s) 50, 422
BanII GRGCYC 1 cut(s) 447
BauI CACGAG 1 cut(s) 25
BccI CCATC 4 cut(s) 116, 161, 278, 512
BciT130I CCWGG 3 cut(s) 71, 384, 492
BcoDI GTCTC 2 cut(s) 5, 179
BfaI CTAG 1 cut(s) 234
Bme1390I CCNGG 3 cut(s) 71, 384, 492
BmeRI GACNNNNNGTC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 446
BmrFI CCNGG 3 cut(s) 71, 384, 492
BmrI ACTGGG 1 cut(s) 513
BmuI ACTGGG 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 179
BsaJI CCNNGG 5 cut(s) 69, 70, 406, 431, 491
Bsc4I CCNNNNNNNGG 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 214, 508
Bse3DI GCAATG 2 cut(s) 169, 430
BseBI CCWGG 3 cut(s) 71, 384, 492
BseDI CCNNGG 5 cut(s) 69, 70, 406, 431, 491
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 519
BseMI GCAATG 2 cut(s) 169, 430
BseNI ACTGG 2 cut(s) 214, 508
BseRI GAGGAG 1 cut(s) 197
BseYI CCCAGC 1 cut(s) 440
BslFI GGGAC 1 cut(s) 520
BslI CCNNNNNNNGG 1 cut(s) 519
BsmAI GTCTC 2 cut(s) 5, 179
BsmFI GGGAC 1 cut(s) 520
Bso31I GGTCTC 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 447
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 179
BsrDI GCAATG 2 cut(s) 169, 430
BsrI ACTGG 2 cut(s) 214, 508
BssECI CCNNGG 5 cut(s) 69, 70, 406, 431, 491
BssSI CACGAG 1 cut(s) 25
BssT1I CCWWGG 2 cut(s) 406, 431
Bst2BI CACGAG 1 cut(s) 25
Bst2UI CCWGG 3 cut(s) 71, 384, 492
Bst6I CTCTTC 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 160, 336
BstF5I GGATG 1 cut(s) 10
BstMAI GTCTC 2 cut(s) 5, 179
BstMWI GCNNNNNNNGC 2 cut(s) 168, 301
BstNI CCWGG 3 cut(s) 71, 384, 492
BstNSI RCATGY 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 69, 382, 490
BtsCI GGATG 1 cut(s) 10
Cac8I GCNNGC 2 cut(s) 160, 336
CciI TCATGA 1 cut(s) 244
CviAII CATG 3 cut(s) 245, 296, 354
CviJI RGCY 6 cut(s) 67, 274, 334, 387, 445, 474
CviKI_1 RGCY 6 cut(s) 67, 274, 334, 387, 445, 474
DriI GACNNNNNGTC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 2 cut(s) 406, 431
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 179
Eco32I GATATC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 441
EcoRI GAATTC 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 69, 382, 490
EcoRV GATATC 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 406, 431
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 2 cut(s) 406, 431
FaeI CATG 3 cut(s) 248, 299, 357
FaiI YATR 8 cut(s) 109, 111, 130, 225, 246, 297, 355, 551
FalI AAGNNNNNCTT 4 cut(s) 318, 350, 362, 394
FaqI GGGAC 1 cut(s) 520
FatI CATG 3 cut(s) 244, 295, 353
FauNDI CATATG 1 cut(s) 109
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 447
FspBI CTAG 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 460
Hin1II CATG 3 cut(s) 248, 299, 357
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 102, 543
HphI GGTGA 2 cut(s) 50, 422
Hpy166II GTNNAC 2 cut(s) 376, 413
Hpy188I TCNGA 4 cut(s) 93, 321, 460, 517
Hpy188III TCNNGA 3 cut(s) 234, 245, 477
Hpy8I GTNNAC 2 cut(s) 376, 413
HpyAV CCTTC 4 cut(s) 147, 412, 458, 526
HpyCH4V TGCA 4 cut(s) 55, 99, 295, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 301
Hsp92II CATG 3 cut(s) 248, 299, 357
LmnI GCTCC 3 cut(s) 125, 450, 479
MaeI CTAG 1 cut(s) 234
MaeIII GTNAC 3 cut(s) 103, 262, 499
MboII GAAGA 5 cut(s) 20, 187, 338, 359, 447
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 2 cut(s) 240, 395
MlyI GAGTC 1 cut(s) 111
MnlI CCTC 6 cut(s) 29, 94, 175, 230, 473, 523
MseI TTAA 2 cut(s) 276, 369
MspR9I CCNGG 3 cut(s) 71, 384, 492
MvaI CCWGG 3 cut(s) 71, 384, 492
MwoI GCNNNNNNNGC 2 cut(s) 168, 301
NdeI CATATG 1 cut(s) 109
NlaIII CATG 3 cut(s) 248, 299, 357
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 103
NspI RCATGY 1 cut(s) 299
PagI TCATGA 1 cut(s) 244
PasI CCCWGGG 1 cut(s) 70
PfeI GAWTC 1 cut(s) 543
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 69, 382, 490
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 69, 382, 490
PspN4I GGNNCC 1 cut(s) 446
SaqAI TTAA 2 cut(s) 276, 369
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 71, 384, 492
SduI GDGCHC 1 cut(s) 447
Sse9I AATT 2 cut(s) 240, 395
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 3 cut(s) 69, 382, 490
StyI CCWWGG 2 cut(s) 406, 431
TaqI TCGA 1 cut(s) 214
TasI AATT 2 cut(s) 240, 395
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 2 cut(s) 276, 369
Tru9I TTAA 2 cut(s) 276, 369
TseFI GTSAC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 3 cut(s) 21, 233, 339
XapI RAATTY 2 cut(s) 240, 395
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 1 cut(s) 299
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.