Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005437

Physical Location & Seq

Genomic Coordinates Reverse (-)

43105121 .. 43108993

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG221400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCAAAGCGAAAGGCAAGGCAGACGCGGTTTCTCTCGCTCAGATGACCTGTTAAATAGTTTCCCGGGGTTTGGATCTCGTAGAAGCATGTTGCCTAGCCTCTTCAGTGGAAGGGATCCATTTGATGATCCCTTCTTCAGTCGGCCGCTTGGAGACATGTTTGAGTCTAGCATGTTCGGTCCAAGTGCTGCTTCTAGTGATACACCACGGAGTGGTAGAGATGGGGGAATCATAGTAGAAGAACTAGACTCTGATGATGATGGAGAGGAAGATGAGGTTACTGGAGATGGGAGAGATAAGAGGAAACAACGAGTTGTGTCGAGCAAAGAGCCATCTGTTGAGCATCCGGATGATGATGATATGGATGAAGAGACGGGCAAGAACACGAGTAAAAGAGGTGATTTCAACAAGGTTCAAGGCACACAGCCCCAGGGTGGTAGTGCCTCTTTTCAGAGTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACTTCTACAAGAACCAGAAGGGCAGGCAATGATGGCGTAAGTAATAGTATGTGGGATTTGATATGTTATTTTTATTCTTCTTGCTTTAACTTTGCAACTGTGAAGCAGGTGAAGATTGAGGAGACCAAAGAAGCAGATAGGACAACTGGTCGAGCAACACATAAGATATCTAGAGGAATTCATGATAAGGTACACCTTTTCTGCTCATGCAGCCTGCACAACAGATATAACCACGAACTGCAGTTTTGGGTGCTAATAATTTTGGTTAATAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

257

Amino Acids

28.79

Weight (kDa)

5.45

Isoelectric Point (pI)

55.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45380 AT2G45380 AT2G45380 AT2G45380
fragaria_vesca	FvH4_7g11720 FvH4_7g11720 FvH4_7g11720 FvH4_7g11720
malus_domestica	MD02G1205300.v1.1 MD07G1121800.v1.1
prunus_persica	Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1
pyrus_communis	pycom02g16720 pycom07g10420
rosa_chinensis	RchiOBHm_Chr1g0350241
rosa_laevigata	RLG00000028497
rosa_multiflora	Rmu_sc0001037.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304960
rosa_rugosa	Rorug01G0210000 Rorug01G0210000 Rorug01G0210100
rosa_samantha	Rh1AG225200 Rh1BG193100 Rh1CG210000 Rh1DG221400
rosa_wichuraiana	Rw0G018810 Rw1G019360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	592
Acc36I	ACCTGC	1 cut(s)	592
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	2 cut(s)	27, 146
AclWI	GGATC	4 cut(s)	82, 110, 122, 123
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	672
AcuI	CTGAAG	2 cut(s)	88, 121
AdeI	CACNNNGTG	1 cut(s)	212
AfaI	GTAC	1 cut(s)	687
AfiI	CCNNNNNNNGG	3 cut(s)	71, 212, 434
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	2 cut(s)	406, 416
AhdI	GACNNNNNGTC	1 cut(s)	642
AjnI	CCWGG	1 cut(s)	429
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
Alw26I	GTCTC	3 cut(s)	147, 365, 611
AlwI	GGATC	4 cut(s)	82, 110, 122, 123
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	188, 705
ApoI	RAATTY	1 cut(s)	672
AspS9I	GGNCC	1 cut(s)	179
AsuC2I	CCSGG	2 cut(s)	65, 66
AsuHPI	GGTGA	2 cut(s)	410, 616
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	179
BamHI	GGATCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	385
BbvI	GCAGC	2 cut(s)	175, 717
BccI	CCATC	6 cut(s)	215, 254, 281, 340, 476, 521
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	2 cut(s)	65, 66
BcoDI	GTCTC	3 cut(s)	147, 365, 611
BfaI	CTAG	5 cut(s)	96, 168, 195, 245, 666
BfmI	CTRYAG	1 cut(s)	734
BfuAI	ACCTGC	1 cut(s)	592
BisI	GCNGC	3 cut(s)	146, 189, 706
BlsI	GCNGC	3 cut(s)	147, 190, 707
Bme1390I	CCNGG	3 cut(s)	65, 66, 431
Bme18I	GGWCC	1 cut(s)	179
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	3 cut(s)	65, 66, 431
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	1 cut(s)	303
BpuMI	CCSGG	2 cut(s)	65, 66
BsaI	GGTCTC	1 cut(s)	611
BsaJI	CCNNGG	5 cut(s)	64, 65, 206, 429, 430
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 212, 434
Bse1I	ACTGG	2 cut(s)	286, 646
Bse3DI	GCAATG	1 cut(s)	529
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	5 cut(s)	64, 65, 206, 429, 430
BseGI	GGATG	3 cut(s)	343, 355, 370
BseLI	CCNNNNNNNGG	3 cut(s)	71, 212, 434
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	286, 646
BseRI	GAGGAG	1 cut(s)	629
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	175, 717
BsgI	GTGCAG	1 cut(s)	695
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	65, 347
BslI	CCNNNNNNNGG	3 cut(s)	71, 212, 434
BsmAI	GTCTC	3 cut(s)	147, 365, 611
BsmBI	CGTCTC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	64
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	74, 115, 127
BspACI	CCGC	2 cut(s)	27, 146
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	1 cut(s)	117
BspMAI	CTGCAG	1 cut(s)	738
BspMI	ACCTGC	1 cut(s)	592
BspPI	GGATC	4 cut(s)	82, 110, 122, 123
BspTNI	GGTCTC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	286, 646
BssECI	CCNNGG	5 cut(s)	64, 65, 206, 429, 430
BssMI	GATC	3 cut(s)	74, 115, 127
BssSI	CACGAG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	385
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	595
Bst6I	CTCTTC	2 cut(s)	107, 363
BstC8I	GCNNGC	2 cut(s)	520, 710
BstDEI	CTNAG	1 cut(s)	40
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	3 cut(s)	343, 355, 370
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	77, 118, 130
BstMAI	GTCTC	3 cut(s)	147, 365, 611
BstMBI	GATC	3 cut(s)	74, 115, 127
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	2 cut(s)	528, 705
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	3 cut(s)	91, 160, 175
BstSCI	CCNGG	3 cut(s)	63, 64, 429
BstSFI	CTRYAG	1 cut(s)	734
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	2 cut(s)	175, 717
BstX2I	RGATCY	2 cut(s)	74, 115
BstYI	RGATCY	2 cut(s)	74, 115
BstZI	CGGCCG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	343, 355, 370
BtsIMutI	CAGTG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	592
Cac8I	GCNNGC	2 cut(s)	520, 710
CciI	TCATGA	1 cut(s)	676
Cfr13I	GGNCC	1 cut(s)	179
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	686
CviAII	CATG	5 cut(s)	88, 157, 172, 677, 702
CviJI	RGCY	5 cut(s)	99, 145, 331, 427, 708
CviKI_1	RGCY	5 cut(s)	99, 145, 331, 427, 708
CviQI	GTAC	1 cut(s)	686
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	76, 117, 129
DpnII	GATC	3 cut(s)	74, 115, 127
DraIII	CACNNNGTG	1 cut(s)	212
DriI	GACNNNNNGTC	1 cut(s)	642
EaeI	YGGCCR	1 cut(s)	143
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	107, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	642
EarI	CTCTTC	2 cut(s)	107, 363
EclXI	CGGCCG	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	179
Eco52I	CGGCCG	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	88, 121
Eco88I	CYCGRG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	672
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	663
Esp3I	CGTCTC	1 cut(s)	365
FaeI	CATG	5 cut(s)	91, 160, 175, 680, 705
FalI	AAGNNNNNCTT	2 cut(s)	175, 207
FatI	CATG	5 cut(s)	87, 156, 171, 676, 701
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	146, 189, 706
FokI	GGATG	3 cut(s)	330, 362, 377
Fsp4HI	GCNGC	3 cut(s)	146, 189, 706
FspBI	CTAG	5 cut(s)	96, 168, 195, 245, 666
GluI	GCNGC	3 cut(s)	146, 189, 706
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	2 cut(s)	65, 347
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	91, 160, 175, 680, 705
HinfI	GANTC	4 cut(s)	164, 228, 248, 462
HpaII	CCGG	2 cut(s)	65, 347
HphI	GGTGA	2 cut(s)	410, 616
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	3 cut(s)	43, 253, 453
Hpy188III	TCNNGA	3 cut(s)	347, 666, 677
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	3 cut(s)	105, 142, 507
HpyCH4III	ACNGT	1 cut(s)	595
HpyCH4V	TGCA	6 cut(s)	4, 459, 590, 705, 712, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	528, 705
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	91, 160, 175, 680, 705
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	74, 115, 127
LmnI	GCTCC	1 cut(s)	485
Lsp1109I	GCAGC	2 cut(s)	175, 717
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	5 cut(s)	96, 168, 195, 245, 666
MaeIII	GTNAC	2 cut(s)	277, 463
MalI	GATC	3 cut(s)	76, 117, 129
MboI	GATC	3 cut(s)	74, 115, 127
MboII	GAAGA	7 cut(s)	94, 127, 251, 281, 380, 564, 619
MflI	RGATCY	2 cut(s)	74, 115
MluCI	AATT	2 cut(s)	672, 753
MlyI	GAGTC	3 cut(s)	173, 242, 471
MnlI	CCTC	8 cut(s)	110, 259, 268, 294, 389, 454, 607, 662
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	3 cut(s)	53, 582, 762
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	2 cut(s)	65, 347
MspR9I	CCNGG	3 cut(s)	65, 66, 431
MvaI	CCWGG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	528, 705
NciI	CCSGG	2 cut(s)	65, 66
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	3 cut(s)	74, 115, 127
NlaIII	CATG	5 cut(s)	91, 160, 175, 680, 705
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	3 cut(s)	91, 160, 175
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	592
PasI	CCCWGGG	1 cut(s)	430
PciI	ACATGT	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	228
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	147, 190, 707
PleI	GAGTC	3 cut(s)	172, 242, 470
PpsI	GAGTC	3 cut(s)	172, 242, 470
PscI	ACATGT	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	1 cut(s)	179
PstI	CTGCAG	1 cut(s)	738
PsuI	RGATCY	2 cut(s)	74, 115
RsaI	GTAC	1 cut(s)	687
RsaNI	GTAC	1 cut(s)	686
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	3 cut(s)	53, 582, 762
SatI	GCNGC	3 cut(s)	146, 189, 706
Sau3AI	GATC	3 cut(s)	74, 115, 127
Sau96I	GGNCC	1 cut(s)	179
SchI	GAGTC	3 cut(s)	173, 242, 471
ScrFI	CCNGG	3 cut(s)	65, 66, 431
SetI	ASST	7 cut(s)	51, 279, 400, 414, 606, 687, 693
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	734
SinI	GGWCC	1 cut(s)	179
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	672, 753
SsiI	CCGC	2 cut(s)	27, 146
SspMI	CTAG	5 cut(s)	96, 168, 195, 245, 666
StyD4I	CCNGG	3 cut(s)	63, 64, 429
TaaI	ACNGT	1 cut(s)	595
TaqI	TCGA	2 cut(s)	320, 646
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	2 cut(s)	672, 753
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	3 cut(s)	53, 582, 762
Tru9I	TTAA	3 cut(s)	53, 582, 762
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	188, 705
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	2 cut(s)	381, 665
TspGWI	ACGGA	1 cut(s)	223
TspMI	CCCGGG	1 cut(s)	64
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	179
XapI	RAATTY	1 cut(s)	672
XbaI	TCTAGA	1 cut(s)	665
XceI	RCATGY	3 cut(s)	91, 160, 175
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	5 cut(s)	96, 168, 195, 245, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.