Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005437

Physical Location & Seq

Genomic Coordinates Reverse (-)

20153548 .. 20157015

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G144400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTGGGATTTTCTGTTTCCAGAAGGATAAACACAACCAATATGCAGAGTGAAAGAGACATTAGAGATGGGGTTTCTCGGTCACGTGACTTGTTAGATAGTTTTCAGGGCTTTGGGTCCCGTAGAAGTATGTTTCCTAGCCTCTTTGGTGGAAGGGATCCATTTGACGATCCCTTCTTCAGTCGCCCGCCTGGTAGCATGTTCGAATCTAGCATTTTCGGTCCAAGTGCCGCTTCTAGTGGTACACCAGAGAATGGTAGAGCCAATGAATTATTAGTAGAAGAACTGAATTCTGATGATGAGGGAGGGGAACATAAAGTTACTGAGGATGGGAGAGATAACTGTGGAAAGCAATATGTTTCAAGCAAAGAACCAACTATTGAGCATCCGGATGATGTTGTGGATGATAGGAAAAGCAATGATGTGACTTGTAGAAATGACCGCAACAAGGTGGAAGGTGAACGGTCCCAGGGTCGTAGTTTCTCTGCCCAGACTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACTTCTACAAGAACCAGAAGGGCAGGCGGTGATGGTGTGGTGCTTGAGGAGAGCAAAGAAGCAGATAGAACAACTGGTCAAGCAACACACAGAATCTCGAGAGGACTTCATGATAAGGGTCATTCTGTTACAAGGAAGCTTAAGTCAGATGGAAAGGTGGATATGTTGCAAACTTTACACAATTTGAATGAAGATGAGCTTCCTGGCTTTGAAGAAGCATGGACTGGTAATGTTAAAGGACGCTTACCTGGTTGGAGAGGTGATTTTAATATGCATGGTAATGCTGGTTCAGGTAGCAGACAACAGAAGGGAAATGCAATTTGGGGAGCTGGGCTGCTTCCATCTGCCGAGCAAGCGCAAAGCGTAAGAGGAAATGGATCAGACAATGCAACCAGAGCTACCTCTGATGGGAGAACCAAAAGGGTGGTTAGAATCAACATAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

327

Amino Acids

35.7

Weight (kDa)

6.21

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45380 AT2G45380 AT2G45380 AT2G45380
fragaria_vesca	FvH4_7g11720 FvH4_7g11720 FvH4_7g11720 FvH4_7g11720
malus_domestica	MD02G1205300.v1.1 MD07G1121800.v1.1
prunus_persica	Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1
pyrus_communis	pycom02g16720 pycom07g10420
rosa_chinensis	RchiOBHm_Chr1g0350241
rosa_laevigata	RLG00000028497
rosa_multiflora	Rmu_sc0001037.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304960
rosa_rugosa	Rorug01G0210000 Rorug01G0210000 Rorug01G0210100
rosa_samantha	Rh1AG225200 Rh1BG193100 Rh1CG210000 Rh1DG221400
rosa_wichuraiana	Rw0G018810 Rw1G019360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	254
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	4 cut(s)	188, 231, 442, 561
AclWI	GGATC	4 cut(s)	152, 164, 165, 919
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	163
AcvI	CACGTG	1 cut(s)	86
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	254, 448, 942
AflII	CTTAAG	1 cut(s)	674
AgsI	TTSAA	3 cut(s)	363, 721, 746
AjnI	CCWGG	4 cut(s)	190, 468, 736, 781
AjuI	GAANNNNNNNTTGG	4 cut(s)	217, 249, 838, 870
AluBI	AGCT	4 cut(s)	673, 733, 863, 932
AluI	AGCT	4 cut(s)	673, 733, 863, 932
Alw26I	GTCTC	1 cut(s)	51
AlwI	GGATC	4 cut(s)	152, 164, 165, 919
Ama87I	CYCGRG	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	868
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	892
AspS9I	GGNCC	3 cut(s)	117, 221, 465
AsuHPI	GGTGA	3 cut(s)	470, 575, 806
AsuII	TTCGAA	1 cut(s)	204
AvaI	CYCGRG	1 cut(s)	631
AvaII	GGWCC	3 cut(s)	117, 221, 465
BamHI	GGATCC	1 cut(s)	157
BbrPI	CACGTG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	855
BccI	CCATC	7 cut(s)	62, 323, 515, 560, 677, 883, 935
BciT130I	CCWGG	4 cut(s)	192, 470, 738, 783
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	3 cut(s)	138, 210, 237
BfrI	CTTAAG	1 cut(s)	674
BisI	GCNGC	2 cut(s)	231, 869
BlsI	GCNGC	2 cut(s)	232, 870
Bme1390I	CCNGG	4 cut(s)	192, 470, 738, 783
Bme18I	GGWCC	3 cut(s)	117, 221, 465
BmeT110I	CYCGRG	1 cut(s)	631
BmgT120I	GGNCC	3 cut(s)	117, 221, 465
BmiI	GGNNCC	4 cut(s)	118, 119, 159, 467
BmrFI	CCNGG	4 cut(s)	192, 470, 738, 783
BmsI	GCATC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	468, 469
BsaWI	WCCGGW	1 cut(s)	388
Bsc4I	CCNNNNNNNGG	3 cut(s)	254, 448, 942
Bse1I	ACTGG	2 cut(s)	613, 763
Bse3DI	GCAATG	1 cut(s)	424
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	4 cut(s)	192, 470, 738, 783
BseDI	CCNNGG	2 cut(s)	468, 469
BseGI	GGATG	4 cut(s)	334, 385, 397, 409
BseLI	CCNNNNNNNGG	3 cut(s)	254, 448, 942
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	613, 763
BseRI	GAGGAG	1 cut(s)	596
BseXI	GCAGC	1 cut(s)	855
BseYI	CCCAGC	2 cut(s)	4, 863
BsiHKCI	CYCGRG	1 cut(s)	631
BsiSI	CCGG	1 cut(s)	389
BslFI	GGGAC	2 cut(s)	103, 451
BslI	CCNNNNNNNGG	3 cut(s)	254, 448, 942
BsmAI	GTCTC	1 cut(s)	51
BsmFI	GGGAC	2 cut(s)	103, 451
BsoBI	CYCGRG	1 cut(s)	631
Bsp119I	TTCGAA	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	157, 169, 911
BspACI	CCGC	4 cut(s)	188, 231, 442, 561
BspCNI	CTCAG	1 cut(s)	316
BspEI	TCCGGA	1 cut(s)	388
BspHI	TCATGA	1 cut(s)	643
BspLI	GGNNCC	4 cut(s)	118, 119, 159, 467
BspPI	GGATC	4 cut(s)	152, 164, 165, 919
BspT104I	TTCGAA	1 cut(s)	204
BspTI	CTTAAG	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	613, 763
BssECI	CCNNGG	2 cut(s)	468, 469
BssMI	GATC	3 cut(s)	157, 169, 911
Bst2UI	CCWGG	4 cut(s)	192, 470, 738, 783
Bst4CI	ACNGT	2 cut(s)	344, 465
BstAFI	CTTAAG	1 cut(s)	674
BstBAI	YACGTR	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	204
BstC8I	GCNNGC	3 cut(s)	188, 559, 888
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	334, 385, 397, 409
BstHHI	GCGC	1 cut(s)	892
BstKTI	GATC	3 cut(s)	160, 172, 914
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	3 cut(s)	157, 169, 911
BstMWI	GCNNNNNNNGC	2 cut(s)	887, 929
BstNI	CCWGG	4 cut(s)	192, 470, 738, 783
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	4 cut(s)	190, 468, 736, 781
BstV1I	GCAGC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	157
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	334, 385, 397, 409
Cac8I	GCNNGC	3 cut(s)	188, 559, 888
CciI	TCATGA	1 cut(s)	643
CfoI	GCGC	1 cut(s)	892
Cfr13I	GGNCC	3 cut(s)	117, 221, 465
CseI	GACGC	1 cut(s)	783
CsiI	ACCWGGT	1 cut(s)	781
Csp6I	GTAC	1 cut(s)	243
CviAII	CATG	4 cut(s)	199, 644, 753, 809
CviJI	RGCY	9 cut(s)	111, 141, 263, 673, 733, 741, 863, 868, 932
CviKI_1	RGCY	9 cut(s)	111, 141, 263, 673, 733, 741, 863, 868, 932
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	3 cut(s)	159, 171, 913
DpnII	GATC	3 cut(s)	157, 169, 911
Eco47I	GGWCC	3 cut(s)	117, 221, 465
Eco57I	CTGAAG	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	631
EcoO109I	RGGNCCY	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	4 cut(s)	190, 468, 736, 781
EcoT22I	ATGCAT	1 cut(s)	810
FaeI	CATG	4 cut(s)	202, 647, 756, 812
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 717, 749
FaqI	GGGAC	2 cut(s)	103, 451
FatI	CATG	4 cut(s)	198, 643, 752, 808
FauI	CCCGC	1 cut(s)	195
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	2 cut(s)	231, 869
FokI	GGATG	4 cut(s)	341, 372, 404, 416
Fsp4HI	GCNGC	2 cut(s)	231, 869
FspBI	CTAG	3 cut(s)	138, 210, 237
GlaI	GCGC	1 cut(s)	891
GluI	GCNGC	2 cut(s)	231, 869
GsaI	CCCAGC	2 cut(s)	8, 867
HapII	CCGG	1 cut(s)	389
HgaI	GACGC	1 cut(s)	783
HhaI	GCGC	1 cut(s)	892
Hin1II	CATG	4 cut(s)	202, 647, 756, 812
Hin6I	GCGC	1 cut(s)	890
HinP1I	GCGC	1 cut(s)	890
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	4 cut(s)	206, 501, 627, 966
HpaII	CCGG	1 cut(s)	389
HphI	GGTGA	3 cut(s)	470, 575, 806
Hpy166II	GTNNAC	2 cut(s)	245, 461
Hpy188I	TCNGA	4 cut(s)	295, 682, 916, 940
Hpy188III	TCNNGA	5 cut(s)	21, 389, 631, 633, 644
Hpy8I	GTNNAC	2 cut(s)	245, 461
HpyAV	CCTTC	6 cut(s)	18, 147, 184, 449, 546, 835
HpyCH4III	ACNGT	2 cut(s)	344, 465
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	6 cut(s)	46, 498, 703, 808, 851, 923
HpyF10VI	GCNNNNNNNGC	2 cut(s)	887, 929
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	1 cut(s)	85
Hsp92II	CATG	4 cut(s)	202, 647, 756, 812
HspAI	GCGC	1 cut(s)	890
KflI	GGGWCCC	1 cut(s)	117
Kpn2I	TCCGGA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	157, 169, 911
LmnI	GCTCC	2 cut(s)	524, 860
Lsp1109I	GCAGC	1 cut(s)	855
LweI	GCATC	1 cut(s)	394
MabI	ACCWGGT	1 cut(s)	781
MaeI	CTAG	3 cut(s)	138, 210, 237
MaeII	ACGT	1 cut(s)	85
MaeIII	GTNAC	6 cut(s)	81, 86, 319, 424, 502, 661
MalI	GATC	3 cut(s)	159, 171, 913
MboI	GATC	3 cut(s)	157, 169, 911
MboII	GAAGA	4 cut(s)	169, 293, 737, 758
MflI	RGATCY	1 cut(s)	157
MluCI	AATT	4 cut(s)	269, 289, 715, 852
MlyI	GAGTC	1 cut(s)	510
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	152, 295, 299, 319, 574, 629, 785, 896, 946
Mph1103I	ATGCAT	1 cut(s)	810
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	3 cut(s)	675, 768, 801
MslI	CAYNNNNRTG	2 cut(s)	390, 813
MspCI	CTTAAG	1 cut(s)	674
MspI	CCGG	1 cut(s)	389
MspR9I	CCNGG	4 cut(s)	192, 470, 738, 783
MvaI	CCWGG	4 cut(s)	192, 470, 738, 783
MwoI	GCNNNNNNNGC	2 cut(s)	887, 929
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	157, 169, 911
NlaIII	CATG	4 cut(s)	202, 647, 756, 812
NlaIV	GGNNCC	4 cut(s)	118, 119, 159, 467
NmeAIII	GCCGAG	1 cut(s)	907
NmuCI	GTSAC	4 cut(s)	81, 86, 424, 502
NsiI	ATGCAT	1 cut(s)	810
NspI	RCATGY	1 cut(s)	202
NspV	TTCGAA	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	631
PagI	TCATGA	1 cut(s)	643
PasI	CCCWGGG	1 cut(s)	469
PfeI	GAWTC	3 cut(s)	206, 627, 966
PflMI	CCANNNNNTGG	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	232, 870
PleI	GAGTC	1 cut(s)	509
PmaCI	CACGTG	1 cut(s)	86
PmlI	CACGTG	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	509
Ppu21I	YACGTR	1 cut(s)	86
PpuMI	RGGWCCY	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	117
Psp6I	CCWGG	4 cut(s)	190, 468, 736, 781
PspCI	CACGTG	1 cut(s)	86
PspFI	CCCAGC	2 cut(s)	4, 863
PspGI	CCWGG	4 cut(s)	190, 468, 736, 781
PspN4I	GGNNCC	4 cut(s)	118, 119, 159, 467
PspPI	GGNCC	3 cut(s)	117, 221, 465
PspPPI	RGGWCCY	1 cut(s)	117
PsrI	GAACNNNNNNTAC	2 cut(s)	805, 837
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
RseI	CAYNNNNRTG	2 cut(s)	390, 813
SaqAI	TTAA	3 cut(s)	675, 768, 801
SatI	GCNGC	2 cut(s)	231, 869
Sau3AI	GATC	3 cut(s)	157, 169, 911
Sau96I	GGNCC	3 cut(s)	117, 221, 465
SchI	GAGTC	1 cut(s)	510
ScrFI	CCNGG	4 cut(s)	192, 470, 738, 783
SexAI	ACCWGGT	1 cut(s)	781
SfaNI	GCATC	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	631
SfuI	TTCGAA	1 cut(s)	204
SinI	GGWCC	3 cut(s)	117, 221, 465
SlaI	CTCGAG	1 cut(s)	631
SmiMI	CAYNNNNRTG	2 cut(s)	390, 813
SmlI	CTYRAG	3 cut(s)	578, 631, 674
SmoI	CTYRAG	3 cut(s)	578, 631, 674
Sse9I	AATT	4 cut(s)	269, 289, 715, 852
SsiI	CCGC	4 cut(s)	188, 231, 442, 561
SspMI	CTAG	3 cut(s)	138, 210, 237
StyD4I	CCNGG	4 cut(s)	190, 468, 736, 781
TaaI	ACNGT	2 cut(s)	344, 465
TaiI	ACGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	204, 632
TaqII	GACCGA	2 cut(s)	69, 209
TasI	AATT	4 cut(s)	269, 289, 715, 852
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	3 cut(s)	206, 627, 966
Tru1I	TTAA	3 cut(s)	675, 768, 801
Tru9I	TTAA	3 cut(s)	675, 768, 801
TseFI	GTSAC	4 cut(s)	81, 86, 424, 502
TseI	GCWGC	1 cut(s)	868
Tsp45I	GTSAC	4 cut(s)	81, 86, 424, 502
TspDTI	ATGAA	3 cut(s)	282, 632, 738
Van91I	CCANNNNNTGG	1 cut(s)	254
Vha464I	CTTAAG	1 cut(s)	674
VpaK11BI	GGWCC	3 cut(s)	117, 221, 465
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	202
XhoI	CTCGAG	1 cut(s)	631
XspI	CTAG	3 cut(s)	138, 210, 237
Zsp2I	ATGCAT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.