FvH4_7g11720

Myelodysplasia-myeloid leukemia factor 1-interacting protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005437
Physical Location & Seq
Reverse (-)
10775476 .. 10778813
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g11720.t1

Sequence Viewer

Length: 915 bp
ATGCAAAGTGAAAAGCAAGGCAGACGAGGCTTCTCTCGCTCAGATGAGCTGTTAAATAGTTTCCCGGGGTTTGGATCCCGTAGGAGCATGTTGCCTAGCCTGTTTAGTGGAAGGGATCCATTTGATGATCCTTTCTTCAGTCGGCCGCTTGGAGACATGTTCGGGTCTAGCATGTTCGGTCCAAGTGCTGCTTCTAGTGGTGCACCACAGAGTGGTAGCGGTGGGGGAATCATAGTAGAAGAATTAAACTCTGATGATGAGGGAGAGGAAGATGAGGGTACTGTAGATGGGAGGGATAAGAGGAAAGAACGAGCCGTTTCAAGCAATGAGCCATCTGTTGAGCATCCGGATGATGATGATGATGATGATGTGGATGCAGAAGAGAAAGTCAAGAACATGAGTAAAAGAAGTGATTTCAACAAGGTACAAGGCACACAGCCCCAAGGTCGTAGTGTCTCTGTTCAGAGTTGCAGAGTTACATATGGTGGTATAGATGGTGCATATTACACTTCTACAAGAAACAGAAGGGCAGGCAATGATGGGGTGATGATTGAGGAGACCAAAGAAGCAGATAAGACCACTGGTCAAGCAACACATAAGATATCTAGAGGAATTCATGATAAGGGTCATTCTGTCACAAGGAAGCTTAATGCAGATGGAAAGGTGGATATGTTGCAAACTCTACACAATTTGAATGAAGATGAGCTTGCTGGTTTTGAAGAAGCTTGGGATGGTAATGTTAAACTTGATGTACCTGGCTGGAAAGAATTTGGTAACCAAGGTGAACCGAAGGGCAATGCACCTTGGAACACTTGGCTCCTTCCATCTTCAGAGCAACCACAAAGCTCCAGAGGGGTATCCGGGGCTACCTCTGATGGGAGAACCAAAAAGGTTGTTAGAATAAATATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05202 map05202
Pfam Domains
Protein Families
Mlf1IP

Protein Analysis

305

Amino Acids

33.15

Weight (kDa)

4.95

Isoelectric Point (pI)

57.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlf1IP PF10248 97 - 244 3.2e-20 Myelodysplasia-myeloid leukemia factor 1-interacting protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 2 cut(s) 146, 219
AclWI GGATC 5 cut(s) 69, 82, 110, 122, 123
AcoI YGGCCR 1 cut(s) 143
AcsI RAATTY 2 cut(s) 612, 767
AcuI CTGAAG 2 cut(s) 121, 813
AdeI CACNNNGTG 1 cut(s) 212
AfaI GTAC 3 cut(s) 280, 426, 753
AfiI CCNNNNNNNGG 3 cut(s) 71, 212, 876
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 4 cut(s) 321, 418, 694, 719
AhdI GACNNNNNGTC 1 cut(s) 582
AjnI CCWGG 1 cut(s) 754
AjuI GAANNNNNNNTTGG 2 cut(s) 175, 207
AluBI AGCT 5 cut(s) 49, 646, 706, 725, 846
AluI AGCT 5 cut(s) 49, 646, 706, 725, 846
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 3 cut(s) 147, 460, 551
Alw44I GTGCAC 1 cut(s) 201
AlwI GGATC 5 cut(s) 69, 82, 110, 122, 123
Ama87I CYCGRG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 143
ApaLI GTGCAC 1 cut(s) 201
ApeKI GCWGC 1 cut(s) 188
ApoI RAATTY 2 cut(s) 612, 767
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 3 cut(s) 65, 66, 862
AsuHPI GGTGA 2 cut(s) 556, 794
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 1 cut(s) 179
BaeGI GKGCMC 1 cut(s) 205
BamHI GGATCC 2 cut(s) 74, 115
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 175
BccI CCATC 8 cut(s) 281, 340, 488, 533, 650, 725, 832, 869
BceAI ACGGC 1 cut(s) 299
BciT130I CCWGG 1 cut(s) 756
BciVI GTATCC 1 cut(s) 868
BcnI CCSGG 3 cut(s) 65, 66, 862
BcoDI GTCTC 3 cut(s) 147, 460, 551
BfaI CTAG 4 cut(s) 96, 168, 195, 606
BfmI CTRYAG 1 cut(s) 282
BfuI GTATCC 1 cut(s) 868
BisI GCNGC 2 cut(s) 146, 189
BlsI GCNGC 2 cut(s) 147, 190
Bme1390I CCNGG 4 cut(s) 65, 66, 756, 862
Bme18I GGWCC 1 cut(s) 179
BmeRI GACNNNNNGTC 1 cut(s) 582
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 3 cut(s) 76, 117, 818
BmrFI CCNGG 4 cut(s) 65, 66, 756, 862
BmsI GCATC 2 cut(s) 352, 364
BpmI CTGGAG 1 cut(s) 832
BpuMI CCSGG 3 cut(s) 65, 66, 862
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 6 cut(s) 64, 65, 442, 778, 803, 861
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 212, 876
Bse1I ACTGG 1 cut(s) 586
Bse3DI GCAATG 3 cut(s) 331, 541, 802
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 1 cut(s) 756
BseDI CCNNGG 6 cut(s) 64, 65, 442, 778, 803, 861
BseGI GGATG 4 cut(s) 343, 355, 379, 736
BseLI CCNNNNNNNGG 3 cut(s) 71, 212, 876
BseMI GCAATG 3 cut(s) 331, 541, 802
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 205
BseX3I CGGCCG 1 cut(s) 143
BseXI GCAGC 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 145
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 205
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 65, 347, 861
BslI CCNNNNNNNGG 3 cut(s) 71, 212, 876
BsmAI GTCTC 3 cut(s) 147, 460, 551
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 346
Bsp143I GATC 3 cut(s) 74, 115, 127
BspACI CCGC 2 cut(s) 146, 219
BspANI GGCC 1 cut(s) 145
BspCNI CTCAG 1 cut(s) 53
BspEI TCCGGA 1 cut(s) 346
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 3 cut(s) 76, 117, 818
BspPI GGATC 5 cut(s) 69, 82, 110, 122, 123
BspTNI GGTCTC 1 cut(s) 551
BsrDI GCAATG 3 cut(s) 331, 541, 802
BsrI ACTGG 1 cut(s) 586
BssECI CCNNGG 6 cut(s) 64, 65, 442, 778, 803, 861
BssMI GATC 3 cut(s) 74, 115, 127
BssT1I CCWWGG 3 cut(s) 442, 778, 803
Bst2UI CCWGG 1 cut(s) 756
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 532, 708
BstDEI CTNAG 1 cut(s) 40
BstEII GGTNACC 1 cut(s) 773
BstF5I GGATG 4 cut(s) 343, 355, 379, 736
BstKTI GATC 3 cut(s) 77, 118, 130
BstMAI GTCTC 3 cut(s) 147, 460, 551
BstMBI GATC 3 cut(s) 74, 115, 127
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 2 cut(s) 27, 36
BstNI CCWGG 1 cut(s) 756
BstNSI RCATGY 3 cut(s) 91, 160, 175
BstPI GGTNACC 1 cut(s) 773
BstSCI CCNGG 4 cut(s) 63, 64, 754, 860
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 175
BstX2I RGATCY 2 cut(s) 74, 115
BstYI RGATCY 2 cut(s) 74, 115
BstZI CGGCCG 1 cut(s) 143
BsuI GTATCC 1 cut(s) 868
BsuRI GGCC 1 cut(s) 145
BtsCI GGATG 4 cut(s) 343, 355, 379, 736
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 532, 708
CciI TCATGA 1 cut(s) 616
Cfr13I GGNCC 1 cut(s) 179
Cfr9I CCCGGG 1 cut(s) 64
Csp6I GTAC 3 cut(s) 279, 425, 752
CviAII CATG 5 cut(s) 88, 157, 172, 397, 617
CviQI GTAC 3 cut(s) 279, 425, 752
DdeI CTNAG 1 cut(s) 40
DpnI GATC 3 cut(s) 76, 117, 129
DpnII GATC 3 cut(s) 74, 115, 127
DraIII CACNNNGTG 1 cut(s) 212
DriI GACNNNNNGTC 1 cut(s) 582
EaeI YGGCCR 1 cut(s) 143
EagI CGGCCG 1 cut(s) 143
Eam1104I CTCTTC 1 cut(s) 375
Eam1105I GACNNNNNGTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 375
EclXI CGGCCG 1 cut(s) 143
Eco130I CCWWGG 3 cut(s) 442, 778, 803
Eco31I GGTCTC 1 cut(s) 551
Eco32I GATATC 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 143
Eco57I CTGAAG 2 cut(s) 121, 813
Eco88I CYCGRG 1 cut(s) 64
Eco91I GGTNACC 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 612
EcoRII CCWGG 1 cut(s) 754
EcoRV GATATC 1 cut(s) 603
EcoT14I CCWWGG 3 cut(s) 442, 778, 803
ErhI CCWWGG 3 cut(s) 442, 778, 803
FaeI CATG 5 cut(s) 91, 160, 175, 400, 620
FalI AAGNNNNNCTT 4 cut(s) 175, 207, 690, 722
FatI CATG 5 cut(s) 87, 156, 171, 396, 616
FauNDI CATATG 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 146, 189
FokI GGATG 4 cut(s) 330, 362, 386, 743
Fsp4HI GCNGC 2 cut(s) 146, 189
FspBI CTAG 4 cut(s) 96, 168, 195, 606
GluI GCNGC 2 cut(s) 146, 189
GsuI CTGGAG 1 cut(s) 832
HaeIII GGCC 1 cut(s) 145
HapII CCGG 3 cut(s) 65, 347, 861
Hin1II CATG 5 cut(s) 91, 160, 175, 400, 620
HindIII AAGCTT 2 cut(s) 644, 723
HinfI GANTC 1 cut(s) 228
HpaII CCGG 3 cut(s) 65, 347, 861
HphI GGTGA 2 cut(s) 556, 794
Hpy166II GTNNAC 2 cut(s) 203, 785
Hpy188I TCNGA 5 cut(s) 43, 253, 465, 832, 874
Hpy188III TCNNGA 5 cut(s) 347, 391, 606, 617, 849
Hpy8I GTNNAC 2 cut(s) 203, 785
HpyAV CCTTC 4 cut(s) 105, 519, 784, 830
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 8 cut(s) 4, 203, 377, 471, 500, 653, 676, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 36
HpyF3I CTNAG 1 cut(s) 40
Hsp92II CATG 5 cut(s) 91, 160, 175, 400, 620
Kpn2I TCCGGA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 74, 115, 127
LmnI GCTCC 3 cut(s) 84, 822, 851
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 2 cut(s) 352, 364
MaeI CTAG 4 cut(s) 96, 168, 195, 606
MaeIII GTNAC 3 cut(s) 475, 634, 773
MalI GATC 3 cut(s) 76, 117, 129
MboI GATC 3 cut(s) 74, 115, 127
MboII GAAGA 7 cut(s) 127, 251, 281, 392, 710, 731, 819
MflI RGATCY 2 cut(s) 74, 115
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 4 cut(s) 242, 612, 688, 767
MroI TCCGGA 1 cut(s) 346
MseI TTAA 4 cut(s) 53, 245, 648, 741
MslI CAYNNNNRTG 1 cut(s) 348
MspI CCGG 3 cut(s) 65, 347, 861
MspR9I CCNGG 4 cut(s) 65, 66, 756, 862
MvaI CCWGG 1 cut(s) 756
MwoI GCNNNNNNNGC 2 cut(s) 27, 36
NciI CCSGG 3 cut(s) 65, 66, 862
NdeI CATATG 1 cut(s) 481
NdeII GATC 3 cut(s) 74, 115, 127
NlaIII CATG 5 cut(s) 91, 160, 175, 400, 620
NlaIV GGNNCC 3 cut(s) 76, 117, 818
NmuCI GTSAC 1 cut(s) 634
NspI RCATGY 3 cut(s) 91, 160, 175
PagI TCATGA 1 cut(s) 616
PciI ACATGT 1 cut(s) 156
PfeI GAWTC 1 cut(s) 228
PflMI CCANNNNNTGG 1 cut(s) 212
PkrI GCNGC 2 cut(s) 147, 190
PscI ACATGT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 754
PspEI GGTNACC 1 cut(s) 773
PspGI CCWGG 1 cut(s) 754
PspN4I GGNNCC 3 cut(s) 76, 117, 818
PspPI GGNCC 1 cut(s) 179
PsuI RGATCY 2 cut(s) 74, 115
RsaI GTAC 3 cut(s) 280, 426, 753
RsaNI GTAC 3 cut(s) 279, 425, 752
RseI CAYNNNNRTG 1 cut(s) 348
SaqAI TTAA 4 cut(s) 53, 245, 648, 741
SatI GCNGC 2 cut(s) 146, 189
Sau3AI GATC 3 cut(s) 74, 115, 127
Sau96I GGNCC 1 cut(s) 179
ScrFI CCNGG 4 cut(s) 65, 66, 756, 862
SduI GDGCHC 1 cut(s) 205
SfaNI GCATC 2 cut(s) 352, 364
SfcI CTRYAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 179
SmaI CCCGGG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 4 cut(s) 242, 612, 688, 767
SsiI CCGC 2 cut(s) 146, 219
SspMI CTAG 4 cut(s) 96, 168, 195, 606
StyD4I CCNGG 4 cut(s) 63, 64, 754, 860
StyI CCWWGG 3 cut(s) 442, 778, 803
TaaI ACNGT 1 cut(s) 283
TaqII GACCGA 1 cut(s) 167
TasI AATT 4 cut(s) 242, 612, 688, 767
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 1 cut(s) 228
Tru1I TTAA 4 cut(s) 53, 245, 648, 741
Tru9I TTAA 4 cut(s) 53, 245, 648, 741
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 1 cut(s) 188
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 605, 711
TspMI CCCGGG 1 cut(s) 64
TspRI CASTG 1 cut(s) 586
Van91I CCANNNNNTGG 1 cut(s) 212
VneI GTGCAC 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 179
XapI RAATTY 2 cut(s) 612, 767
XbaI TCTAGA 1 cut(s) 605
XceI RCATGY 3 cut(s) 91, 160, 175
XmaI CCCGGG 1 cut(s) 64
XspI CTAG 4 cut(s) 96, 168, 195, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.