Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001037.1

Orthogroup ID

OG0005437

Physical Location & Seq

Genomic Coordinates Forward (+)

44110 .. 46544

Gene Structure 2435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001037.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

atgcaaagcgaaaggcaaggcagacgcggtttctctcgctcagatgacctgttaaatagtttcccgggatttggatctcgtagaagcatgttgcctagcctctttagtggaagggatccatttgatgatcccttcttcagtcggccgcttggagacatgtttgagtctagcatgttccgtccaagtgctgcttctagtgatacaccaaagagtggtagagatgggggaatcatagtagaagaactagactctgatgatgatggagaggaagatgaggttactggagatgggagagataagaggaagcaacgaactgtgtcaagcgaagagccatctgttgagcatccggatgatgatgatatggatgaagagacaggcaagaacacgagtaaaagaggtgatttcaacaaggtgcaaggcacacagccccagggtcgtagtgcctctgttcagagttgcagagtcacatatggtggtgtagatggagcatattacacttctacaagaaccagaagggcaggcaatgatggcgtgaagattgaggagaccaaagaagcagataggacaactggtcgagcaacacataagatatctagaggaattcatgataagggtcattctgttacaaggaagcttaacccagatggaaaggtggatgtgttgcaaactttacacaatctgaatgaagatgagcttgctggttttgaagaagcatggaatggtaatgttaaggtggacttacctggctggaaagaatttgacaaccttggtgaacggaatgcaccttggagtgctgggctccttcaatcttcagagcaaccacaaagctccagagggtttagaccagggaatgtaaccgggactacctctgatgggagaaccaagaaggttgttagaatcaatatagagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

303

Amino Acids

33.44

Weight (kDa)

5.2

Isoelectric Point (pI)

56.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45380 AT2G45380 AT2G45380 AT2G45380
fragaria_vesca	FvH4_7g11720 FvH4_7g11720 FvH4_7g11720 FvH4_7g11720
malus_domestica	MD02G1205300.v1.1 MD07G1121800.v1.1
prunus_persica	Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1
pyrus_communis	pycom02g16720 pycom07g10420
rosa_chinensis	RchiOBHm_Chr1g0350241
rosa_laevigata	RLG00000028497
rosa_multiflora	Rmu_sc0001037.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304960
rosa_rugosa	Rorug01G0210000 Rorug01G0210000 Rorug01G0210100
rosa_samantha	Rh1AG225200 Rh1BG193100 Rh1CG210000 Rh1DG221400
rosa_wichuraiana	Rw0G018810 Rw1G019360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	2 cut(s)	27, 146
AclWI	GGATC	4 cut(s)	82, 110, 122, 123
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	600, 755
AcuI	CTGAAG	2 cut(s)	121, 795
AfiI	CCNNNNNNNGG	3 cut(s)	71, 212, 873
AflIII	ACRYGT	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	406, 707, 806
AhdI	GACNNNNNGTC	1 cut(s)	570
AjnI	CCWGG	3 cut(s)	429, 742, 844
AjuI	GAANNNNNNNTTGG	2 cut(s)	175, 207
AluBI	AGCT	3 cut(s)	634, 694, 828
AluI	AGCT	3 cut(s)	634, 694, 828
Alw26I	GTCTC	3 cut(s)	147, 365, 539
AlwI	GGATC	4 cut(s)	82, 110, 122, 123
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	600, 755
AsuC2I	CCSGG	3 cut(s)	65, 66, 859
AsuHPI	GGTGA	2 cut(s)	410, 782
AvaI	CYCGRG	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	115
BanII	GRGCYC	1 cut(s)	801
BauI	CACGAG	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	8 cut(s)	215, 254, 281, 340, 476, 521, 638, 866
BciT130I	CCWGG	3 cut(s)	431, 744, 846
BcnI	CCSGG	3 cut(s)	65, 66, 859
BcoDI	GTCTC	3 cut(s)	147, 365, 539
BfaI	CTAG	5 cut(s)	96, 168, 195, 245, 594
BisI	GCNGC	2 cut(s)	146, 189
BlsI	GCNGC	2 cut(s)	147, 190
Bme1390I	CCNGG	6 cut(s)	65, 66, 431, 744, 846, 859
BmeRI	GACNNNNNGTC	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	64
BmiI	GGNNCC	2 cut(s)	117, 800
BmrFI	CCNGG	6 cut(s)	65, 66, 431, 744, 846, 859
BmsI	GCATC	1 cut(s)	352
BpmI	CTGGAG	2 cut(s)	303, 814
BpuMI	CCSGG	3 cut(s)	65, 66, 859
BsaBI	GATNNNNATC	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	6 cut(s)	64, 429, 430, 766, 785, 845
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	3 cut(s)	71, 212, 873
Bse1I	ACTGG	2 cut(s)	286, 574
Bse3DI	GCAATG	1 cut(s)	529
Bse8I	GATNNNNATC	1 cut(s)	73
BseAI	TCCGGA	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	431, 744, 846
BseDI	CCNNGG	6 cut(s)	64, 429, 430, 766, 785, 845
BseGI	GGATG	4 cut(s)	343, 355, 370, 661
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	3 cut(s)	71, 212, 873
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	286, 574
BseRI	GAGGAG	1 cut(s)	557
BseX3I	CGGCCG	1 cut(s)	143
BseXI	GCAGC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	794
Bsh1236I	CGCG	1 cut(s)	27
Bsh1285I	CGRYCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	145
BsiEI	CGRYCG	1 cut(s)	146
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	3 cut(s)	65, 347, 858
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	3 cut(s)	71, 212, 873
BsmAI	GTCTC	3 cut(s)	147, 365, 539
BsmFI	GGGAC	1 cut(s)	874
BsmI	GAATGC	1 cut(s)	784
BsnI	GGCC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	539
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	801
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	3 cut(s)	74, 115, 127
BspACI	CCGC	2 cut(s)	27, 146
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	53
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	604
BspLI	GGNNCC	2 cut(s)	117, 800
BspPI	GGATC	4 cut(s)	82, 110, 122, 123
BspQI	GCTCTTC	1 cut(s)	321
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	529
BsrI	ACTGG	2 cut(s)	286, 574
BssECI	CCNNGG	6 cut(s)	64, 429, 430, 766, 785, 845
BssMI	GATC	3 cut(s)	74, 115, 127
BssSI	CACGAG	1 cut(s)	385
BssT1I	CCWWGG	2 cut(s)	766, 785
Bst2BI	CACGAG	1 cut(s)	385
Bst2UI	CCWGG	3 cut(s)	431, 744, 846
Bst4CI	ACNGT	1 cut(s)	316
Bst6I	CTCTTC	2 cut(s)	321, 363
BstC8I	GCNNGC	2 cut(s)	520, 696
BstDEI	CTNAG	1 cut(s)	40
BstF5I	GGATG	4 cut(s)	343, 355, 370, 661
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	3 cut(s)	77, 118, 130
BstMAI	GTCTC	3 cut(s)	147, 365, 539
BstMBI	GATC	3 cut(s)	74, 115, 127
BstMCI	CGRYCG	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	528
BstNI	CCWGG	3 cut(s)	431, 744, 846
BstNSI	RCATGY	3 cut(s)	91, 160, 175
BstSCI	CCNGG	6 cut(s)	63, 64, 429, 742, 844, 857
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	175
BstX2I	RGATCY	2 cut(s)	74, 115
BstYI	RGATCY	2 cut(s)	74, 115
BstZI	CGGCCG	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	4 cut(s)	343, 355, 370, 661
Cac8I	GCNNGC	2 cut(s)	520, 696
CciI	TCATGA	1 cut(s)	604
Cfr9I	CCCGGG	1 cut(s)	64
CseI	GACGC	1 cut(s)	33
CviAII	CATG	5 cut(s)	88, 157, 172, 605, 714
CviJI	RGCY	9 cut(s)	99, 145, 331, 427, 634, 694, 747, 799, 828
CviKI_1	RGCY	9 cut(s)	99, 145, 331, 427, 634, 694, 747, 799, 828
DdeI	CTNAG	1 cut(s)	40
DpnI	GATC	3 cut(s)	76, 117, 129
DpnII	GATC	3 cut(s)	74, 115, 127
DriI	GACNNNNNGTC	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	143
EagI	CGGCCG	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	321, 363
Eam1105I	GACNNNNNGTC	1 cut(s)	570
EarI	CTCTTC	2 cut(s)	321, 363
EclXI	CGGCCG	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	766, 785
Eco24I	GRGCYC	1 cut(s)	801
Eco31I	GGTCTC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	591
Eco52I	CGGCCG	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	121, 795
Eco88I	CYCGRG	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	600
EcoRII	CCWGG	3 cut(s)	429, 742, 844
EcoRV	GATATC	1 cut(s)	591
EcoT14I	CCWWGG	2 cut(s)	766, 785
EcoT38I	GRGCYC	1 cut(s)	801
ErhI	CCWWGG	2 cut(s)	766, 785
FaeI	CATG	5 cut(s)	91, 160, 175, 608, 717
FalI	AAGNNNNNCTT	6 cut(s)	175, 207, 678, 710, 722, 754
FaqI	GGGAC	1 cut(s)	874
FatI	CATG	5 cut(s)	87, 156, 171, 604, 713
FauNDI	CATATG	1 cut(s)	469
Fnu4HI	GCNGC	2 cut(s)	146, 189
FokI	GGATG	4 cut(s)	330, 362, 377, 668
FriOI	GRGCYC	1 cut(s)	801
Fsp4HI	GCNGC	2 cut(s)	146, 189
FspBI	CTAG	5 cut(s)	96, 168, 195, 245, 594
GluI	GCNGC	2 cut(s)	146, 189
GsaI	CCCAGC	1 cut(s)	798
GsuI	CTGGAG	2 cut(s)	303, 814
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	3 cut(s)	65, 347, 858
HgaI	GACGC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	91, 160, 175, 608, 717
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	5 cut(s)	164, 228, 248, 462, 897
HpaII	CCGG	3 cut(s)	65, 347, 858
HphI	GGTGA	2 cut(s)	410, 782
Hpy166II	GTNNAC	2 cut(s)	736, 773
Hpy188I	TCNGA	6 cut(s)	43, 253, 453, 681, 814, 871
Hpy188III	TCNNGA	4 cut(s)	347, 594, 605, 831
Hpy8I	GTNNAC	2 cut(s)	736, 773
HpyAV	CCTTC	5 cut(s)	105, 142, 507, 812, 880
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	4, 415, 459, 664, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	528
HpyF3I	CTNAG	1 cut(s)	40
Hsp92II	CATG	5 cut(s)	91, 160, 175, 608, 717
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	3 cut(s)	74, 115, 127
LguI	GCTCTTC	1 cut(s)	321
LmnI	GCTCC	3 cut(s)	485, 804, 833
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	5 cut(s)	96, 168, 195, 245, 594
MaeIII	GTNAC	4 cut(s)	277, 463, 622, 853
MalI	GATC	3 cut(s)	76, 117, 129
MboI	GATC	3 cut(s)	74, 115, 127
MboII	GAAGA	9 cut(s)	127, 251, 281, 338, 380, 547, 698, 719, 801
MflI	RGATCY	2 cut(s)	74, 115
MhlI	GDGCHC	1 cut(s)	801
MluCI	AATT	2 cut(s)	600, 755
MlyI	GAGTC	3 cut(s)	173, 242, 471
MroI	TCCGGA	1 cut(s)	346
MseI	TTAA	3 cut(s)	53, 636, 729
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	3 cut(s)	65, 347, 858
MspR9I	CCNGG	6 cut(s)	65, 66, 431, 744, 846, 859
Mva1269I	GAATGC	1 cut(s)	784
MvaI	CCWGG	3 cut(s)	431, 744, 846
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	528
NciI	CCSGG	3 cut(s)	65, 66, 859
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	3 cut(s)	74, 115, 127
NlaIII	CATG	5 cut(s)	91, 160, 175, 608, 717
NlaIV	GGNNCC	2 cut(s)	117, 800
NmuCI	GTSAC	1 cut(s)	463
NspI	RCATGY	3 cut(s)	91, 160, 175
PagI	TCATGA	1 cut(s)	604
PasI	CCCWGGG	1 cut(s)	430
PciI	ACATGT	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	321
PctI	GAATGC	1 cut(s)	784
PfeI	GAWTC	2 cut(s)	228, 897
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	147, 190
PleI	GAGTC	3 cut(s)	172, 242, 470
PpsI	GAGTC	3 cut(s)	172, 242, 470
PscI	ACATGT	1 cut(s)	156
Psp6I	CCWGG	3 cut(s)	429, 742, 844
PspFI	CCCAGC	1 cut(s)	794
PspGI	CCWGG	3 cut(s)	429, 742, 844
PspN4I	GGNNCC	2 cut(s)	117, 800
PsuI	RGATCY	2 cut(s)	74, 115
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	53, 636, 729
SatI	GCNGC	2 cut(s)	146, 189
Sau3AI	GATC	3 cut(s)	74, 115, 127
SchI	GAGTC	3 cut(s)	173, 242, 471
ScrFI	CCNGG	6 cut(s)	65, 66, 431, 744, 846, 859
SduI	GDGCHC	1 cut(s)	801
SfaNI	GCATC	1 cut(s)	352
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	348
Sse9I	AATT	2 cut(s)	600, 755
SsiI	CCGC	2 cut(s)	27, 146
SspMI	CTAG	5 cut(s)	96, 168, 195, 245, 594
StyD4I	CCNGG	6 cut(s)	63, 64, 429, 742, 844, 857
StyI	CCWWGG	2 cut(s)	766, 785
TaaI	ACNGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	574
TasI	AATT	2 cut(s)	600, 755
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	228, 897
Tru1I	TTAA	3 cut(s)	53, 636, 729
Tru9I	TTAA	3 cut(s)	53, 636, 729
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	3 cut(s)	381, 593, 699
TspGWI	ACGGA	2 cut(s)	167, 790
TspMI	CCCGGG	1 cut(s)	64
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	600, 755
XbaI	TCTAGA	1 cut(s)	593
XceI	RCATGY	3 cut(s)	91, 160, 175
XmaI	CCCGGG	1 cut(s)	64
XspI	CTAG	5 cut(s)	96, 168, 195, 245, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.