Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005437

Physical Location & Seq

Genomic Coordinates Forward (+)

13987636 .. 13989844

Gene Structure 2209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16720.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTTCGAGTCTAGTATTTTCGGTCCAAGTTCCGTTTCTAGTGATACACCGGAGAGTGGTAGAGCCAATGAAATATCAGTAGAAGAACTGAACTCTGATGATGAGGGAGGGGATGGTATAGTTACTGGGGATGAGAGAGATAACTGTGGAAAGCAATCTGTTTCGAGTAAAGAACCATCTGTTGAGCATCCAGATGATGTTTTGGACGAAGAGAGGAAAAGCAAGGATGTGACATATAGAAATGACCGCAATAAGGTGGAAGGCACTCGGTCGCAAGGCCGTGGTTTATCTTTTCAGACTTGCAGAGTCACATATGGTGGTGTAGATGGAGCATATTACACGTCTACGAGAACCAGAAGGGCGGGCAGTGATGGCGTGGTGCTTGAGGAGGCCAAAGAAGCAGATAAGACAACCGGTCAAGCAACACATAGAATCTCGAGAGGACTTTATGACAAGGGTCATTCTGTTACGAGGAAGCTCAAGTCAGATGGGAAGGTGGATATGTTGCAAACTTTACACAATTTAAATGAAGATGAGCTTCCTGGTTTTGAAGAAGCATGGACTGGTAATGTTGGAGGGCACTTGCCCAGCTGGAGACATGAATTTGATATGCATGGCAATACCAGTTCCTCCACTAGCAGAGAGCAGAATAGAGAGGTGATTTCGGGAGTGCGGCTTCTTCCATCTTCTGAGCACATGCAAAGCAGCAGAGGAATGAAATCAGACAACGCAACAAAGACTACCTCCGATGGGAGGACCAAAAGGGTTGTCAGAATCAATATAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko05202 map05202

Pfam Domains

Protein Families

Mlf1IP

Protein Analysis

263

Amino Acids

28.85

Weight (kDa)

5.48

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45380 AT2G45380 AT2G45380 AT2G45380
fragaria_vesca	FvH4_7g11720 FvH4_7g11720 FvH4_7g11720 FvH4_7g11720
malus_domestica	MD02G1205300.v1.1 MD07G1121800.v1.1
prunus_persica	Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1 Prupe.2G144400_v2.0.a1
pyrus_communis	pycom02g16720 pycom07g10420
rosa_chinensis	RchiOBHm_Chr1g0350241
rosa_laevigata	RLG00000028497
rosa_multiflora	Rmu_sc0001037.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304960
rosa_rugosa	Rorug01G0210000 Rorug01G0210000 Rorug01G0210100
rosa_samantha	Rh1AG225200 Rh1BG193100 Rh1CG210000 Rh1DG221400
rosa_wichuraiana	Rw0G018810 Rw1G019360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	344
AciI	CCGC	3 cut(s)	247, 362, 673
AcsI	RAATTY	1 cut(s)	602
AfiI	CCNNNNNNNGG	4 cut(s)	56, 253, 750, 753
AflIII	ACRYGT	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	551
AhdI	GACNNNNNGTC	1 cut(s)	414
AjiI	CACGTC	1 cut(s)	342
AjnI	CCWGG	1 cut(s)	541
AjuI	GAANNNNNNNTTGG	2 cut(s)	19, 51
AluBI	AGCT	3 cut(s)	478, 538, 591
AluI	AGCT	3 cut(s)	478, 538, 591
Alw21I	GWGCWC	1 cut(s)	696
Alw26I	GTCTC	1 cut(s)	589
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	2 cut(s)	277, 390
ApeKI	GCWGC	1 cut(s)	705
ApoI	RAATTY	1 cut(s)	602
ArsI	GACNNNNNNTTYG	2 cut(s)	753, 785
AsiGI	ACCGGT	1 cut(s)	413
AspS9I	GGNCC	2 cut(s)	23, 756
AsuHPI	GGTGA	1 cut(s)	670
AvaI	CYCGRG	1 cut(s)	436
AvaII	GGWCC	2 cut(s)	23, 756
BaeGI	GKGCMC	1 cut(s)	582
Bbv12I	GWGCWC	1 cut(s)	696
BbvI	GCAGC	1 cut(s)	717
BccI	CCATC	7 cut(s)	107, 184, 320, 365, 482, 691, 743
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	1 cut(s)	543
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	3 cut(s)	12, 39, 636
BisI	GCNGC	2 cut(s)	674, 706
BlsI	GCNGC	2 cut(s)	675, 707
Bme1390I	CCNGG	1 cut(s)	543
Bme18I	GGWCC	2 cut(s)	23, 756
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	342
BmgT120I	GGNCC	2 cut(s)	23, 756
BmrFI	CCNGG	1 cut(s)	543
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	196
BmuI	ACTGGG	1 cut(s)	135
BoxI	GACNNNNGTC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	613
BpuEI	CTTGAG	2 cut(s)	404, 464
BsaJI	CCNNGG	1 cut(s)	280
BsaWI	WCCGGW	2 cut(s)	49, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	56, 253, 750, 753
Bse118I	RCCGGY	1 cut(s)	413
Bse1I	ACTGG	3 cut(s)	130, 568, 624
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	4 cut(s)	118, 136, 187, 232
BseLI	CCNNNNNNNGG	4 cut(s)	56, 253, 750, 753
BseMII	CTCAG	1 cut(s)	681
BseNI	ACTGG	3 cut(s)	130, 568, 624
BseRI	GAGGAG	1 cut(s)	401
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	1 cut(s)	717
BseYI	CCCAGC	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	279, 392
BshTI	ACCGGT	1 cut(s)	413
BsiEI	CGRYCG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	696
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	2 cut(s)	50, 414
BslI	CCNNNNNNNGG	4 cut(s)	56, 253, 750, 753
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	279, 392
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	582, 696
BspACI	CCGC	3 cut(s)	247, 362, 673
BspANI	GGCC	2 cut(s)	279, 392
BspCNI	CTCAG	1 cut(s)	682
BsrFI	RCCGGY	1 cut(s)	413
BsrI	ACTGG	3 cut(s)	130, 568, 624
BssAI	RCCGGY	1 cut(s)	413
BssECI	CCNNGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	690
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	4 cut(s)	118, 136, 187, 232
BstMAI	GTCTC	1 cut(s)	589
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	2 cut(s)	372, 398
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	1 cut(s)	700
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	1 cut(s)	717
BsuRI	GGCC	2 cut(s)	279, 392
BtgI	CCRYGG	1 cut(s)	280
BtrI	CACGTC	1 cut(s)	342
BtsCI	GGATG	4 cut(s)	118, 136, 187, 232
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	1 cut(s)	364
Cfr10I	RCCGGY	1 cut(s)	413
Cfr13I	GGNCC	2 cut(s)	23, 756
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	4 cut(s)	558, 599, 614, 697
CviJI	RGCY	7 cut(s)	65, 279, 392, 478, 538, 591, 676
CviKI_1	RGCY	7 cut(s)	65, 279, 392, 478, 538, 591, 676
DdeI	CTNAG	1 cut(s)	690
DraI	TTTAAA	1 cut(s)	525
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	204
Eco47I	GGWCC	2 cut(s)	23, 756
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	541
EcoT22I	ATGCAT	1 cut(s)	615
FaeI	CATG	4 cut(s)	561, 602, 617, 700
FalI	AAGNNNNNCTT	2 cut(s)	522, 554
FatI	CATG	4 cut(s)	557, 598, 613, 696
FauI	CCCGC	1 cut(s)	355
FauNDI	CATATG	1 cut(s)	313
FblI	GTMKAC	1 cut(s)	344
Fnu4HI	GCNGC	2 cut(s)	674, 706
FokI	GGATG	4 cut(s)	125, 143, 174, 239
Fsp4HI	GCNGC	2 cut(s)	674, 706
FspBI	CTAG	3 cut(s)	12, 39, 636
GluI	GCNGC	2 cut(s)	674, 706
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	279, 392
HapII	CCGG	2 cut(s)	50, 414
Hin1II	CATG	4 cut(s)	561, 602, 617, 700
HinfI	GANTC	4 cut(s)	8, 306, 432, 774
HpaII	CCGG	2 cut(s)	50, 414
HphI	GGTGA	1 cut(s)	670
Hpy166II	GTNNAC	1 cut(s)	345
Hpy188I	TCNGA	7 cut(s)	97, 297, 487, 691, 724, 748, 773
Hpy188III	TCNNGA	4 cut(s)	191, 436, 438, 666
Hpy8I	GTNNAC	1 cut(s)	345
HpyAV	CCTTC	3 cut(s)	254, 351, 487
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	4 cut(s)	303, 508, 613, 700
HpyF10VI	GCNNNNNNNGC	2 cut(s)	372, 398
HpyF3I	CTNAG	1 cut(s)	690
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	4 cut(s)	561, 602, 617, 700
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	1 cut(s)	717
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	3 cut(s)	12, 39, 636
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	4 cut(s)	121, 229, 307, 466
MboII	GAAGA	6 cut(s)	95, 221, 542, 563, 671, 678
MhlI	GDGCHC	2 cut(s)	582, 696
MluCI	AATT	2 cut(s)	520, 602
MlyI	GAGTC	2 cut(s)	17, 315
MmeI	TCCRAC	1 cut(s)	553
Mph1103I	ATGCAT	1 cut(s)	615
MseI	TTAA	1 cut(s)	524
MslI	CAYNNNNRTG	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	591
MspI	CCGG	2 cut(s)	50, 414
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
MwoI	GCNNNNNNNGC	2 cut(s)	372, 398
NdeI	CATATG	1 cut(s)	313
NlaIII	CATG	4 cut(s)	561, 602, 617, 700
NmuCI	GTSAC	2 cut(s)	229, 307
NsiI	ATGCAT	1 cut(s)	615
NspI	RCATGY	1 cut(s)	700
PaeR7I	CTCGAG	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	432, 774
PinAI	ACCGGT	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	675, 707
PleI	GAGTC	2 cut(s)	16, 314
PpsI	GAGTC	2 cut(s)	16, 314
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	541
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	23, 756
PvuII	CAGCTG	1 cut(s)	591
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	524
SatI	GCNGC	2 cut(s)	674, 706
Sau96I	GGNCC	2 cut(s)	23, 756
SchI	GAGTC	2 cut(s)	17, 315
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	582, 696
SetI	ASST	8 cut(s)	258, 344, 480, 498, 540, 593, 660, 746
SfaNI	GCATC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	436
SinI	GGWCC	2 cut(s)	23, 756
SlaI	CTCGAG	1 cut(s)	436
SmiI	ATTTAAAT	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	383, 436, 479
SmoI	CTYRAG	3 cut(s)	383, 436, 479
Sse9I	AATT	2 cut(s)	520, 602
SsiI	CCGC	3 cut(s)	247, 362, 673
SspMI	CTAG	3 cut(s)	12, 39, 636
StyD4I	CCNGG	1 cut(s)	541
SwaI	ATTTAAAT	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	146
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	3 cut(s)	6, 164, 437
TaqII	GACCGA	2 cut(s)	11, 258
TasI	AATT	2 cut(s)	520, 602
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	2 cut(s)	432, 774
Tru1I	TTAA	1 cut(s)	524
Tru9I	TTAA	1 cut(s)	524
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	2 cut(s)	229, 307
TseI	GCWGC	1 cut(s)	705
Tsp45I	GTSAC	2 cut(s)	229, 307
TspDTI	ATGAA	4 cut(s)	84, 543, 615, 731
TspGWI	ACGGA	1 cut(s)	22
TspRI	CASTG	1 cut(s)	373
VpaK11BI	GGWCC	2 cut(s)	23, 756
XapI	RAATTY	1 cut(s)	602
XceI	RCATGY	1 cut(s)	700
XhoI	CTCGAG	1 cut(s)	436
XmiI	GTMKAC	1 cut(s)	344
XspI	CTAG	3 cut(s)	12, 39, 636
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.