Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

18823167 .. 18825763

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAAGCTTATAAGCAATGGGTTTGGAGAAATAGAGAGTATGTACAATCCTTTGGATCCTTTGCCAACGGATTGACATGGCTGCTTCCTGAGAAGTTTTCTGCTTCAGAGATTGGACCAGAAGCAGTAACGGCTTTTTTGGGCATATTCTCAACGATAAATGAACACATAATTGAAAATGCTCCAACACCTCGTGGCCATGTTGGATCTTCCGGGAATGATCCATCCCTTTCTTATCCACTACTCATCGCCATCCTCAAGGATTTGGAAACTGTTGTGGAAGTGGCAGCTGAACACTTCTATGGAGACAAAAAATGGAACTACATTATTCTCACTGAAGCTATGAAGGCTGTCATTAGGTTAGCCTTGTTCCGGAATAGTGGGTATAAGATGCTTCTTCAAGGAGGGGAAACACCTAATGAGGAGAAAGATTCTAACCAATCCGAGTCGCAAAATAGAGCTGGTAATTCGGGTAGAAATCTCGGGCCTCATGGTCTTGGAAACCAAAATCATCATAATCCATGGAACTTGGAAGGACGGGCGATGTCTGCTTTAAGTTCATTTGGTCAGAATGCAAGAACAACAACATCTTCTACCCCCGGTTGGTCTCGAAGAATTCAACATCAGCAAGCAGTTATAGAGCCTCCAATGATCAAGGAGAGGCGAAGAACGATGTCCGAGCTACTTACTGAGAAGGGTGTTAATGGAGCGTTGTTTGCGATTGGTGAGGTTCTTTACATAACGAGACCGCTCATTTACGTTCTTTTCATCAGAAAATATGGAGTCCGATCTTGGATTCCTTGGGCTATATCGCTTTCTGTGGACACACTGGGGATGGGTCTTCTTGCAAATTCGAAGTGGTGGGGAGAGAAGAGCAAGCAAGTCCATTTCTCAGGACCTGAAAAGGATGAGCTGAGGAGACGAAAACTGATATGGGCATTGTACCTCATGAGAGATCCATTCTTCACCAAGTACACAAGGCAGAAGCTGGAAAGCTCTCAAAAGAAGCTGGAACTAATTCCATTGATCGGATTCCTCACAGAGAAAATTGTGGAGCTTTTGGAGGGAGCTCAGTCACGGTACACTTACATATCGGGATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

367

Amino Acids

41.61

Weight (kDa)

9.41

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	2 - 358	2.2e-94	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AccBSI	CCGCTC	1 cut(s)	751
AccIII	TCCGGA	1 cut(s)	372
AciI	CCGC	1 cut(s)	749
AclWI	GGATC	5 cut(s)	51, 64, 214, 215, 950
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	2 cut(s)	615, 850
AcuI	CTGAAG	2 cut(s)	90, 357
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	4 cut(s)	45, 944, 974, 1082
AfiI	CCNNNNNNNGG	3 cut(s)	372, 603, 1028
AgsI	TTSAA	3 cut(s)	176, 401, 620
Alw21I	GWGCWC	1 cut(s)	1072
Alw26I	GTCTC	4 cut(s)	300, 612, 739, 913
AlwI	GGATC	5 cut(s)	51, 64, 214, 215, 950
AlwNI	CAGNNNCTG	2 cut(s)	899, 988
Ama87I	CYCGRG	1 cut(s)	482
Aor13HI	TCCGGA	1 cut(s)	372
AoxI	GGCC	2 cut(s)	196, 485
ApeKI	GCWGC	2 cut(s)	82, 287
ApoI	RAATTY	2 cut(s)	615, 850
Asp700I	GAANNNNTTC	1 cut(s)	1017
AspS9I	GGNCC	3 cut(s)	116, 485, 896
AsuC2I	CCSGG	2 cut(s)	214, 600
AsuHPI	GGTGA	2 cut(s)	737, 958
AsuII	TTCGAA	1 cut(s)	854
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	116, 896
BalI	TGGCCA	1 cut(s)	198
BamHI	GGATCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	1072
BauI	CACGAG	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	833
Bbv12I	GWGCWC	1 cut(s)	1072
BbvCI	CCTCAGC	1 cut(s)	914
BbvI	GCAGC	2 cut(s)	69, 299
BccI	CCATC	3 cut(s)	232, 260, 829
BceAI	ACGGC	1 cut(s)	147
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	2 cut(s)	214, 600
BcoDI	GTCTC	4 cut(s)	300, 612, 739, 913
BisI	GCNGC	2 cut(s)	83, 288
BlsI	GCNGC	2 cut(s)	84, 289
Bme1390I	CCNGG	2 cut(s)	214, 600
Bme18I	GGWCC	2 cut(s)	116, 896
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	3 cut(s)	116, 485, 896
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	214, 600
BmrI	ACTGGG	1 cut(s)	839
BmsI	GCATC	1 cut(s)	381
BmuI	ACTGGG	1 cut(s)	839
BpiI	GAAGAC	1 cut(s)	833
Bpu10I	CCTNAGC	1 cut(s)	914
Bpu14I	TTCGAA	1 cut(s)	854
BpuEI	CTTGAG	1 cut(s)	242
BpuMI	CCSGG	2 cut(s)	214, 600
BsaI	GGTCTC	2 cut(s)	612, 739
BsaJI	CCNNGG	3 cut(s)	521, 598, 800
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	372, 603, 1028
Bse1I	ACTGG	1 cut(s)	834
Bse3DI	GCAATG	1 cut(s)	23
BseAI	TCCGGA	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	521, 598, 800
BseGI	GGATG	4 cut(s)	224, 252, 840, 913
BseLI	CCNNNNNNNGG	3 cut(s)	372, 603, 1028
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	5 cut(s)	81, 681, 905, 906, 1085
BseNI	ACTGG	1 cut(s)	834
BseRI	GAGGAG	2 cut(s)	437, 931
BseXI	GCAGC	2 cut(s)	69, 299
BshFI	GGCC	2 cut(s)	198, 487
BsiHKAI	GWGCWC	1 cut(s)	1072
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	213, 373, 600
BslI	CCNNNNNNNGG	3 cut(s)	372, 603, 1028
BsmAI	GTCTC	4 cut(s)	300, 612, 739, 913
BsmBI	CGTCTC	1 cut(s)	913
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	2 cut(s)	198, 487
Bso31I	GGTCTC	2 cut(s)	612, 739
BsoBI	CYCGRG	1 cut(s)	482
Bsp119I	TTCGAA	1 cut(s)	854
Bsp1286I	GDGCHC	1 cut(s)	1072
Bsp13I	TCCGGA	1 cut(s)	372
Bsp1407I	TGTACA	1 cut(s)	43
Bsp143I	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
Bsp19I	CCATGG	1 cut(s)	521
BspACI	CCGC	1 cut(s)	749
BspANI	GGCC	2 cut(s)	198, 487
BspCNI	CTCAG	5 cut(s)	82, 682, 905, 906, 1084
BspEI	TCCGGA	1 cut(s)	372
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	5 cut(s)	51, 64, 214, 215, 950
BspQI	GCTCTTC	1 cut(s)	866
BspT104I	TTCGAA	1 cut(s)	854
BspTNI	GGTCTC	2 cut(s)	612, 739
BsrBI	CCGCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	834
BssECI	CCNNGG	3 cut(s)	521, 598, 800
BssMI	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
BssSI	CACGAG	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	521, 800
Bst2BI	CACGAG	1 cut(s)	192
Bst4CI	ACNGT	2 cut(s)	274, 1080
Bst6I	CTCTTC	1 cut(s)	866
BstAUI	TGTACA	1 cut(s)	43
BstBI	TTCGAA	1 cut(s)	854
BstC8I	GCNNGC	2 cut(s)	630, 878
BstDEI	CTNAG	5 cut(s)	90, 690, 892, 914, 1071
BstDSI	CCRYGG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	224, 252, 840, 913
BstKTI	GATC	8 cut(s)	59, 209, 223, 654, 791, 958, 1029, 1100
BstMAI	GTCTC	4 cut(s)	300, 612, 739, 913
BstMBI	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
BstMWI	GCNNNNNNNGC	4 cut(s)	131, 347, 548, 716
BstSCI	CCNGG	2 cut(s)	212, 598
BstV1I	GCAGC	2 cut(s)	69, 299
BstV2I	GAAGAC	1 cut(s)	833
BstX2I	RGATCY	3 cut(s)	56, 206, 955
BstYI	RGATCY	3 cut(s)	56, 206, 955
BsuRI	GGCC	2 cut(s)	198, 487
BtgI	CCRYGG	1 cut(s)	521
BtgZI	GCGATG	2 cut(s)	232, 557
BtsCI	GGATG	4 cut(s)	224, 252, 840, 913
BtsIMutI	CAGTG	2 cut(s)	333, 827
Cac8I	GCNNGC	2 cut(s)	630, 878
CaiI	CAGNNNCTG	2 cut(s)	899, 988
CciI	TCATGA	1 cut(s)	948
Cfr13I	GGNCC	3 cut(s)	116, 485, 896
Csp6I	GTAC	4 cut(s)	44, 943, 973, 1081
CviAII	CATG	5 cut(s)	78, 200, 491, 522, 949
CviQI	GTAC	4 cut(s)	44, 943, 973, 1081
DdeI	CTNAG	5 cut(s)	90, 690, 892, 914, 1071
DpnI	GATC	8 cut(s)	58, 208, 222, 653, 790, 957, 1028, 1099
DpnII	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
DraIII	CACNNNGTG	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	866
EarI	CTCTTC	1 cut(s)	866
Ecl136II	GAGCTC	1 cut(s)	1070
Eco130I	CCWWGG	2 cut(s)	521, 800
Eco24I	GRGCYC	1 cut(s)	1072
Eco31I	GGTCTC	2 cut(s)	612, 739
Eco47I	GGWCC	2 cut(s)	116, 896
Eco53kI	GAGCTC	1 cut(s)	1070
Eco57I	CTGAAG	2 cut(s)	90, 357
Eco88I	CYCGRG	1 cut(s)	482
EcoICRI	GAGCTC	1 cut(s)	1070
EcoO109I	RGGNCCY	1 cut(s)	896
EcoRI	GAATTC	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	521, 800
EcoT38I	GRGCYC	1 cut(s)	1072
ErhI	CCWWGG	2 cut(s)	521, 800
Esp3I	CGTCTC	1 cut(s)	913
FaeI	CATG	5 cut(s)	81, 203, 494, 525, 952
FatI	CATG	5 cut(s)	77, 199, 490, 521, 948
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	2 cut(s)	83, 288
FokI	GGATG	4 cut(s)	211, 239, 847, 920
FriOI	GRGCYC	1 cut(s)	1072
Fsp4HI	GCNGC	2 cut(s)	83, 288
GluI	GCNGC	2 cut(s)	83, 288
HaeIII	GGCC	2 cut(s)	198, 487
HapII	CCGG	3 cut(s)	213, 373, 600
Hin1II	CATG	5 cut(s)	81, 203, 494, 525, 952
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	5 cut(s)	431, 446, 783, 796, 1032
HpaII	CCGG	3 cut(s)	213, 373, 600
HphI	GGTGA	2 cut(s)	737, 958
Hpy166II	GTNNAC	3 cut(s)	823, 975, 1083
Hpy188I	TCNGA	7 cut(s)	109, 445, 570, 679, 773, 788, 1031
Hpy188III	TCNNGA	7 cut(s)	89, 373, 609, 894, 949, 1095, 1101
Hpy8I	GTNNAC	3 cut(s)	823, 975, 1083
HpyAV	CCTTC	3 cut(s)	340, 527, 688
HpyCH4III	ACNGT	2 cut(s)	274, 1080
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	2 cut(s)	575, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	131, 347, 548, 716
HpyF3I	CTNAG	5 cut(s)	90, 690, 892, 914, 1071
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	5 cut(s)	81, 203, 494, 525, 952
Kpn2I	TCCGGA	1 cut(s)	372
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
LguI	GCTCTTC	1 cut(s)	866
LmnI	GCTCC	4 cut(s)	187, 707, 1054, 1067
Lsp1109I	GCAGC	2 cut(s)	69, 299
LweI	GCATC	1 cut(s)	381
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	2 cut(s)	127, 1074
MalI	GATC	8 cut(s)	58, 208, 222, 653, 790, 957, 1028, 1099
MbiI	CCGCTC	1 cut(s)	751
MboI	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
MboII	GAAGA	8 cut(s)	201, 389, 582, 624, 678, 833, 883, 955
MflI	RGATCY	3 cut(s)	56, 206, 955
MhlI	GDGCHC	1 cut(s)	1072
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	6 cut(s)	171, 466, 615, 850, 1017, 1047
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	2 cut(s)	455, 792
MmeI	TCCRAC	2 cut(s)	184, 209
Mox20I	TGGCCA	1 cut(s)	198
MroI	TCCGGA	1 cut(s)	372
MroXI	GAANNNNTTC	1 cut(s)	1017
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	2 cut(s)	554, 702
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	213, 373, 600
MspR9I	CCNGG	2 cut(s)	214, 600
Mva1269I	GAATGC	1 cut(s)	577
MwoI	GCNNNNNNNGC	4 cut(s)	131, 347, 548, 716
NciI	CCSGG	2 cut(s)	214, 600
NcoI	CCATGG	1 cut(s)	521
NdeII	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
NlaIII	CATG	5 cut(s)	81, 203, 494, 525, 952
NlaIV	GGNNCC	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	1074
NspV	TTCGAA	1 cut(s)	854
PagI	TCATGA	1 cut(s)	948
PciSI	GCTCTTC	1 cut(s)	866
PctI	GAATGC	1 cut(s)	577
PdmI	GAANNNNTTC	1 cut(s)	1017
PfeI	GAWTC	3 cut(s)	431, 796, 1032
PfoI	TCCNGGA	1 cut(s)	212
PkrI	GCNGC	2 cut(s)	84, 289
PleI	GAGTC	2 cut(s)	454, 791
PpsI	GAGTC	2 cut(s)	454, 791
PpuMI	RGGWCCY	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	1072
Psp5II	RGGWCCY	1 cut(s)	896
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	3 cut(s)	116, 485, 896
PspPPI	RGGWCCY	1 cut(s)	896
PstNI	CAGNNNCTG	2 cut(s)	899, 988
PsuI	RGATCY	3 cut(s)	56, 206, 955
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	4 cut(s)	45, 944, 974, 1082
RsaNI	GTAC	4 cut(s)	44, 943, 973, 1081
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	1072
SapI	GCTCTTC	1 cut(s)	866
SaqAI	TTAA	2 cut(s)	554, 702
SatI	GCNGC	2 cut(s)	83, 288
Sau3AI	GATC	8 cut(s)	56, 206, 220, 651, 788, 955, 1026, 1097
Sau96I	GGNCC	3 cut(s)	116, 485, 896
SchI	GAGTC	2 cut(s)	455, 792
ScrFI	CCNGG	2 cut(s)	214, 600
SduI	GDGCHC	1 cut(s)	1072
SfaNI	GCATC	1 cut(s)	381
SfuI	TTCGAA	1 cut(s)	854
SinI	GGWCC	2 cut(s)	116, 896
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	6 cut(s)	171, 466, 615, 850, 1017, 1047
SsiI	CCGC	1 cut(s)	749
SstI	GAGCTC	1 cut(s)	1072
StyD4I	CCNGG	2 cut(s)	212, 598
StyI	CCWWGG	2 cut(s)	521, 800
TaaI	ACNGT	2 cut(s)	274, 1080
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	2 cut(s)	610, 854
TasI	AATT	6 cut(s)	171, 466, 615, 850, 1017, 1047
TatI	WGTACW	2 cut(s)	43, 972
TfiI	GAWTC	3 cut(s)	431, 796, 1032
Tru1I	TTAA	2 cut(s)	554, 702
Tru9I	TTAA	2 cut(s)	554, 702
TscAI	CASTG	2 cut(s)	340, 834
TseFI	GTSAC	1 cut(s)	1074
TseI	GCWGC	2 cut(s)	82, 287
Tsp45I	GTSAC	1 cut(s)	1074
TspDTI	ATGAA	4 cut(s)	177, 359, 549, 757
TspGWI	ACGGA	1 cut(s)	84
TspRI	CASTG	2 cut(s)	340, 834
VpaK11BI	GGWCC	2 cut(s)	116, 896
XapI	RAATTY	2 cut(s)	615, 850
XmnI	GAANNNNTTC	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.