Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Forward (+)

13016764 .. 13019578

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g15960.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGAGGCTTATAAGAAATGGGTTCGGGAGAACAAGGACTACGTGCACTCCTTGGAATCTCTGGCAAATGGATTCACGTGGCTTGTACCTGAACGGTTTTCTGAATCAGAGATAGGACCAGAAGCAGTAACTACTCTCTTGGGAATAATAAGTGCTATCAATGAACATATAATCAACACATCTCCTACTTCAATGCATGTTGGCTCTACTGAGGATTATTCTTTCCCATATGCATTGTGCATATCTGCACTAAAGGATTTGGAAACGTTGGTTGAAGTTGTGGCTCAGCAGTATTTCGGTGATGAGAAAAAATGGAATTTCATTGCTATTATGGAAGCTGCAAAGGTGCTAGTTAGGTTAGCTTTATTCCGGAACAATGGATATAAGATGCTTCTGCATGGAGGAGAGACACCAAATGATGAAATGCATGTGGAAGCTTCAACTCCTCAACGTAACATGGGTAGTTTTACGAAACCTGGAGGGCAGCTTGGGCCTGGTTACTTAAGAAATAATCATGGACAGGACCCATGGAATTTAGAAGGAAGGGCACTATCTGCATTGACTAGGTTTGGAGAAAATGCCAGGATGGTTTCAGAACCAGTATGGTTACGTAGGGTTCAACACCAGCAAGCAATTATGGAGCCTCCAACTCCAGTGGTTGAGAAGTTGACCCTGTCCACCTTATTGTCCGAGAAAGGTCTTCAAGGGGCGTTTTATATTTTTGGGGAGACTCTATTTATAACTAGACCACTCATCTATGTTTTATTTATTCGGAAGTATGGAATTAGCTCATGGATTCCTTGGTTCCTTTCTCTGGCTGTTGACATCACTGGGATGGGCTTGCTTTCACGAATTACATCATCCAGGGGTGGTACAATAAAGCAGCAGTTTCATCTTTCTGTCTCTGAAAAGAATGAGCTTAAAAGACGAAAGTTGTTGTGGGCACTTTACCTCATGAGAGATCCATTTTTTAGCAAGTATACCAGGCAAAAACTCGAAAGCACCGAGAAAGTTTTGGAACCAGTACCTATTGTTGGGTTTCTTACAGGCAAACTTGTTGAGCTTCTTATAGGAGCTCAGACAAGGTATACTTACATGTCGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

370

Amino Acids

41.82

Weight (kDa)

8.72

Isoelectric Point (pI)

38.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 740
AccI	GTMKAC	2 cut(s)	980, 1088
AccIII	TCCGGA	1 cut(s)	369
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	1 cut(s)	956
AcsI	RAATTY	2 cut(s)	316, 532
AcvI	CACGTG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	87, 874, 1026
AfiI	CCNNNNNNNGG	2 cut(s)	814, 1034
AflII	CTTAAG	1 cut(s)	502
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	5 cut(s)	192, 275, 441, 620, 704
AjnI	CCWGG	5 cut(s)	475, 493, 581, 863, 983
AluBI	AGCT	8 cut(s)	338, 362, 437, 487, 789, 919, 1063, 1076
AluI	AGCT	8 cut(s)	338, 362, 437, 487, 789, 919, 1063, 1076
Alw21I	GWGCWC	2 cut(s)	48, 1078
Alw26I	GTCTC	3 cut(s)	401, 722, 907
Alw44I	GTGCAC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	956
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	1 cut(s)	491
ApaLI	GTGCAC	1 cut(s)	44
ApeKI	GCWGC	3 cut(s)	338, 484, 883
ApoI	RAATTY	2 cut(s)	316, 532
AspS9I	GGNCC	3 cut(s)	116, 491, 523
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	116, 523
BaeGI	GKGCMC	3 cut(s)	48, 550, 946
BanII	GRGCYC	1 cut(s)	1078
BbrPI	CACGTG	1 cut(s)	78
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	48, 1078
BbvI	GCAGC	3 cut(s)	325, 496, 895
BccI	CCATC	2 cut(s)	580, 829
BciT130I	CCWGG	5 cut(s)	477, 495, 583, 865, 985
BcoDI	GTCTC	3 cut(s)	401, 722, 907
BfaI	CTAG	3 cut(s)	350, 564, 744
BfrI	CTTAAG	1 cut(s)	502
BisI	GCNGC	3 cut(s)	339, 485, 884
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	3 cut(s)	340, 486, 885
Bme1390I	CCNGG	5 cut(s)	477, 495, 583, 865, 985
Bme18I	GGWCC	2 cut(s)	116, 523
BmgT120I	GGNCC	3 cut(s)	116, 491, 523
BmiI	GGNNCC	4 cut(s)	525, 642, 806, 1020
BmrFI	CCNGG	5 cut(s)	477, 495, 583, 865, 985
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	1 cut(s)	378
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	692
BpmI	CTGGAG	2 cut(s)	498, 636
Bpu1102I	GCTNAGC	1 cut(s)	285
BsaAI	YACGTR	3 cut(s)	43, 78, 611
BsaJI	CCNNGG	4 cut(s)	51, 527, 800, 864
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	814, 1034
Bse1I	ACTGG	4 cut(s)	599, 653, 835, 1022
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	5 cut(s)	477, 495, 583, 865, 985
BseDI	CCNNGG	4 cut(s)	51, 527, 800, 864
BseGI	GGATG	3 cut(s)	591, 840, 860
BseLI	CCNNNNNNNGG	2 cut(s)	814, 1034
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	201, 299, 1091
BseNI	ACTGG	4 cut(s)	599, 653, 835, 1022
BseRI	GAGGAG	2 cut(s)	417, 435
BseSI	GKGCMC	3 cut(s)	48, 550, 946
BseXI	GCAGC	3 cut(s)	325, 496, 895
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	493
BsiHKAI	GWGCWC	2 cut(s)	48, 1078
BsiSI	CCGG	1 cut(s)	370
BslI	CCNNNNNNNGG	2 cut(s)	814, 1034
BsmAI	GTCTC	3 cut(s)	401, 722, 907
BsnI	GGCC	1 cut(s)	493
Bsp1286I	GDGCHC	4 cut(s)	48, 550, 946, 1078
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	961, 1103
Bsp1720I	GCTNAGC	1 cut(s)	285
Bsp19I	CCATGG	1 cut(s)	527
BspANI	GGCC	1 cut(s)	493
BspCNI	CTCAG	3 cut(s)	202, 298, 1090
BspEI	TCCGGA	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	4 cut(s)	525, 642, 806, 1020
BspPI	GGATC	1 cut(s)	956
BspTI	CTTAAG	1 cut(s)	502
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	4 cut(s)	599, 653, 835, 1022
BssECI	CCNNGG	4 cut(s)	51, 527, 800, 864
BssMI	GATC	2 cut(s)	961, 1103
BssNAI	GTATAC	2 cut(s)	981, 1089
BssT1I	CCWWGG	3 cut(s)	51, 527, 800
Bst1107I	GTATAC	2 cut(s)	981, 1089
Bst2UI	CCWGG	5 cut(s)	477, 495, 583, 865, 985
Bst4CI	ACNGT	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBAI	YACGTR	3 cut(s)	43, 78, 611
BstC8I	GCNNGC	2 cut(s)	630, 842
BstDEI	CTNAG	3 cut(s)	210, 285, 1077
BstDSI	CCRYGG	1 cut(s)	527
BstF5I	GGATG	3 cut(s)	591, 840, 860
BstKTI	GATC	2 cut(s)	964, 1106
BstMAI	GTCTC	3 cut(s)	401, 722, 907
BstMBI	GATC	2 cut(s)	961, 1103
BstMWI	GCNNNNNNNGC	2 cut(s)	490, 554
BstNI	CCWGG	5 cut(s)	477, 495, 583, 865, 985
BstNSI	RCATGY	3 cut(s)	200, 431, 1099
BstSCI	CCNGG	5 cut(s)	475, 493, 581, 863, 983
BstSLI	GKGCMC	3 cut(s)	48, 550, 946
BstSNI	TACGTA	1 cut(s)	611
BstV1I	GCAGC	3 cut(s)	325, 496, 895
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	961
BstYI	RGATCY	1 cut(s)	961
BstZ17I	GTATAC	2 cut(s)	981, 1089
BsuRI	GGCC	1 cut(s)	493
BtgI	CCRYGG	1 cut(s)	527
BtsCI	GGATG	3 cut(s)	591, 840, 860
BtsIMutI	CAGTG	2 cut(s)	660, 828
Cac8I	GCNNGC	2 cut(s)	630, 842
CciI	TCATGA	1 cut(s)	954
Cfr13I	GGNCC	3 cut(s)	116, 491, 523
Csp6I	GTAC	3 cut(s)	86, 873, 1025
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	9 cut(s)	197, 398, 428, 457, 515, 528, 792, 955, 1096
CviQI	GTAC	3 cut(s)	86, 873, 1025
DdeI	CTNAG	3 cut(s)	210, 285, 1077
DpnI	GATC	2 cut(s)	963, 1105
DpnII	GATC	2 cut(s)	961, 1103
Ecl136II	GAGCTC	1 cut(s)	1076
Eco105I	TACGTA	1 cut(s)	611
Eco130I	CCWWGG	3 cut(s)	51, 527, 800
Eco24I	GRGCYC	1 cut(s)	1078
Eco47I	GGWCC	2 cut(s)	116, 523
Eco53kI	GAGCTC	1 cut(s)	1076
Eco72I	CACGTG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	1076
EcoO109I	RGGNCCY	1 cut(s)	523
EcoRII	CCWGG	5 cut(s)	475, 493, 581, 863, 983
EcoT14I	CCWWGG	3 cut(s)	51, 527, 800
EcoT22I	ATGCAT	3 cut(s)	198, 235, 429
EcoT38I	GRGCYC	1 cut(s)	1078
ErhI	CCWWGG	3 cut(s)	51, 527, 800
FaeI	CATG	9 cut(s)	200, 401, 431, 460, 518, 531, 795, 958, 1099
FalI	AAGNNNNNCTT	2 cut(s)	1075, 1107
FatI	CATG	9 cut(s)	196, 397, 427, 456, 514, 527, 791, 954, 1095
FauNDI	CATATG	1 cut(s)	229
FblI	GTMKAC	2 cut(s)	980, 1088
Fnu4HI	GCNGC	3 cut(s)	339, 485, 884
FokI	GGATG	3 cut(s)	598, 847, 847
FriOI	GRGCYC	1 cut(s)	1078
Fsp4HI	GCNGC	3 cut(s)	339, 485, 884
FspBI	CTAG	3 cut(s)	350, 564, 744
GluI	GCNGC	3 cut(s)	339, 485, 884
GsuI	CTGGAG	2 cut(s)	498, 636
HaeIII	GGCC	1 cut(s)	493
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	9 cut(s)	200, 401, 431, 460, 518, 531, 795, 958, 1099
HincII	GTYRAC	2 cut(s)	669, 823
HindII	GTYRAC	2 cut(s)	669, 823
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	5 cut(s)	56, 72, 104, 730, 796
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	6 cut(s)	46, 669, 678, 823, 981, 1089
Hpy188I	TCNGA	7 cut(s)	103, 109, 595, 691, 774, 907, 1080
Hpy188III	TCNNGA	5 cut(s)	26, 370, 849, 955, 1101
Hpy8I	GTNNAC	6 cut(s)	46, 669, 678, 823, 981, 1089
HpyAV	CCTTC	2 cut(s)	533, 537
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	5 cut(s)	42, 77, 266, 451, 610
HpyCH4V	TGCA	9 cut(s)	46, 196, 233, 240, 248, 341, 397, 427, 557
HpyF10VI	GCNNNNNNNGC	2 cut(s)	490, 554
HpyF3I	CTNAG	3 cut(s)	210, 285, 1077
HpySE526I	ACGT	5 cut(s)	42, 77, 266, 451, 610
Hsp92II	CATG	9 cut(s)	200, 401, 431, 460, 518, 531, 795, 958, 1099
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	961, 1103
LmnI	GCTCC	2 cut(s)	640, 1073
Lsp1109I	GCAGC	3 cut(s)	325, 496, 895
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	350, 564, 744
MaeII	ACGT	5 cut(s)	42, 77, 266, 451, 610
MaeIII	GTNAC	4 cut(s)	127, 452, 497, 606
MalI	GATC	2 cut(s)	963, 1105
MboI	GATC	2 cut(s)	961, 1103
MboII	GAAGA	1 cut(s)	692
MflI	RGATCY	1 cut(s)	961
MhlI	GDGCHC	4 cut(s)	48, 550, 946, 1078
MluCI	AATT	5 cut(s)	316, 532, 633, 783, 852
MlyI	GAGTC	1 cut(s)	724
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	6 cut(s)	205, 395, 456, 473, 654, 962
Mph1103I	ATGCAT	3 cut(s)	198, 235, 429
MroI	TCCGGA	1 cut(s)	369
MseI	TTAA	2 cut(s)	503, 921
MslI	CAYNNNNRTG	1 cut(s)	833
MspCI	CTTAAG	1 cut(s)	502
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	5 cut(s)	477, 495, 583, 865, 985
MvaI	CCWGG	5 cut(s)	477, 495, 583, 865, 985
MwoI	GCNNNNNNNGC	2 cut(s)	490, 554
NcoI	CCATGG	1 cut(s)	527
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	961, 1103
NlaIII	CATG	9 cut(s)	200, 401, 431, 460, 518, 531, 795, 958, 1099
NlaIV	GGNNCC	4 cut(s)	525, 642, 806, 1020
NsiI	ATGCAT	3 cut(s)	198, 235, 429
NspI	RCATGY	3 cut(s)	200, 431, 1099
PagI	TCATGA	1 cut(s)	954
PciI	ACATGT	1 cut(s)	1095
PcsI	WCGNNNNNNNCGW	1 cut(s)	1002
PfeI	GAWTC	4 cut(s)	56, 72, 104, 796
PflFI	GACNNNGTC	1 cut(s)	673
PkrI	GCNGC	3 cut(s)	340, 486, 885
PleI	GAGTC	1 cut(s)	724
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	724
Ppu21I	YACGTR	3 cut(s)	43, 78, 611
PpuMI	RGGWCCY	1 cut(s)	523
PscI	ACATGT	1 cut(s)	1095
PsiI	TTATAA	2 cut(s)	12, 740
Psp124BI	GAGCTC	1 cut(s)	1078
Psp1406I	AACGTT	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	5 cut(s)	475, 493, 581, 863, 983
PspCI	CACGTG	1 cut(s)	78
PspGI	CCWGG	5 cut(s)	475, 493, 581, 863, 983
PspN4I	GGNNCC	4 cut(s)	525, 642, 806, 1020
PspPI	GGNCC	3 cut(s)	116, 491, 523
PspPPI	RGGWCCY	1 cut(s)	523
PsrI	GAACNNNNNNTAC	2 cut(s)	23, 55
PsuI	RGATCY	1 cut(s)	961
PsyI	GACNNNGTC	1 cut(s)	673
RsaI	GTAC	3 cut(s)	87, 874, 1026
RsaNI	GTAC	3 cut(s)	86, 873, 1025
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	1 cut(s)	1078
SaqAI	TTAA	2 cut(s)	503, 921
SatI	GCNGC	3 cut(s)	339, 485, 884
Sau3AI	GATC	2 cut(s)	961, 1103
Sau96I	GGNCC	3 cut(s)	116, 491, 523
SchI	GAGTC	1 cut(s)	724
ScrFI	CCNGG	5 cut(s)	477, 495, 583, 865, 985
SduI	GDGCHC	4 cut(s)	48, 550, 946, 1078
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	2 cut(s)	116, 523
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SnaBI	TACGTA	1 cut(s)	611
Sse9I	AATT	5 cut(s)	316, 532, 633, 783, 852
SspMI	CTAG	3 cut(s)	350, 564, 744
SstI	GAGCTC	1 cut(s)	1078
StyD4I	CCNGG	5 cut(s)	475, 493, 581, 863, 983
StyI	CCWWGG	3 cut(s)	51, 527, 800
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	5 cut(s)	45, 80, 269, 454, 613
TaqI	TCGA	1 cut(s)	996
TasI	AATT	5 cut(s)	316, 532, 633, 783, 852
TfiI	GAWTC	4 cut(s)	56, 72, 104, 796
Tru1I	TTAA	2 cut(s)	503, 921
Tru9I	TTAA	2 cut(s)	503, 921
TscAI	CASTG	2 cut(s)	660, 835
TseI	GCWGC	3 cut(s)	338, 484, 883
TspDTI	ATGAA	4 cut(s)	177, 310, 435, 881
TspRI	CASTG	2 cut(s)	660, 835
Tth111I	GACNNNGTC	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	502
VneI	GTGCAC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	116, 523
XapI	RAATTY	2 cut(s)	316, 532
XceI	RCATGY	3 cut(s)	200, 431, 1099
XmiI	GTMKAC	2 cut(s)	980, 1088
XspI	CTAG	3 cut(s)	350, 564, 744
Zsp2I	ATGCAT	3 cut(s)	198, 235, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.