Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

32510145 .. 32513831

Gene Structure 3687 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGGCTTATAAGAAATGGGTCAGGGAGAACAAGGACTATGTTCACTCCCTGGAGTCTCTCGCCAATGGATTCACTTGGCTTCTACCTGAACGGTTTTCTCAATCAGAGATAGGACCAGAAGCAGTAACTACTATCTTGGGAATATTAACTGCTGTCAATGAACATATAATCGACACAGCTTCTCCTCGATTACATGCTGGCCATGCTGAGCGTAATTCTTTTCCTTATCCATTGTGTATATCTGCACTAAAGGACTTGGAAACGTTGGTTGAAGTTGTGGCTCAACAGTACTTTGGTGATGACAAAAAATGGAATTACATTGCTATTATGGAGGCTAGCAAGGTGCTAGTTAGGTTAGCTTTGTTCCGGAACAGTGGATATAAGATGCTTCTCCATGGAGGAGAGACACCAAATGATGAAAAAAATTTGGATGCTTCAACTCCGCAGCGTAGAAGTGGTGGTTTTATGAAGCCTGGCGAGCAGCATGGGAATGGTCACTTGAGAAATAATCATGCACAAGATCCATGGAATTTAGAAGGAAGAGCACTATCTGCATTGAATAGGTTTGGAGAAAAGGCTCGGACTGTTTCAGATCCAGTATGGTTGCGTAGGGTTCAACATCAGCATGCCATTATGGAGCCTCCAAGTAACTACTCATATACACACTGGGAAAAGTGTAATTACAATTTATGTTGGTTTCTATTAATACGAGATTTTATTTTCTCACAGCTCCAGTGGTTGAGAGGTCGACTCTATCCACAATATTGTCCGAAAAGGGTCTCTATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

274

Amino Acids

31.68

Weight (kDa)

8.66

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	2 - 211	2.4e-46	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 823
AccI	GTMKAC	1 cut(s)	751
AccIII	TCCGGA	1 cut(s)	369
AciI	CCGC	1 cut(s)	446
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	2 cut(s)	518, 590
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	427, 532
AfaI	GTAC	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	275, 441, 562, 620
AjnI	CCWGG	2 cut(s)	51, 475
AluBI	AGCT	3 cut(s)	182, 362, 733
AluI	AGCT	3 cut(s)	182, 362, 733
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	3 cut(s)	63, 401, 787
AlwI	GGATC	2 cut(s)	518, 590
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	448, 484
ApoI	RAATTY	2 cut(s)	427, 532
AseI	ATTAAT	1 cut(s)	707
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	116
BalI	TGGCCA	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	550
BbvI	GCAGC	2 cut(s)	460, 496
BciT130I	CCWGG	2 cut(s)	53, 477
BcoDI	GTCTC	3 cut(s)	63, 401, 787
BfaI	CTAG	2 cut(s)	339, 350
BisI	GCNGC	2 cut(s)	449, 485
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	2 cut(s)	450, 486
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	53, 477
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	2 cut(s)	53, 477
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	2 cut(s)	378, 424
BmtI	GCTAGC	1 cut(s)	342
BmuI	ACTGGG	1 cut(s)	679
BplI	GAGNNNNNCTC	2 cut(s)	738, 770
BpmI	CTGGAG	2 cut(s)	74, 719
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	787
BsaJI	CCNNGG	3 cut(s)	51, 397, 527
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bse1I	ACTGG	3 cut(s)	599, 674, 736
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	53, 477
BseDI	CCNNGG	3 cut(s)	51, 397, 527
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	201
BseNI	ACTGG	3 cut(s)	599, 674, 736
BseRI	GAGGAG	2 cut(s)	177, 417
BseXI	GCAGC	2 cut(s)	460, 496
BseYI	CCCAGC	1 cut(s)	805
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	370
BsmAI	GTCTC	3 cut(s)	63, 401, 787
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	787
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	2 cut(s)	523, 595
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	2 cut(s)	397, 527
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	1 cut(s)	202
BspEI	TCCGGA	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	642
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	2 cut(s)	518, 590
BspQI	GCTCTTC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	787
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	599, 674, 736
BssECI	CCNNGG	3 cut(s)	51, 397, 527
BssMI	GATC	2 cut(s)	523, 595
BssT1I	CCWWGG	2 cut(s)	397, 527
Bst2UI	CCWGG	2 cut(s)	53, 477
Bst4CI	ACNGT	4 cut(s)	96, 291, 377, 589
Bst6I	CTCTTC	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	4 cut(s)	202, 340, 482, 630
BstDEI	CTNAG	1 cut(s)	210
BstDSI	CCRYGG	2 cut(s)	397, 527
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	2 cut(s)	526, 598
BstMAI	GTCTC	3 cut(s)	63, 401, 787
BstMBI	GATC	2 cut(s)	523, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 481, 554
BstNI	CCWGG	2 cut(s)	53, 477
BstNSI	RCATGY	2 cut(s)	200, 632
BstSCI	CCNGG	2 cut(s)	51, 475
BstV1I	GCAGC	2 cut(s)	460, 496
BstX2I	RGATCY	2 cut(s)	523, 595
BstYI	RGATCY	2 cut(s)	523, 595
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	2 cut(s)	397, 527
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	382, 667, 743
Cac8I	GCNNGC	4 cut(s)	202, 340, 482, 630
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	7 cut(s)	197, 206, 398, 488, 515, 528, 629
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	2 cut(s)	525, 597
DpnII	GATC	2 cut(s)	523, 595
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco130I	CCWWGG	2 cut(s)	397, 527
Eco31I	GGTCTC	1 cut(s)	787
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	51, 475
EcoT14I	CCWWGG	2 cut(s)	397, 527
ErhI	CCWWGG	2 cut(s)	397, 527
FaeI	CATG	7 cut(s)	200, 209, 401, 491, 518, 531, 632
FatI	CATG	7 cut(s)	196, 205, 397, 487, 514, 527, 628
FblI	GTMKAC	1 cut(s)	751
Fnu4HI	GCNGC	2 cut(s)	449, 485
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	2 cut(s)	449, 485
FspBI	CTAG	2 cut(s)	339, 350
GluI	GCNGC	2 cut(s)	449, 485
GsaI	CCCAGC	1 cut(s)	809
GsuI	CTGGAG	2 cut(s)	74, 719
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	370
Hin1II	CATG	7 cut(s)	200, 209, 401, 491, 518, 531, 632
HincII	GTYRAC	1 cut(s)	752
HindII	GTYRAC	1 cut(s)	752
HinfI	GANTC	3 cut(s)	56, 72, 753
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	46, 752
Hpy188I	TCNGA	4 cut(s)	109, 585, 595, 774
Hpy188III	TCNNGA	1 cut(s)	370
Hpy8I	GTNNAC	2 cut(s)	46, 752
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	4 cut(s)	96, 291, 377, 589
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	248, 518, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 481, 554
HpyF3I	CTNAG	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	266
Hsp92II	CATG	7 cut(s)	200, 209, 401, 491, 518, 531, 632
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	523, 595
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	2 cut(s)	640, 738
Lsp1109I	GCAGC	2 cut(s)	460, 496
LweI	GCATC	2 cut(s)	378, 424
MaeI	CTAG	2 cut(s)	339, 350
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	3 cut(s)	127, 497, 650
MalI	GATC	2 cut(s)	525, 597
MboI	GATC	2 cut(s)	523, 595
MboII	GAAGA	1 cut(s)	555
MflI	RGATCY	2 cut(s)	523, 595
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	6 cut(s)	217, 316, 427, 532, 682, 688
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	65, 747
MnlI	CCTC	5 cut(s)	198, 328, 395, 654, 740
Mox20I	TGGCCA	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	149, 707
MslI	CAYNNNNRTG	2 cut(s)	492, 627
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	53, 477
MvaI	CCWGG	2 cut(s)	53, 477
MwoI	GCNNNNNNNGC	3 cut(s)	206, 481, 554
NcoI	CCATGG	2 cut(s)	397, 527
NdeII	GATC	2 cut(s)	523, 595
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	7 cut(s)	200, 209, 401, 491, 518, 531, 632
NlaIV	GGNNCC	1 cut(s)	642
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	2 cut(s)	200, 632
PaeI	GCATGC	1 cut(s)	632
PciSI	GCTCTTC	1 cut(s)	538
PfeI	GAWTC	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	450, 486
PleI	GAGTC	2 cut(s)	64, 747
PpsI	GAGTC	2 cut(s)	64, 747
PshBI	ATTAAT	1 cut(s)	707
PsiI	TTATAA	2 cut(s)	12, 823
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	51, 475
PspFI	CCCAGC	1 cut(s)	805
PspGI	CCWGG	2 cut(s)	51, 475
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	523, 595
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
RseI	CAYNNNNRTG	2 cut(s)	492, 627
SalI	GTCGAC	1 cut(s)	750
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	149, 707
SatI	GCNGC	2 cut(s)	449, 485
Sau3AI	GATC	2 cut(s)	523, 595
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	2 cut(s)	65, 747
ScrFI	CCNGG	2 cut(s)	53, 477
SduI	GDGCHC	1 cut(s)	550
SetI	ASST	9 cut(s)	91, 184, 269, 348, 359, 364, 569, 735, 751
SfaNI	GCATC	2 cut(s)	378, 424
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	492, 627
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	6 cut(s)	217, 316, 427, 532, 682, 688
SsiI	CCGC	1 cut(s)	446
SspI	AATATT	2 cut(s)	147, 767
SspMI	CTAG	2 cut(s)	339, 350
StyD4I	CCNGG	2 cut(s)	51, 475
StyI	CCWWGG	2 cut(s)	397, 527
TaaI	ACNGT	4 cut(s)	96, 291, 377, 589
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	3 cut(s)	174, 190, 751
TasI	AATT	6 cut(s)	217, 316, 427, 532, 682, 688
TatI	WGTACW	1 cut(s)	291
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	149, 707
Tru9I	TTAA	2 cut(s)	149, 707
TscAI	CASTG	3 cut(s)	382, 674, 743
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	448, 484
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	177, 435, 485
TspRI	CASTG	3 cut(s)	382, 674, 743
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	707
XapI	RAATTY	2 cut(s)	427, 532
XceI	RCATGY	2 cut(s)	200, 632
XmiI	GTMKAC	1 cut(s)	751
XspI	CTAG	2 cut(s)	339, 350
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.