Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

47131410 .. 47137611

Gene Structure 6202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGAGGCTAGCAAGGTGCTAGTTAGGTTAGCTTTGTTCCGGAACAGTGGATATAAGATGCTTCTCCATGGAGGAGAGACACCAAATCATGAAAAAAATTTGGATGCTTCAACTCCTCAGCGTAGAAGTGGTGGTTTTATGAAGCCTGGTGAGCAGCATGGGAATGGTCACTTGAGAAATAATCATGCACAGGATCCATGGAATTTAGAAGGAAGAGCACTATCTGCATTGAATAGGTTTGGAGAAAAGGCTAGAACTGTTTCAGATCCAGTATGGTTGCGTCGGGTTCAACACCAGCATGCCATTATGGAGCCTCCAACTCCAATGGTTGAGAGGTCGACTCTATCCTCCATATTGTCCGAAAAGGGTCTCCATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATTTATGTTTTATTTATTCGGAAATATGGAGCTCGCTCCTGGATTCCTTGGTTTCTTTCGCTGGCTGTGGACTTCACTGGAATGGGCATTCTATCTCGAATTACTTCGTCCACAGGTGGTACAAAAGAGCAGCAGTTTCATCTTTCTGTCCCTGAAAAGAATGAGGTTAAAAGACGAAAACTGTTATGGGCACTTTACCTCATGAGAGATCCGTTTTTCAGCAAGTATACCAGGCGAAGACTTGAAGGCACTGAGAATATGTTGGAACATATACCAGTTGTTGGATTTCTTGCAGCAAAACTTGTTGAGCTTATTTCAGGAGCACAGACAAGGTATACTTACATGTCAGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

259

Amino Acids

29.4

Weight (kDa)

10.1

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	2 - 250	3.1e-55	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	410
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	3 cut(s)	338, 650, 758
AccIII	TCCGGA	1 cut(s)	39
AclWI	GGATC	4 cut(s)	188, 201, 260, 626
AcsI	RAATTY	2 cut(s)	97, 202
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	1 cut(s)	704
AflIII	ACRYGT	1 cut(s)	765
AgsI	TTSAA	4 cut(s)	111, 232, 290, 668
AjnI	CCWGG	3 cut(s)	145, 461, 653
AluBI	AGCT	3 cut(s)	32, 455, 733
AluI	AGCT	3 cut(s)	32, 455, 733
Alw21I	GWGCWC	3 cut(s)	220, 457, 748
Alw26I	GTCTC	2 cut(s)	71, 374
AlwI	GGATC	4 cut(s)	188, 201, 260, 626
Aor13HI	TCCGGA	1 cut(s)	39
ApeKI	GCWGC	3 cut(s)	154, 553, 716
ApoI	RAATTY	2 cut(s)	97, 202
Asp700I	GAANNNNTTC	2 cut(s)	259, 526
AsuHPI	GGTGA	1 cut(s)	161
AsuNHI	GCTAGC	1 cut(s)	8
BaeGI	GKGCMC	1 cut(s)	616
BamHI	GGATCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	3 cut(s)	220, 457, 748
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	3 cut(s)	166, 565, 728
BciT130I	CCWGG	3 cut(s)	147, 463, 655
BcoDI	GTCTC	2 cut(s)	71, 374
BfaI	CTAG	3 cut(s)	9, 20, 252
BisI	GCNGC	3 cut(s)	155, 554, 717
BlsI	GCNGC	3 cut(s)	156, 555, 718
Bme1390I	CCNGG	3 cut(s)	147, 463, 655
BmiI	GGNNCC	2 cut(s)	195, 312
BmrFI	CCNGG	3 cut(s)	147, 463, 655
BmsI	GCATC	2 cut(s)	48, 94
BmtI	GCTAGC	1 cut(s)	12
BpiI	GAAGAC	1 cut(s)	667
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
Bpu10I	CCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	4 cut(s)	67, 197, 373, 470
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	704
Bse1I	ACTGG	3 cut(s)	269, 505, 698
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	3 cut(s)	147, 463, 655
BseDI	CCNNGG	4 cut(s)	67, 197, 373, 470
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	704
BseMII	CTCAG	2 cut(s)	131, 666
BseNI	ACTGG	3 cut(s)	269, 505, 698
BseRI	GAGGAG	2 cut(s)	87, 105
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	166, 565, 728
BseYI	CCCAGC	1 cut(s)	392
BsiHKAI	GWGCWC	3 cut(s)	220, 457, 748
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	557
BslI	CCNNNNNNNGG	1 cut(s)	704
BsmAI	GTCTC	2 cut(s)	71, 374
BsmFI	GGGAC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	510
Bso31I	GGTCTC	1 cut(s)	374
Bsp1286I	GDGCHC	4 cut(s)	220, 457, 616, 748
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	4 cut(s)	193, 265, 631, 773
Bsp19I	CCATGG	3 cut(s)	67, 197, 373
BspCNI	CTCAG	2 cut(s)	130, 667
BspEI	TCCGGA	1 cut(s)	39
BspHI	TCATGA	2 cut(s)	88, 624
BspLI	GGNNCC	2 cut(s)	195, 312
BspOI	GCTAGC	1 cut(s)	12
BspPI	GGATC	4 cut(s)	188, 201, 260, 626
BspQI	GCTCTTC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	374
BsrI	ACTGG	3 cut(s)	269, 505, 698
BssECI	CCNNGG	4 cut(s)	67, 197, 373, 470
BssMI	GATC	4 cut(s)	193, 265, 631, 773
BssNAI	GTATAC	2 cut(s)	651, 759
BssT1I	CCWWGG	4 cut(s)	67, 197, 373, 470
Bst1107I	GTATAC	2 cut(s)	651, 759
Bst2UI	CCWGG	3 cut(s)	147, 463, 655
Bst4CI	ACNGT	3 cut(s)	47, 259, 606
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	4 cut(s)	10, 300, 457, 486
BstDEI	CTNAG	2 cut(s)	117, 675
BstDSI	CCRYGG	3 cut(s)	67, 197, 373
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	4 cut(s)	196, 268, 634, 776
BstMAI	GTCTC	2 cut(s)	71, 374
BstMBI	GATC	4 cut(s)	193, 265, 631, 773
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 224
BstNI	CCWGG	3 cut(s)	147, 463, 655
BstNSI	RCATGY	2 cut(s)	302, 769
BstSCI	CCNGG	3 cut(s)	145, 461, 653
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	3 cut(s)	166, 565, 728
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	3 cut(s)	193, 265, 631
BstYI	RGATCY	3 cut(s)	193, 265, 631
BstZ17I	GTATAC	2 cut(s)	651, 759
BtgI	CCRYGG	3 cut(s)	67, 197, 373
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	3 cut(s)	52, 498, 672
Cac8I	GCNNGC	4 cut(s)	10, 300, 457, 486
CciI	TCATGA	2 cut(s)	88, 624
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	9 cut(s)	68, 89, 158, 185, 198, 299, 374, 625, 766
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	2 cut(s)	117, 675
DpnI	GATC	4 cut(s)	195, 267, 633, 775
DpnII	GATC	4 cut(s)	193, 265, 631, 773
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	455
Eco130I	CCWWGG	4 cut(s)	67, 197, 373, 470
Eco24I	GRGCYC	1 cut(s)	457
Eco31I	GGTCTC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	455
EcoRII	CCWGG	3 cut(s)	145, 461, 653
EcoT14I	CCWWGG	4 cut(s)	67, 197, 373, 470
EcoT38I	GRGCYC	1 cut(s)	457
ErhI	CCWWGG	4 cut(s)	67, 197, 373, 470
FaeI	CATG	9 cut(s)	71, 92, 161, 188, 201, 302, 377, 628, 769
FalI	AAGNNNNNCTT	2 cut(s)	745, 777
FaqI	GGGAC	1 cut(s)	557
FatI	CATG	9 cut(s)	67, 88, 157, 184, 197, 298, 373, 624, 765
FblI	GTMKAC	3 cut(s)	338, 650, 758
Fnu4HI	GCNGC	3 cut(s)	155, 554, 717
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	457
Fsp4HI	GCNGC	3 cut(s)	155, 554, 717
FspBI	CTAG	3 cut(s)	9, 20, 252
GluI	GCNGC	3 cut(s)	155, 554, 717
GsaI	CCCAGC	1 cut(s)	396
HapII	CCGG	1 cut(s)	40
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	9 cut(s)	71, 92, 161, 188, 201, 302, 377, 628, 769
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	2 cut(s)	340, 466
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	5 cut(s)	339, 493, 534, 651, 759
Hpy188I	TCNGA	3 cut(s)	265, 361, 444
Hpy188III	TCNNGA	6 cut(s)	40, 89, 519, 625, 741, 771
Hpy8I	GTNNAC	5 cut(s)	339, 493, 534, 651, 759
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	2 cut(s)	203, 662
HpyCH4III	ACNGT	3 cut(s)	47, 259, 606
HpyCH4V	TGCA	3 cut(s)	188, 227, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 224
HpyF3I	CTNAG	2 cut(s)	117, 675
Hsp92II	CATG	9 cut(s)	71, 92, 161, 188, 201, 302, 377, 628, 769
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	4 cut(s)	193, 265, 631, 773
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	4 cut(s)	310, 452, 464, 743
Lsp1109I	GCAGC	3 cut(s)	166, 565, 728
LweI	GCATC	2 cut(s)	48, 94
MaeI	CTAG	3 cut(s)	9, 20, 252
MaeIII	GTNAC	1 cut(s)	167
MalI	GATC	4 cut(s)	195, 267, 633, 775
MboI	GATC	4 cut(s)	193, 265, 631, 773
MboII	GAAGA	2 cut(s)	225, 672
MflI	RGATCY	3 cut(s)	193, 265, 631
MhlI	GDGCHC	4 cut(s)	220, 457, 616, 748
MluCI	AATT	3 cut(s)	97, 202, 522
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	3 cut(s)	341, 666, 685
MnlI	CCTC	7 cut(s)	65, 126, 324, 327, 358, 580, 632
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	2 cut(s)	259, 526
MseI	TTAA	1 cut(s)	591
MslI	CAYNNNNRTG	3 cut(s)	162, 297, 503
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	147, 463, 655
Mva1269I	GAATGC	1 cut(s)	510
MvaI	CCWGG	3 cut(s)	147, 463, 655
MwoI	GCNNNNNNNGC	2 cut(s)	151, 224
NcoI	CCATGG	3 cut(s)	67, 197, 373
NdeII	GATC	4 cut(s)	193, 265, 631, 773
NheI	GCTAGC	1 cut(s)	8
NlaIII	CATG	9 cut(s)	71, 92, 161, 188, 201, 302, 377, 628, 769
NlaIV	GGNNCC	2 cut(s)	195, 312
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	2 cut(s)	302, 769
PaeI	GCATGC	1 cut(s)	302
PagI	TCATGA	2 cut(s)	88, 624
PciI	ACATGT	1 cut(s)	765
PciSI	GCTCTTC	1 cut(s)	208
PctI	GAATGC	1 cut(s)	510
PdmI	GAANNNNTTC	2 cut(s)	259, 526
PfeI	GAWTC	1 cut(s)	466
PflMI	CCANNNNNTGG	1 cut(s)	704
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	3 cut(s)	156, 555, 718
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PscI	ACATGT	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	410
Psp124BI	GAGCTC	1 cut(s)	457
Psp6I	CCWGG	3 cut(s)	145, 461, 653
PspFI	CCCAGC	1 cut(s)	392
PspGI	CCWGG	3 cut(s)	145, 461, 653
PspN4I	GGNNCC	2 cut(s)	195, 312
PsuI	RGATCY	3 cut(s)	193, 265, 631
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	3 cut(s)	162, 297, 503
SacI	GAGCTC	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	591
SatI	GCNGC	3 cut(s)	155, 554, 717
Sau3AI	GATC	4 cut(s)	193, 265, 631, 773
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	3 cut(s)	147, 463, 655
SduI	GDGCHC	4 cut(s)	220, 457, 616, 748
SfaNI	GCATC	2 cut(s)	48, 94
SmiMI	CAYNNNNRTG	3 cut(s)	162, 297, 503
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
SphI	GCATGC	1 cut(s)	302
Sse9I	AATT	3 cut(s)	97, 202, 522
SspMI	CTAG	3 cut(s)	9, 20, 252
SstI	GAGCTC	1 cut(s)	457
StyD4I	CCNGG	3 cut(s)	145, 461, 653
StyI	CCWWGG	4 cut(s)	67, 197, 373, 470
TaaI	ACNGT	3 cut(s)	47, 259, 606
TaqI	TCGA	2 cut(s)	338, 520
TasI	AATT	3 cut(s)	97, 202, 522
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	3 cut(s)	52, 505, 679
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	154, 553, 716
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	105, 155, 551
TspGWI	ACGGA	1 cut(s)	624
TspRI	CASTG	3 cut(s)	52, 505, 679
Van91I	CCANNNNNTGG	1 cut(s)	704
XapI	RAATTY	2 cut(s)	97, 202
XceI	RCATGY	2 cut(s)	302, 769
XmiI	GTMKAC	3 cut(s)	338, 650, 758
XmnI	GAANNNNTTC	2 cut(s)	259, 526
XspI	CTAG	3 cut(s)	9, 20, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.