Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8139044.1

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 638

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8139044.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

actatcttgggaatattaactgctgtcaatgaacatataatcgacacagcttctcctcgattacatgctggccatgctgcgcgtaattcttttccttatccattgtgtatatctgcactaaaggacttggaaacgttggttgaagttgtggctcaacagtactttggtgatgacaaaaaatggaattacattgctattatggaggctagcaaggtgctagttaggttagctttgttccggaacagtggatataagatgcttctccatggaggagagacaccaaatgatgaaaaaaatttggatgcttcaactcctcagcgtcgaagtggtggttttatgaagcctggtgagcagcatgggaatggtcacttgagaaataatcatgcacaggatccatggaatttagaaggaagagcactatctgcattgaataggtttggagaaaaggctagaactgtttcagatccagtatggttgcgtcgggttcaacaccagcatgccattatggagcctccaagtaactactcatatacacac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

179

Amino Acids

20.12

Weight (kDa)

8.71

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AccIII	TCCGGA	1 cut(s)	237
AclI	AACGTT	1 cut(s)	134
AclWI	GGATC	3 cut(s)	386, 399, 458
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	295, 400
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	143, 309, 430, 488
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	50, 230
AluI	AGCT	2 cut(s)	50, 230
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	386, 399, 458
Aor13HI	TCCGGA	1 cut(s)	237
AoxI	GGCC	1 cut(s)	70
ApeKI	GCWGC	2 cut(s)	77, 352
ApoI	RAATTY	2 cut(s)	295, 400
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	179, 359
AsuNHI	GCTAGC	1 cut(s)	206
BalI	TGGCCA	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	391
Bbv12I	GWGCWC	1 cut(s)	418
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	64, 364
BciT130I	CCWGG	1 cut(s)	345
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	3 cut(s)	207, 218, 450
BisI	GCNGC	2 cut(s)	78, 353
BlsI	GCNGC	2 cut(s)	79, 354
BmcAI	AGTACT	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	345
BmiI	GGNNCC	2 cut(s)	393, 510
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	246, 292
BmtI	GCTAGC	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	391
BsaJI	CCNNGG	2 cut(s)	265, 395
BsaWI	WCCGGW	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bse1I	ACTGG	1 cut(s)	467
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	265, 395
BseGI	GGATG	1 cut(s)	307
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	3 cut(s)	45, 285, 303
BseXI	GCAGC	2 cut(s)	64, 364
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	269
BsnI	GGCC	1 cut(s)	72
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp13I	TCCGGA	1 cut(s)	237
Bsp143I	GATC	2 cut(s)	391, 463
Bsp19I	CCATGG	2 cut(s)	265, 395
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	328
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	2 cut(s)	393, 510
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	3 cut(s)	386, 399, 458
BspQI	GCTCTTC	1 cut(s)	406
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	265, 395
BssMI	GATC	2 cut(s)	391, 463
BssT1I	CCWWGG	2 cut(s)	265, 395
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	3 cut(s)	159, 245, 457
Bst6I	CTCTTC	1 cut(s)	406
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstC8I	GCNNGC	3 cut(s)	70, 208, 498
BstDEI	CTNAG	1 cut(s)	315
BstDSI	CCRYGG	2 cut(s)	265, 395
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	394, 466
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	391, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 349, 422
BstNI	CCWGG	1 cut(s)	345
BstNSI	RCATGY	2 cut(s)	68, 500
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	2 cut(s)	64, 364
BstX2I	RGATCY	2 cut(s)	391, 463
BstYI	RGATCY	2 cut(s)	391, 463
BsuRI	GGCC	1 cut(s)	72
BtgI	CCRYGG	2 cut(s)	265, 395
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	3 cut(s)	70, 208, 498
CfoI	GCGC	1 cut(s)	82
CseI	GACGC	2 cut(s)	308, 467
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	7 cut(s)	65, 74, 266, 356, 383, 396, 497
CviJI	RGCY	8 cut(s)	50, 72, 152, 206, 230, 343, 449, 511
CviKI_1	RGCY	8 cut(s)	50, 72, 152, 206, 230, 343, 449, 511
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	393, 465
DpnII	GATC	2 cut(s)	391, 463
EaeI	YGGCCR	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco130I	CCWWGG	2 cut(s)	265, 395
EcoRII	CCWGG	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	265, 395
ErhI	CCWWGG	2 cut(s)	265, 395
FaeI	CATG	7 cut(s)	68, 77, 269, 359, 386, 399, 500
FatI	CATG	7 cut(s)	64, 73, 265, 355, 382, 395, 496
Fnu4HI	GCNGC	2 cut(s)	78, 353
FokI	GGATG	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	78, 353
FspBI	CTAG	3 cut(s)	207, 218, 450
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	2 cut(s)	78, 353
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	238
HgaI	GACGC	2 cut(s)	308, 467
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	7 cut(s)	68, 77, 269, 359, 386, 399, 500
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	2 cut(s)	179, 359
Hpy188I	TCNGA	1 cut(s)	463
Hpy188III	TCNNGA	1 cut(s)	238
Hpy99I	CGWCG	2 cut(s)	324, 483
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	159, 245, 457
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	116, 386, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 349, 422
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	7 cut(s)	68, 77, 269, 359, 386, 399, 500
HspAI	GCGC	1 cut(s)	80
Kpn2I	TCCGGA	1 cut(s)	237
Kzo9I	GATC	2 cut(s)	391, 463
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	508
LpnPI	CCDG	7 cut(s)	54, 251, 330, 357, 374, 480, 506
Lsp1109I	GCAGC	2 cut(s)	64, 364
LweI	GCATC	2 cut(s)	246, 292
MaeI	CTAG	3 cut(s)	207, 218, 450
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	365, 518
MalI	GATC	2 cut(s)	393, 465
MboI	GATC	2 cut(s)	391, 463
MboII	GAAGA	1 cut(s)	423
MflI	RGATCY	2 cut(s)	391, 463
MhlI	GDGCHC	1 cut(s)	418
MlsI	TGGCCA	1 cut(s)	72
MluCI	AATT	4 cut(s)	85, 184, 295, 400
MluNI	TGGCCA	1 cut(s)	72
MnlI	CCTC	5 cut(s)	66, 196, 263, 324, 522
Mox20I	TGGCCA	1 cut(s)	72
MroI	TCCGGA	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	72
MseI	TTAA	1 cut(s)	17
MslI	CAYNNNNRTG	2 cut(s)	360, 495
Msp20I	TGGCCA	1 cut(s)	72
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	1 cut(s)	345
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	3 cut(s)	74, 349, 422
NcoI	CCATGG	2 cut(s)	265, 395
NdeII	GATC	2 cut(s)	391, 463
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	7 cut(s)	68, 77, 269, 359, 386, 399, 500
NlaIV	GGNNCC	2 cut(s)	393, 510
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	2 cut(s)	68, 500
PaeI	GCATGC	1 cut(s)	500
PciSI	GCTCTTC	1 cut(s)	406
PdmI	GAANNNNTTC	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	79, 354
Psp1406I	AACGTT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	393, 510
PsuI	RGATCY	2 cut(s)	391, 463
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	360, 495
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	2 cut(s)	78, 353
Sau3AI	GATC	2 cut(s)	391, 463
ScaI	AGTACT	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	6 cut(s)	52, 137, 216, 227, 232, 437
SfaNI	GCATC	2 cut(s)	246, 292
SmiMI	CAYNNNNRTG	2 cut(s)	360, 495
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
SphI	GCATGC	1 cut(s)	500
Sse9I	AATT	4 cut(s)	85, 184, 295, 400
SspI	AATATT	1 cut(s)	15
SspMI	CTAG	3 cut(s)	207, 218, 450
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	265, 395
TaaI	ACNGT	3 cut(s)	159, 245, 457
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	3 cut(s)	42, 58, 322
TasI	AATT	4 cut(s)	85, 184, 295, 400
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	2 cut(s)	77, 352
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	45, 303, 353
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	2 cut(s)	295, 400
XceI	RCATGY	2 cut(s)	68, 500
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	3 cut(s)	207, 218, 450
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.