Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

44205040 .. 44207750

Gene Structure 2711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G020600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGAGGCTTATAAGAAATGGGTCAGGGAGAACAAGGACTATGTTCACTCCTTGGAGTCTCTCGCCAATGGATTCACTTGGCTTCTACCTGAACGGTTTTCTCAATCAGAGATAGCACCAGAAGCAGTAACTACTATCTTGGGAATATTAACTGCTGTCAATGAACATATAATCGACACAGCTTCTCCTCGATTACATGCTGGCCATGCTGCGTGTAATTCTTTTCCTTATCCATTGTGTATATCTGCACTAAAGGACTGGAAACGTTGGTTGAAGGTGCTAGTTAGGTTAGCTTTGTTCCGGAACAGTGGATATAAGATGCTTCTCCATGGAGGAGAGACACCAAATGATGAAAAAAATTTGGATACTTCAACTCCTCAGCGTCGAAGTGGTGGTTTTATGAAGCCTGGTGAGCAGCATGGGAATGGTCACTTGAGAAATAATCATGCACAGGATCCATGGAATTTAGAAGGAAGAGCACTATCTGCATTGAATAGGTTTGGAGAAAAGGCTAGAACTGTTTCAGATCCAGTATGGTTGCGTCGGGTTCAACACCAGCATGCCATTATGGAGCCTCCAACTCCAATGGTTGAGAGGTCGACTCTATCCTCCATATTGTCCGAAAAGGGTCTCCATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATTTATGTTTTATTTATTCGGAAATATGGAGCTCGCTCCTGGATTCCTTGGTTTCTTTCGCTGGCTGTGGACTTCACTGGAATGGGCATTCTATCTCGAATTACTTCGTCCACAGGTAGTACAAAAGAGCAGCAGTTTCATCTTTCTGTCCCTGAAAAGAATGAGGTTAAAAGACGAAAACTGTTATGGGCACTTTACCTCATGAGAGATCCATTTTTCAGCAAGTATACCAGGCGAAGACTTGAAGGCACTGAGAATATGTTGGAACATATACCAGTAGTTGGATTTCTTGCAGCAAAACTTGTTGAGCTTATTTCAGGAGCACAGACAAGGTATACTTACATGTCGGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

346

Amino Acids

39.37

Weight (kDa)

9.67

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	2 - 66	2.4e-19	Peroxisomal membrane protein (Pex16)
Pex16	PF08610	91 - 337	4.2e-54	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 671
AccB7I	CCANNNNNTGG	1 cut(s)	965
AccI	GTMKAC	3 cut(s)	599, 911, 1019
AccIII	TCCGGA	1 cut(s)	300
AclI	AACGTT	1 cut(s)	265
AclWI	GGATC	4 cut(s)	449, 462, 521, 887
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	358, 463
AfaI	GTAC	1 cut(s)	805
AfiI	CCNNNNNNNGG	1 cut(s)	965
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	5 cut(s)	274, 372, 493, 551, 929
AjnI	CCWGG	3 cut(s)	406, 722, 914
AluBI	AGCT	4 cut(s)	182, 293, 716, 994
AluI	AGCT	4 cut(s)	182, 293, 716, 994
Alw21I	GWGCWC	3 cut(s)	481, 718, 1009
Alw26I	GTCTC	3 cut(s)	63, 332, 635
AlwI	GGATC	4 cut(s)	449, 462, 521, 887
Aor13HI	TCCGGA	1 cut(s)	300
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	209, 415, 814, 977
ApoI	RAATTY	2 cut(s)	358, 463
Asp700I	GAANNNNTTC	2 cut(s)	520, 787
AsuHPI	GGTGA	1 cut(s)	422
BaeGI	GKGCMC	1 cut(s)	877
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	718
BbsI	GAAGAC	1 cut(s)	928
Bbv12I	GWGCWC	3 cut(s)	481, 718, 1009
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	4 cut(s)	196, 427, 826, 989
BciT130I	CCWGG	3 cut(s)	408, 724, 916
BciVI	GTATCC	1 cut(s)	358
BcoDI	GTCTC	3 cut(s)	63, 332, 635
BfaI	CTAG	2 cut(s)	281, 513
BfuI	GTATCC	1 cut(s)	358
BisI	GCNGC	4 cut(s)	210, 416, 815, 978
BlsI	GCNGC	4 cut(s)	211, 417, 816, 979
Bme1390I	CCNGG	3 cut(s)	408, 724, 916
BmiI	GGNNCC	2 cut(s)	456, 573
BmrFI	CCNGG	3 cut(s)	408, 724, 916
BmsI	GCATC	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	928
BplI	GAGNNNNNCTC	2 cut(s)	586, 618
Bpu10I	CCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	454
BsaI	GGTCTC	1 cut(s)	635
BsaJI	CCNNGG	5 cut(s)	51, 328, 458, 634, 731
BsaWI	WCCGGW	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	169, 199, 358, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	965
Bse1I	ACTGG	4 cut(s)	263, 530, 766, 959
BseAI	TCCGGA	1 cut(s)	300
BseBI	CCWGG	3 cut(s)	408, 724, 916
BseDI	CCNNGG	5 cut(s)	51, 328, 458, 634, 731
BseLI	CCNNNNNNNGG	1 cut(s)	965
BseMII	CTCAG	2 cut(s)	392, 927
BseNI	ACTGG	4 cut(s)	263, 530, 766, 959
BseRI	GAGGAG	3 cut(s)	177, 348, 366
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	4 cut(s)	196, 427, 826, 989
BseYI	CCCAGC	1 cut(s)	653
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	3 cut(s)	481, 718, 1009
BsiSI	CCGG	1 cut(s)	301
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	1 cut(s)	965
BsmAI	GTCTC	3 cut(s)	63, 332, 635
BsmFI	GGGAC	1 cut(s)	818
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	635
Bsp1286I	GDGCHC	4 cut(s)	481, 718, 877, 1009
Bsp13I	TCCGGA	1 cut(s)	300
Bsp143I	GATC	4 cut(s)	454, 526, 892, 1034
Bsp19I	CCATGG	3 cut(s)	328, 458, 634
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	391, 928
BspEI	TCCGGA	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	885
BspLI	GGNNCC	2 cut(s)	456, 573
BspPI	GGATC	4 cut(s)	449, 462, 521, 887
BspQI	GCTCTTC	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	635
BsrI	ACTGG	4 cut(s)	263, 530, 766, 959
BssECI	CCNNGG	5 cut(s)	51, 328, 458, 634, 731
BssMI	GATC	4 cut(s)	454, 526, 892, 1034
BssNAI	GTATAC	2 cut(s)	912, 1020
BssT1I	CCWWGG	5 cut(s)	51, 328, 458, 634, 731
Bst1107I	GTATAC	2 cut(s)	912, 1020
Bst2UI	CCWGG	3 cut(s)	408, 724, 916
Bst4CI	ACNGT	4 cut(s)	96, 308, 520, 867
Bst6I	CTCTTC	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	485
BstC8I	GCNNGC	4 cut(s)	202, 561, 718, 747
BstDEI	CTNAG	2 cut(s)	378, 936
BstDSI	CCRYGG	3 cut(s)	328, 458, 634
BstKTI	GATC	4 cut(s)	457, 529, 895, 1037
BstMAI	GTCTC	3 cut(s)	63, 332, 635
BstMBI	GATC	4 cut(s)	454, 526, 892, 1034
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 206, 412, 485
BstNI	CCWGG	3 cut(s)	408, 724, 916
BstNSI	RCATGY	3 cut(s)	200, 563, 1030
BstSCI	CCNGG	3 cut(s)	406, 722, 914
BstSLI	GKGCMC	1 cut(s)	877
BstV1I	GCAGC	4 cut(s)	196, 427, 826, 989
BstV2I	GAAGAC	1 cut(s)	928
BstX2I	RGATCY	3 cut(s)	454, 526, 892
BstYI	RGATCY	3 cut(s)	454, 526, 892
BstZ17I	GTATAC	2 cut(s)	912, 1020
BsuI	GTATCC	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	3 cut(s)	328, 458, 634
BtsIMutI	CAGTG	3 cut(s)	313, 759, 933
Cac8I	GCNNGC	4 cut(s)	202, 561, 718, 747
CciI	TCATGA	1 cut(s)	885
CseI	GACGC	2 cut(s)	371, 530
Csp6I	GTAC	1 cut(s)	804
CviQI	GTAC	1 cut(s)	804
DdeI	CTNAG	2 cut(s)	378, 936
DpnI	GATC	4 cut(s)	456, 528, 894, 1036
DpnII	GATC	4 cut(s)	454, 526, 892, 1034
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Ecl136II	GAGCTC	1 cut(s)	716
Eco130I	CCWWGG	5 cut(s)	51, 328, 458, 634, 731
Eco24I	GRGCYC	1 cut(s)	718
Eco31I	GGTCTC	1 cut(s)	635
Eco53kI	GAGCTC	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	716
EcoRII	CCWGG	3 cut(s)	406, 722, 914
EcoT14I	CCWWGG	5 cut(s)	51, 328, 458, 634, 731
EcoT38I	GRGCYC	1 cut(s)	718
ErhI	CCWWGG	5 cut(s)	51, 328, 458, 634, 731
FalI	AAGNNNNNCTT	2 cut(s)	1006, 1038
FaqI	GGGAC	1 cut(s)	818
FblI	GTMKAC	3 cut(s)	599, 911, 1019
Fnu4HI	GCNGC	4 cut(s)	210, 416, 815, 978
FriOI	GRGCYC	1 cut(s)	718
Fsp4HI	GCNGC	4 cut(s)	210, 416, 815, 978
FspBI	CTAG	2 cut(s)	281, 513
GluI	GCNGC	4 cut(s)	210, 416, 815, 978
GsaI	CCCAGC	1 cut(s)	657
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	301
HgaI	GACGC	2 cut(s)	371, 530
HincII	GTYRAC	1 cut(s)	600
HindII	GTYRAC	1 cut(s)	600
HinfI	GANTC	4 cut(s)	56, 72, 601, 727
HpaII	CCGG	1 cut(s)	301
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	6 cut(s)	46, 600, 754, 795, 912, 1020
Hpy188I	TCNGA	4 cut(s)	109, 526, 622, 705
Hpy188III	TCNNGA	5 cut(s)	301, 780, 886, 1002, 1032
Hpy8I	GTNNAC	6 cut(s)	46, 600, 754, 795, 912, 1020
Hpy99I	CGWCG	2 cut(s)	387, 546
HpyAV	CCTTC	3 cut(s)	268, 464, 923
HpyCH4III	ACNGT	4 cut(s)	96, 308, 520, 867
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	4 cut(s)	248, 449, 488, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 206, 412, 485
HpyF3I	CTNAG	2 cut(s)	378, 936
HpySE526I	ACGT	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	300
Kzo9I	GATC	4 cut(s)	454, 526, 892, 1034
LguI	GCTCTTC	1 cut(s)	469
LmnI	GCTCC	4 cut(s)	571, 713, 725, 1004
Lsp1109I	GCAGC	4 cut(s)	196, 427, 826, 989
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	281, 513
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	127, 428
MalI	GATC	4 cut(s)	456, 528, 894, 1036
MboI	GATC	4 cut(s)	454, 526, 892, 1034
MboII	GAAGA	2 cut(s)	486, 933
MflI	RGATCY	3 cut(s)	454, 526, 892
MhlI	GDGCHC	4 cut(s)	481, 718, 877, 1009
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	4 cut(s)	217, 358, 463, 783
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	65, 595
MmeI	TCCRAC	3 cut(s)	602, 927, 946
MnlI	CCTC	8 cut(s)	198, 326, 387, 585, 588, 619, 841, 893
Mox20I	TGGCCA	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	300
MroXI	GAANNNNTTC	2 cut(s)	520, 787
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	149, 852
MslI	CAYNNNNRTG	3 cut(s)	423, 558, 764
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	408, 724, 916
Mva1269I	GAATGC	1 cut(s)	771
MvaI	CCWGG	3 cut(s)	408, 724, 916
MwoI	GCNNNNNNNGC	4 cut(s)	122, 206, 412, 485
NcoI	CCATGG	3 cut(s)	328, 458, 634
NdeII	GATC	4 cut(s)	454, 526, 892, 1034
NlaIV	GGNNCC	2 cut(s)	456, 573
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	3 cut(s)	200, 563, 1030
PaeI	GCATGC	1 cut(s)	563
PagI	TCATGA	1 cut(s)	885
PciI	ACATGT	1 cut(s)	1026
PciSI	GCTCTTC	1 cut(s)	469
PctI	GAATGC	1 cut(s)	771
PdmI	GAANNNNTTC	2 cut(s)	520, 787
PfeI	GAWTC	2 cut(s)	72, 727
PflMI	CCANNNNNTGG	1 cut(s)	965
PfoI	TCCNGGA	1 cut(s)	722
PkrI	GCNGC	4 cut(s)	211, 417, 816, 979
PleI	GAGTC	2 cut(s)	64, 595
PpsI	GAGTC	2 cut(s)	64, 595
PscI	ACATGT	1 cut(s)	1026
PsiI	TTATAA	2 cut(s)	12, 671
Psp124BI	GAGCTC	1 cut(s)	718
Psp1406I	AACGTT	1 cut(s)	265
Psp6I	CCWGG	3 cut(s)	406, 722, 914
PspFI	CCCAGC	1 cut(s)	653
PspGI	CCWGG	3 cut(s)	406, 722, 914
PspN4I	GGNNCC	2 cut(s)	456, 573
PsuI	RGATCY	3 cut(s)	454, 526, 892
RsaI	GTAC	1 cut(s)	805
RsaNI	GTAC	1 cut(s)	804
RseI	CAYNNNNRTG	3 cut(s)	423, 558, 764
SacI	GAGCTC	1 cut(s)	718
SalI	GTCGAC	1 cut(s)	598
SapI	GCTCTTC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	149, 852
SatI	GCNGC	4 cut(s)	210, 416, 815, 978
Sau3AI	GATC	4 cut(s)	454, 526, 892, 1034
SchI	GAGTC	2 cut(s)	65, 595
ScrFI	CCNGG	3 cut(s)	408, 724, 916
SduI	GDGCHC	4 cut(s)	481, 718, 877, 1009
SfaNI	GCATC	1 cut(s)	309
SmiMI	CAYNNNNRTG	3 cut(s)	423, 558, 764
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	4 cut(s)	217, 358, 463, 783
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	2 cut(s)	281, 513
SstI	GAGCTC	1 cut(s)	718
StyD4I	CCNGG	3 cut(s)	406, 722, 914
StyI	CCWWGG	5 cut(s)	51, 328, 458, 634, 731
TaaI	ACNGT	4 cut(s)	96, 308, 520, 867
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	5 cut(s)	174, 190, 385, 599, 781
TasI	AATT	4 cut(s)	217, 358, 463, 783
TatI	WGTACW	1 cut(s)	803
TfiI	GAWTC	2 cut(s)	72, 727
Tru1I	TTAA	2 cut(s)	149, 852
Tru9I	TTAA	2 cut(s)	149, 852
TscAI	CASTG	3 cut(s)	313, 766, 940
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	4 cut(s)	209, 415, 814, 977
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	4 cut(s)	177, 366, 416, 812
TspRI	CASTG	3 cut(s)	313, 766, 940
Van91I	CCANNNNNTGG	1 cut(s)	965
XapI	RAATTY	2 cut(s)	358, 463
XceI	RCATGY	3 cut(s)	200, 563, 1030
XmiI	GTMKAC	3 cut(s)	599, 911, 1019
XmnI	GAANNNNTTC	2 cut(s)	520, 787
XspI	CTAG	2 cut(s)	281, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.