Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

11602342 .. 11606778

Gene Structure 4437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12840.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGAGGCTTACAAGAGATGGGTCAGGGAGAACAAGGAGTATGTCCACTCTTTGGAGTCTCTCGCCAATGGAATTACATGGCTTCTACCCGAACGGTTTTCTGAATCAGAGATAGGACCAGAAGCAGTAACAAGTATCTTGGGAATAATAACTGCTGTCAACGAACATATAATCGACACAGCTCCTCCTCGATTACATGTTGGCCATGCTGAGCGTAATTCTTTACCTTATCCATTGTGTATATCTGCACTAAAAGACTTGGAAACGTTGGTTGAAGTTGCGGCTCAACATTACTTTGGTGATGAGAAAAAATGGAATTACATTGCTATTATGGAGGCTAGCAAGGTGCTAGTTAAGTTAGCTTTGTTCCAGAACAGTGGATATAAGATGCTTCTTCATGGAGGACAGACACCAAATGATGAAAAAACTTTGGAGGCTTCAACTCCTCAGCGTAGAACTGGTGGTTTATTGAAGCCTGGCGAGCAGCTTGGGAATGGTCACTTGAGAAATAATCATGCGCAGGATCCATGGAATTTAGAAGGAAGAGCACTGTCTGCATTGAATAGGTTTGGAGAAAGGGCTAGGAGTGTTTCAGATCCAGAATGGTTGCATAGGGTTCAACACCATCATGCGATTATGGAGCCGCCAATGGTTGAGAGGTCGACTCTATCCTCCTTAATATCCAAAAAGGGTCTCAATGGGGCTTTGTATGTGGCTGGGGAAGTGCTATTTATAACAAGACCACTTATCTATGTTTTATTTATTCGGAAATATGGAGCTCGCTCCTGGATTCCTTGGTTTCTTTCACTGGCTGTGGACTTCACTGGAATGGGCATTCTTTCTCGAATTACTTCGTCCACAGGTGGTACAGAAGAGCAGCAGTTTCATCTTTCTGTTCCTGAGAAGAATGAGGTTAAAAGACGAAAGCTGTTATGGGCACTTTACCTCATGAGAGATCCATTTTTCAGCAAGTATACAAGGGGAAGACTTGAACGTACTGAGGATATGTTGGGACATATACCTGTTGTTGGATTTCTCGCAGGAAAACTTGTTGAGCTTCTTTCAGGAGCACAGACAAGGTATACTTACATGTCAGGATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

368

Amino Acids

41.49

Weight (kDa)

8.95

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	2 - 231	2.8e-45	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	734
Acc16I	TGCGCA	1 cut(s)	519
AccB7I	CCANNNNNTGG	1 cut(s)	52
AccI	GTMKAC	3 cut(s)	662, 974, 1082
AciI	CCGC	2 cut(s)	281, 644
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	4 cut(s)	518, 531, 590, 950
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	532
AfaI	GTAC	2 cut(s)	868, 997
AfiI	CCNNNNNNNGG	2 cut(s)	52, 1028
AflIII	ACRYGT	2 cut(s)	196, 1089
AgsI	TTSAA	6 cut(s)	275, 441, 472, 562, 620, 992
AjnI	CCWGG	2 cut(s)	475, 785
AluBI	AGCT	6 cut(s)	182, 362, 487, 779, 928, 1057
AluI	AGCT	6 cut(s)	182, 362, 487, 779, 928, 1057
Alw21I	GWGCWC	3 cut(s)	550, 781, 1072
Alw26I	GTCTC	2 cut(s)	63, 698
AlwI	GGATC	4 cut(s)	518, 531, 590, 950
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	2 cut(s)	484, 877
ApoI	RAATTY	1 cut(s)	532
Asp700I	GAANNNNTTC	1 cut(s)	850
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	311
AsuNHI	GCTAGC	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	116
BaeGI	GKGCMC	1 cut(s)	940
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	781
BbsI	GAAGAC	1 cut(s)	991
Bbv12I	GWGCWC	3 cut(s)	550, 781, 1072
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	2 cut(s)	496, 889
BccI	CCATC	2 cut(s)	12, 633
BciT130I	CCWGG	2 cut(s)	477, 787
BcoDI	GTCTC	2 cut(s)	63, 698
BfaI	CTAG	3 cut(s)	339, 350, 582
BisI	GCNGC	4 cut(s)	282, 485, 644, 878
BlpI	GCTNAGC	1 cut(s)	210
BlsI	GCNGC	4 cut(s)	283, 486, 645, 879
Bme1390I	CCNGG	2 cut(s)	477, 787
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	525, 642
BmrFI	CCNGG	2 cut(s)	477, 787
BmsI	GCATC	1 cut(s)	378
BmtI	GCTAGC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	991
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
Bpu10I	CCTNAGC	1 cut(s)	447
Bpu1102I	GCTNAGC	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	527, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 1028
Bse1I	ACTGG	3 cut(s)	463, 813, 829
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	477, 787
BseDI	CCNNGG	2 cut(s)	527, 794
BseLI	CCNNNNNNNGG	2 cut(s)	52, 1028
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	4 cut(s)	201, 461, 891, 990
BseNI	ACTGG	3 cut(s)	463, 813, 829
BseRI	GAGGAG	3 cut(s)	174, 177, 435
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	2 cut(s)	496, 889
BseYI	CCCAGC	1 cut(s)	716
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	3 cut(s)	550, 781, 1072
BslFI	GGGAC	1 cut(s)	1026
BslI	CCNNNNNNNGG	2 cut(s)	52, 1028
BsmAI	GTCTC	2 cut(s)	63, 698
BsmFI	GGGAC	1 cut(s)	1026
BsmI	GAATGC	1 cut(s)	834
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	698
Bsp1286I	GDGCHC	4 cut(s)	550, 781, 940, 1072
Bsp143I	GATC	4 cut(s)	523, 595, 955, 1097
Bsp1720I	GCTNAGC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	527
BspACI	CCGC	2 cut(s)	281, 644
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	4 cut(s)	202, 460, 892, 991
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	2 cut(s)	525, 642
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	4 cut(s)	518, 531, 590, 950
BspQI	GCTCTTC	2 cut(s)	538, 867
BspTNI	GGTCTC	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	463, 813, 829
BssECI	CCNNGG	2 cut(s)	527, 794
BssMI	GATC	4 cut(s)	523, 595, 955, 1097
BssNAI	GTATAC	2 cut(s)	975, 1083
BssT1I	CCWWGG	2 cut(s)	527, 794
Bst1107I	GTATAC	2 cut(s)	975, 1083
Bst2UI	CCWGG	2 cut(s)	477, 787
Bst4CI	ACNGT	3 cut(s)	96, 377, 552
Bst6I	CTCTTC	2 cut(s)	538, 867
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	340, 482, 781
BstDEI	CTNAG	4 cut(s)	210, 447, 900, 999
BstDSI	CCRYGG	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	4 cut(s)	526, 598, 958, 1100
BstMAI	GTCTC	2 cut(s)	63, 698
BstMBI	GATC	4 cut(s)	523, 595, 955, 1097
BstMWI	GCNNNNNNNGC	2 cut(s)	481, 554
BstNI	CCWGG	2 cut(s)	477, 787
BstNSI	RCATGY	2 cut(s)	200, 1093
BstSCI	CCNGG	2 cut(s)	475, 785
BstSLI	GKGCMC	1 cut(s)	940
BstV1I	GCAGC	2 cut(s)	496, 889
BstV2I	GAAGAC	1 cut(s)	991
BstX2I	RGATCY	3 cut(s)	523, 595, 955
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	3 cut(s)	523, 595, 955
BstZ17I	GTATAC	2 cut(s)	975, 1083
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	527
BtsIMutI	CAGTG	4 cut(s)	382, 548, 806, 822
Cac8I	GCNNGC	3 cut(s)	340, 482, 781
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	867, 996
CviAII	CATG	9 cut(s)	78, 197, 206, 398, 515, 528, 629, 949, 1090
CviQI	GTAC	2 cut(s)	867, 996
DdeI	CTNAG	4 cut(s)	210, 447, 900, 999
DpnI	GATC	4 cut(s)	525, 597, 957, 1099
DpnII	GATC	4 cut(s)	523, 595, 955, 1097
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	2 cut(s)	538, 867
EarI	CTCTTC	2 cut(s)	538, 867
Ecl136II	GAGCTC	1 cut(s)	779
Eco130I	CCWWGG	2 cut(s)	527, 794
Eco24I	GRGCYC	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	698
Eco47I	GGWCC	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	779
EcoRII	CCWGG	2 cut(s)	475, 785
EcoT14I	CCWWGG	2 cut(s)	527, 794
EcoT38I	GRGCYC	1 cut(s)	781
ErhI	CCWWGG	2 cut(s)	527, 794
FaeI	CATG	9 cut(s)	81, 200, 209, 401, 518, 531, 632, 952, 1093
FalI	AAGNNNNNCTT	2 cut(s)	1069, 1101
FaqI	GGGAC	1 cut(s)	1026
FatI	CATG	9 cut(s)	77, 196, 205, 397, 514, 527, 628, 948, 1089
FblI	GTMKAC	3 cut(s)	662, 974, 1082
Fnu4HI	GCNGC	4 cut(s)	282, 485, 644, 878
FriOI	GRGCYC	1 cut(s)	781
Fsp4HI	GCNGC	4 cut(s)	282, 485, 644, 878
FspBI	CTAG	3 cut(s)	339, 350, 582
FspI	TGCGCA	1 cut(s)	519
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	4 cut(s)	282, 485, 644, 878
GsaI	CCCAGC	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	204
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	9 cut(s)	81, 200, 209, 401, 518, 531, 632, 952, 1093
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HincII	GTYRAC	2 cut(s)	160, 663
HindII	GTYRAC	2 cut(s)	160, 663
HinfI	GANTC	4 cut(s)	56, 104, 664, 790
HphI	GGTGA	1 cut(s)	311
Hpy166II	GTNNAC	7 cut(s)	46, 160, 663, 817, 858, 975, 1083
Hpy188I	TCNGA	4 cut(s)	103, 109, 595, 768
Hpy188III	TCNNGA	7 cut(s)	370, 599, 843, 899, 949, 1065, 1095
Hpy8I	GTNNAC	7 cut(s)	46, 160, 663, 817, 858, 975, 1083
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	3 cut(s)	96, 377, 552
HpyCH4IV	ACGT	2 cut(s)	266, 994
HpyCH4V	TGCA	3 cut(s)	248, 557, 610
HpyF10VI	GCNNNNNNNGC	2 cut(s)	481, 554
HpyF3I	CTNAG	4 cut(s)	210, 447, 900, 999
HpySE526I	ACGT	2 cut(s)	266, 994
Hsp92II	CATG	9 cut(s)	81, 200, 209, 401, 518, 531, 632, 952, 1093
HspAI	GCGC	1 cut(s)	518
Kzo9I	GATC	4 cut(s)	523, 595, 955, 1097
LguI	GCTCTTC	2 cut(s)	538, 867
LmnI	GCTCC	5 cut(s)	187, 640, 776, 788, 1067
Lsp1109I	GCAGC	2 cut(s)	496, 889
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	3 cut(s)	339, 350, 582
MaeII	ACGT	2 cut(s)	266, 994
MaeIII	GTNAC	2 cut(s)	127, 497
MalI	GATC	4 cut(s)	525, 597, 957, 1099
MboI	GATC	4 cut(s)	523, 595, 955, 1097
MboII	GAAGA	5 cut(s)	386, 555, 884, 916, 996
MflI	RGATCY	3 cut(s)	523, 595, 955
MhlI	GDGCHC	4 cut(s)	550, 781, 940, 1072
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	72, 217, 316, 532, 846
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	65, 658
MmeI	TCCRAC	1 cut(s)	1009
Mox20I	TGGCCA	1 cut(s)	204
MroXI	GAANNNNTTC	1 cut(s)	850
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	3 cut(s)	354, 677, 915
MslI	CAYNNNNRTG	2 cut(s)	627, 827
Msp20I	TGGCCA	1 cut(s)	204
MspR9I	CCNGG	2 cut(s)	477, 787
Mva1269I	GAATGC	1 cut(s)	834
MvaI	CCWGG	2 cut(s)	477, 787
MwoI	GCNNNNNNNGC	2 cut(s)	481, 554
NcoI	CCATGG	1 cut(s)	527
NdeII	GATC	4 cut(s)	523, 595, 955, 1097
NheI	GCTAGC	1 cut(s)	338
NlaIII	CATG	9 cut(s)	81, 200, 209, 401, 518, 531, 632, 952, 1093
NlaIV	GGNNCC	2 cut(s)	525, 642
NmuCI	GTSAC	1 cut(s)	497
NsbI	TGCGCA	1 cut(s)	519
NspI	RCATGY	2 cut(s)	200, 1093
PagI	TCATGA	1 cut(s)	948
PciI	ACATGT	2 cut(s)	196, 1089
PciSI	GCTCTTC	2 cut(s)	538, 867
PctI	GAATGC	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	850
PfeI	GAWTC	2 cut(s)	104, 790
PflMI	CCANNNNNTGG	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	785
PkrI	GCNGC	4 cut(s)	283, 486, 645, 879
PleI	GAGTC	2 cut(s)	64, 658
PpsI	GAGTC	2 cut(s)	64, 658
PscI	ACATGT	2 cut(s)	196, 1089
PsiI	TTATAA	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	781
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	475, 785
PspFI	CCCAGC	1 cut(s)	716
PspGI	CCWGG	2 cut(s)	475, 785
PspN4I	GGNNCC	2 cut(s)	525, 642
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	3 cut(s)	523, 595, 955
RsaI	GTAC	2 cut(s)	868, 997
RsaNI	GTAC	2 cut(s)	867, 996
RseI	CAYNNNNRTG	2 cut(s)	627, 827
SacI	GAGCTC	1 cut(s)	781
SalI	GTCGAC	1 cut(s)	661
SapI	GCTCTTC	2 cut(s)	538, 867
SaqAI	TTAA	3 cut(s)	354, 677, 915
SatI	GCNGC	4 cut(s)	282, 485, 644, 878
Sau3AI	GATC	4 cut(s)	523, 595, 955, 1097
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	65, 658
ScrFI	CCNGG	2 cut(s)	477, 787
SduI	GDGCHC	4 cut(s)	550, 781, 940, 1072
SfaNI	GCATC	1 cut(s)	378
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	627, 827
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
Sse9I	AATT	5 cut(s)	72, 217, 316, 532, 846
SsiI	CCGC	2 cut(s)	281, 644
SspMI	CTAG	3 cut(s)	339, 350, 582
SstI	GAGCTC	1 cut(s)	781
StyD4I	CCNGG	2 cut(s)	475, 785
StyI	CCWWGG	2 cut(s)	527, 794
TaaI	ACNGT	3 cut(s)	96, 377, 552
TaiI	ACGT	2 cut(s)	269, 997
TaqI	TCGA	4 cut(s)	174, 190, 662, 844
TasI	AATT	5 cut(s)	72, 217, 316, 532, 846
TauI	GCSGC	2 cut(s)	284, 646
TfiI	GAWTC	2 cut(s)	104, 790
Tru1I	TTAA	3 cut(s)	354, 677, 915
Tru9I	TTAA	3 cut(s)	354, 677, 915
TscAI	CASTG	4 cut(s)	382, 555, 813, 829
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	484, 877
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	386, 435, 875
TspRI	CASTG	4 cut(s)	382, 555, 813, 829
Van91I	CCANNNNNTGG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	532
XceI	RCATGY	2 cut(s)	200, 1093
XmiI	GTMKAC	3 cut(s)	662, 974, 1082
XmnI	GAANNNNTTC	1 cut(s)	850
XspI	CTAG	3 cut(s)	339, 350, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.