pycom07g11860

Peroxisome biogenesis protein 16-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
13156170 .. 13159093
2924 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g11860.8

Sequence Viewer

Length: 1110 bp
ATGGAGGCCTATAAGAAATGGGTTAGGGAGAACAGGGACTATGTGCACTCCTTGGAGTCTCTGGCCAATGGGCTCACGTGGCTTCTACCTGAACGGTTTTCTGAATCGGAGATAGGACCAGAAGCAGTAACTACTCTGTTGGGAATAACAACTGCTATCAATGAACATATAATTGCTACATCTCCTACTTCAATGCATGTTGGCTCTACTGAGGGTTACTCTTTTCCGTATGCGTTGTGTATATCTGCACTGAAAGATTTGGAAACGTTGGTTGAAGTTGTGGGTCAACAGTATTTTGGTGATGAAAAAAAATGGAATTTCATTGCTATTACGGAGGCTATGAAGGTGCTAGTTAGGTTAGCTTTGTTCCGCAATAATGGATATAAGATGCTGCTGCATGGTGGAGAGACACCAAATGATGAAATGCATGTGGAAGCTTCAACTCCTCAACGTAACATAGGTGGTTTTACGAAGCCTGGATTGCAGCTTGGGCCTGGTTACTTAAGAAATAATCATGGACAGTACTCATGCAATTTAGAAGGAAGAGCACTATCCACATTGAATAGATTTGGAGAAAATGCTAGGATGGTTTCGGAACCAGTATGGTTACGTAGGGTTCAACACCAGCAAGCAATTATGGAGCCTCCAACTCCAGTGGTTGAGAAGTTGACCCTATCCACCTTATTGTCCGAAAAAAGTCTTCGAGGGGCTTTTTATGTGTTTGGGGAAGCTCTATTTATAACAAGACCACTTATCTATGTGTTATTTATTCGAAAGTATGGAGTTCGCTCATGGATTCCTTGGTTTCTTTCTCTGGCTGTTGACTTCACTGGGATGGGCATTCTTTCACGAATTGAATCATCCAGGGATGGTACAAAAGAGCAGCACTTTCATCTTTCTGTCGCTGAAAAGAACGAGGTTAAAAGACGAAAGCTGTTATGGGCACTGTACCTCATGAGAGATCCATTTTTTAGCAAGTATACCAGGCAAAAACTCGAAAGCGCTGAGAAAGTGTTGGAACCTGTACCTATTGTTGGGTTTCTAACAGCCAAACTTGTCGAGCTTCTTATCGGAGCTCAGACAAGGTATACCTACATGTCGGGATCATAA

Protein Analysis

370

Amino Acids

41.92

Weight (kDa)

8.84

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 740
AccI GTMKAC 2 cut(s) 980, 1088
AciI CCGC 1 cut(s) 370
AclI AACGTT 1 cut(s) 266
AclWI GGATC 1 cut(s) 956
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 316
AcvI CACGTG 1 cut(s) 78
AfaI GTAC 4 cut(s) 524, 874, 950, 1026
AfeI AGCGCT 1 cut(s) 1003
AfiI CCNNNNNNNGG 1 cut(s) 1034
AflII CTTAAG 1 cut(s) 502
AflIII ACRYGT 1 cut(s) 1095
AgsI TTSAA 6 cut(s) 192, 275, 441, 562, 620, 857
AjnI CCWGG 4 cut(s) 475, 493, 863, 983
AluBI AGCT 7 cut(s) 362, 437, 487, 731, 934, 1063, 1076
AluI AGCT 7 cut(s) 362, 437, 487, 731, 934, 1063, 1076
Alw21I GWGCWC 3 cut(s) 48, 550, 1078
Alw26I GTCTC 2 cut(s) 63, 401
Alw44I GTGCAC 1 cut(s) 44
AlwI GGATC 1 cut(s) 956
Aor51HI AGCGCT 1 cut(s) 1003
AoxI GGCC 3 cut(s) 6, 63, 491
ApaLI GTGCAC 1 cut(s) 44
ApeKI GCWGC 4 cut(s) 391, 394, 484, 883
ApoI RAATTY 1 cut(s) 316
AspLEI GCGC 1 cut(s) 1004
AspS9I GGNCC 2 cut(s) 116, 491
AsuHPI GGTGA 1 cut(s) 311
AsuII TTCGAA 1 cut(s) 772
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 2 cut(s) 48, 946
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 2 cut(s) 75, 1078
BbrPI CACGTG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 692
Bbv12I GWGCWC 3 cut(s) 48, 550, 1078
BbvI GCAGC 4 cut(s) 378, 381, 496, 895
BccI CCATC 3 cut(s) 580, 829, 863
BciT130I CCWGG 4 cut(s) 477, 495, 865, 985
BcoDI GTCTC 2 cut(s) 63, 401
BfaI CTAG 2 cut(s) 350, 582
BfoI RGCGCY 1 cut(s) 1005
BfrI CTTAAG 1 cut(s) 502
BisI GCNGC 4 cut(s) 392, 395, 485, 884
BlsI GCNGC 4 cut(s) 393, 396, 486, 885
BmcAI AGTACT 1 cut(s) 524
Bme1390I CCNGG 4 cut(s) 477, 495, 865, 985
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 116, 491
BmiI GGNNCC 3 cut(s) 597, 642, 1020
BmrFI CCNGG 4 cut(s) 477, 495, 865, 985
BmrI ACTGGG 1 cut(s) 840
BmsI GCATC 1 cut(s) 378
BmuI ACTGGG 1 cut(s) 840
BpiI GAAGAC 1 cut(s) 692
BplI GAGNNNNNCTC 2 cut(s) 203, 235
BpmI CTGGAG 1 cut(s) 636
Bpu14I TTCGAA 1 cut(s) 772
BsaAI YACGTR 2 cut(s) 78, 611
BsaJI CCNNGG 3 cut(s) 51, 800, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 1034
Bse1I ACTGG 3 cut(s) 599, 653, 835
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 4 cut(s) 477, 495, 865, 985
BseDI CCNNGG 3 cut(s) 51, 800, 864
BseGI GGATG 4 cut(s) 591, 840, 860, 874
BseLI CCNNNNNNNGG 1 cut(s) 1034
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 201, 996, 1091
BseNI ACTGG 3 cut(s) 599, 653, 835
BseRI GAGGAG 1 cut(s) 435
BseSI GKGCMC 2 cut(s) 48, 946
BseXI GCAGC 4 cut(s) 378, 381, 496, 895
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 3 cut(s) 8, 65, 493
BsiHKAI GWGCWC 3 cut(s) 48, 550, 1078
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 1034
BsmAI GTCTC 2 cut(s) 63, 401
BsmFI GGGAC 1 cut(s) 50
BsmI GAATGC 1 cut(s) 840
BsnI GGCC 3 cut(s) 8, 65, 493
Bsp119I TTCGAA 1 cut(s) 772
Bsp1286I GDGCHC 5 cut(s) 48, 75, 550, 946, 1078
Bsp143I GATC 2 cut(s) 961, 1103
BspACI CCGC 1 cut(s) 370
BspANI GGCC 3 cut(s) 8, 65, 493
BspCNI CTCAG 3 cut(s) 202, 997, 1090
BspHI TCATGA 1 cut(s) 954
BspLI GGNNCC 3 cut(s) 597, 642, 1020
BspPI GGATC 1 cut(s) 956
BspQI GCTCTTC 1 cut(s) 538
BspT104I TTCGAA 1 cut(s) 772
BspTI CTTAAG 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 3 cut(s) 599, 653, 835
BssECI CCNNGG 3 cut(s) 51, 800, 864
BssMI GATC 2 cut(s) 961, 1103
BssNAI GTATAC 2 cut(s) 981, 1089
BssT1I CCWWGG 2 cut(s) 51, 800
Bst1107I GTATAC 2 cut(s) 981, 1089
Bst2UI CCWGG 4 cut(s) 477, 495, 865, 985
Bst4CI ACNGT 4 cut(s) 96, 291, 522, 948
Bst6I CTCTTC 1 cut(s) 538
BstAFI CTTAAG 1 cut(s) 502
BstBAI YACGTR 2 cut(s) 78, 611
BstBI TTCGAA 1 cut(s) 772
BstC8I GCNNGC 1 cut(s) 630
BstDEI CTNAG 3 cut(s) 210, 1005, 1077
BstF5I GGATG 4 cut(s) 591, 840, 860, 874
BstH2I RGCGCY 1 cut(s) 1005
BstHHI GCGC 1 cut(s) 1004
BstKTI GATC 2 cut(s) 964, 1106
BstMAI GTCTC 2 cut(s) 63, 401
BstMBI GATC 2 cut(s) 961, 1103
BstMWI GCNNNNNNNGC 3 cut(s) 79, 481, 490
BstNI CCWGG 4 cut(s) 477, 495, 865, 985
BstNSI RCATGY 3 cut(s) 200, 431, 1099
BstSCI CCNGG 4 cut(s) 475, 493, 863, 983
BstSLI GKGCMC 2 cut(s) 48, 946
BstSNI TACGTA 1 cut(s) 611
BstV1I GCAGC 4 cut(s) 378, 381, 496, 895
BstV2I GAAGAC 1 cut(s) 692
BstX2I RGATCY 1 cut(s) 961
BstYI RGATCY 1 cut(s) 961
BstZ17I GTATAC 2 cut(s) 981, 1089
BsuRI GGCC 3 cut(s) 8, 65, 493
BtsCI GGATG 4 cut(s) 591, 840, 860, 874
BtsIMutI CAGTG 4 cut(s) 248, 660, 828, 944
Cac8I GCNNGC 1 cut(s) 630
CciI TCATGA 1 cut(s) 954
CfoI GCGC 1 cut(s) 1004
Cfr13I GGNCC 2 cut(s) 116, 491
Csp6I GTAC 4 cut(s) 523, 873, 949, 1025
CspCI CAANNNNNGTGG 2 cut(s) 636, 671
CviAII CATG 8 cut(s) 197, 398, 428, 515, 528, 792, 955, 1096
CviQI GTAC 4 cut(s) 523, 873, 949, 1025
DdeI CTNAG 3 cut(s) 210, 1005, 1077
DpnI GATC 2 cut(s) 963, 1105
DpnII GATC 2 cut(s) 961, 1103
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 538
Ecl136II GAGCTC 1 cut(s) 1076
Eco105I TACGTA 1 cut(s) 611
Eco130I CCWWGG 2 cut(s) 51, 800
Eco147I AGGCCT 1 cut(s) 8
Eco24I GRGCYC 2 cut(s) 75, 1078
Eco47I GGWCC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 1003
Eco53kI GAGCTC 1 cut(s) 1076
Eco72I CACGTG 1 cut(s) 78
EcoICRI GAGCTC 1 cut(s) 1076
EcoRII CCWGG 4 cut(s) 475, 493, 863, 983
EcoT14I CCWWGG 2 cut(s) 51, 800
EcoT22I ATGCAT 2 cut(s) 198, 429
EcoT38I GRGCYC 2 cut(s) 75, 1078
ErhI CCWWGG 2 cut(s) 51, 800
FaeI CATG 8 cut(s) 200, 401, 431, 518, 531, 795, 958, 1099
FaqI GGGAC 1 cut(s) 50
FatI CATG 8 cut(s) 196, 397, 427, 514, 527, 791, 954, 1095
FblI GTMKAC 2 cut(s) 980, 1088
Fnu4HI GCNGC 4 cut(s) 392, 395, 485, 884
FokI GGATG 4 cut(s) 598, 847, 847, 881
FriOI GRGCYC 2 cut(s) 75, 1078
Fsp4HI GCNGC 4 cut(s) 392, 395, 485, 884
FspBI CTAG 2 cut(s) 350, 582
GlaI GCGC 1 cut(s) 1003
GluI GCNGC 4 cut(s) 392, 395, 485, 884
GsuI CTGGAG 1 cut(s) 636
HaeII RGCGCY 1 cut(s) 1005
HaeIII GGCC 3 cut(s) 8, 65, 493
HhaI GCGC 1 cut(s) 1004
Hin1II CATG 8 cut(s) 200, 401, 431, 518, 531, 795, 958, 1099
Hin6I GCGC 1 cut(s) 1002
HinP1I GCGC 1 cut(s) 1002
HincII GTYRAC 3 cut(s) 287, 669, 823
HindII GTYRAC 3 cut(s) 287, 669, 823
HindIII AAGCTT 1 cut(s) 435
HinfI GANTC 4 cut(s) 56, 104, 796, 857
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 6 cut(s) 46, 287, 669, 823, 981, 1089
Hpy188I TCNGA 6 cut(s) 103, 109, 595, 691, 1073, 1080
Hpy188III TCNNGA 3 cut(s) 849, 955, 1101
Hpy8I GTNNAC 6 cut(s) 46, 287, 669, 823, 981, 1089
HpyAV CCTTC 2 cut(s) 337, 533
HpyCH4III ACNGT 4 cut(s) 96, 291, 522, 948
HpyCH4IV ACGT 4 cut(s) 77, 266, 451, 610
HpyCH4V TGCA 7 cut(s) 46, 196, 248, 397, 427, 484, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 481, 490
HpyF3I CTNAG 3 cut(s) 210, 1005, 1077
HpySE526I ACGT 4 cut(s) 77, 266, 451, 610
Hsp92II CATG 8 cut(s) 200, 401, 431, 518, 531, 795, 958, 1099
HspAI GCGC 1 cut(s) 1002
Kzo9I GATC 2 cut(s) 961, 1103
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 2 cut(s) 640, 1073
Lsp1109I GCAGC 4 cut(s) 378, 381, 496, 895
LweI GCATC 1 cut(s) 378
MaeI CTAG 2 cut(s) 350, 582
MaeII ACGT 4 cut(s) 77, 266, 451, 610
MaeIII GTNAC 5 cut(s) 127, 215, 452, 497, 606
MalI GATC 2 cut(s) 963, 1105
MboI GATC 2 cut(s) 961, 1103
MboII GAAGA 2 cut(s) 555, 692
MflI RGATCY 1 cut(s) 961
MhlI GDGCHC 5 cut(s) 48, 75, 550, 946, 1078
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 171, 316, 532, 633, 852
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 671, 996
MnlI CCTC 7 cut(s) 205, 328, 456, 654, 698, 910, 962
Mox20I TGGCCA 1 cut(s) 65
Mph1103I ATGCAT 2 cut(s) 198, 429
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 503, 921
MslI CAYNNNNRTG 1 cut(s) 833
Msp20I TGGCCA 1 cut(s) 65
MspCI CTTAAG 1 cut(s) 502
MspR9I CCNGG 4 cut(s) 477, 495, 865, 985
Mva1269I GAATGC 1 cut(s) 840
MvaI CCWGG 4 cut(s) 477, 495, 865, 985
MwoI GCNNNNNNNGC 3 cut(s) 79, 481, 490
NdeII GATC 2 cut(s) 961, 1103
NlaIII CATG 8 cut(s) 200, 401, 431, 518, 531, 795, 958, 1099
NlaIV GGNNCC 3 cut(s) 597, 642, 1020
NsiI ATGCAT 2 cut(s) 198, 429
NspI RCATGY 3 cut(s) 200, 431, 1099
NspV TTCGAA 1 cut(s) 772
PagI TCATGA 1 cut(s) 954
PceI AGGCCT 1 cut(s) 8
PciI ACATGT 1 cut(s) 1095
PciSI GCTCTTC 1 cut(s) 538
PctI GAATGC 1 cut(s) 840
PfeI GAWTC 3 cut(s) 104, 796, 857
PkrI GCNGC 4 cut(s) 393, 396, 486, 885
PleI GAGTC 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 78
PmlI CACGTG 1 cut(s) 78
PpsI GAGTC 1 cut(s) 64
Ppu21I YACGTR 2 cut(s) 78, 611
PscI ACATGT 1 cut(s) 1095
PsiI TTATAA 1 cut(s) 740
Psp124BI GAGCTC 1 cut(s) 1078
Psp1406I AACGTT 1 cut(s) 266
Psp6I CCWGG 4 cut(s) 475, 493, 863, 983
PspCI CACGTG 1 cut(s) 78
PspGI CCWGG 4 cut(s) 475, 493, 863, 983
PspN4I GGNNCC 3 cut(s) 597, 642, 1020
PspPI GGNCC 2 cut(s) 116, 491
PsuI RGATCY 1 cut(s) 961
RsaI GTAC 4 cut(s) 524, 874, 950, 1026
RsaNI GTAC 4 cut(s) 523, 873, 949, 1025
RseI CAYNNNNRTG 1 cut(s) 833
SacI GAGCTC 1 cut(s) 1078
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 2 cut(s) 503, 921
SatI GCNGC 4 cut(s) 392, 395, 485, 884
Sau3AI GATC 2 cut(s) 961, 1103
Sau96I GGNCC 2 cut(s) 116, 491
ScaI AGTACT 1 cut(s) 524
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 4 cut(s) 477, 495, 865, 985
SduI GDGCHC 5 cut(s) 48, 75, 550, 946, 1078
SfaNI GCATC 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 772
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 502
SmoI CTYRAG 1 cut(s) 502
SnaBI TACGTA 1 cut(s) 611
Sse9I AATT 5 cut(s) 171, 316, 532, 633, 852
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 370
SspMI CTAG 2 cut(s) 350, 582
SstI GAGCTC 1 cut(s) 1078
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 475, 493, 863, 983
StyI CCWWGG 2 cut(s) 51, 800
TaaI ACNGT 4 cut(s) 96, 291, 522, 948
TaiI ACGT 4 cut(s) 80, 269, 454, 613
TaqI TCGA 4 cut(s) 703, 772, 996, 1059
TasI AATT 5 cut(s) 171, 316, 532, 633, 852
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 3 cut(s) 104, 796, 857
Tru1I TTAA 2 cut(s) 503, 921
Tru9I TTAA 2 cut(s) 503, 921
TscAI CASTG 4 cut(s) 255, 660, 835, 951
TseI GCWGC 4 cut(s) 391, 394, 484, 883
TspDTI ATGAA 6 cut(s) 177, 310, 318, 356, 435, 881
TspGWI ACGGA 2 cut(s) 216, 347
TspRI CASTG 4 cut(s) 255, 660, 835, 951
Vha464I CTTAAG 1 cut(s) 502
VneI GTGCAC 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 316
XceI RCATGY 3 cut(s) 200, 431, 1099
XmiI GTMKAC 2 cut(s) 980, 1088
XspI CTAG 2 cut(s) 350, 582
ZrmI AGTACT 1 cut(s) 524
Zsp2I ATGCAT 2 cut(s) 198, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.