MD02G1195700.v1.1

Peroxisome biogenesis protein 16-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
18731547 .. 18734664
3118 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1195700.v1.1.491

Sequence Viewer

Length: 1104 bp
ATGGGGAAGCTTTGGGGTGTATTGTGGGATGCTATGGAGGCTTACAAGAAATGGGTTAGGGAGAATCAAGACTTTGTCCACTCATTGGAGTCCCTGGCCAATGAATTCACGTGGCTTCTACCTGGACGGTTTTCTGAATCGGAGATAGGACCAGAAGCAGTAACTACTCTCCTGGGAATAATAACCGCTATCAACGAACATATAATCAACACAGATCCTCCTTCAGTGCATGATGGCGCTGCCGAGGGTTATTCTTGTCCGTATGCATTGTGTATATCTGCACTAAGGTATTTGGAAACGTTGGTTGAAGTAGTAGCTCAAGAGTATCTTGGTGATGAGAAGAAATGGAATTTCATTGCTATTATGGAGGCTATGAATGCTCTGGTTAGGTTAGCTTTGTTCCGGAACAGTGGATATAAGATGCTTCTGCATGGAGGAGAGACACTAAATGATGAAACGGATTTGGAAGCTTCAACTCCTCAATGTAAAATTGGCGGATTGACAAAGCCTGGAGAGCAGCTTGGGCCTGGTTACTTAAGAAATAATAATCATCGACAGGGTGCATTGAATTCAGAAGGAAGAGCATTATCTGCATTGAGTGGGTTTGGAGAAAATCCTAGGATGGTTTCAGAACCAGTATGGTTGCATAGGGTTCAACAGCAGCACGCGAGTATGGAGCCTCCAACTCCATTGGTTGAGAGGTTAACCCTGTCCACGTTATGGTCTGAAAAATGTTTTCATGGGGCGTTTTATGTTTTTGGGGAAGTGCTATTTATAACGAGGCCACTGATGTATGTTTTATTTATTCGAAAATGTGGAATTCGCTCATGGATTCCTTGGCTTCTTTCTCTGGCTATGGACTTCACTGGGATGCGCATCCTTTCCCGAATTTCTTCATCCAGGGGTGGTACAAAAGCGCCGCAGTTTCATCTCTCCGTCTCTGAAAAGGATGAGGTTAGAAGACGAAAGCTGTTATGGGCACTTTACGCGATGAGAGATCCATTTTATACCAGATTCATAAGCAGCCAAGAAGAAAGCAAAAGTGGAGCTAAAACCTCAAGCTTCTTCTCTAACAAGTACAGTTTCTTTAGTCAGCGTTTGTAA

Protein Analysis

368

Amino Acids

41.61

Weight (kDa)

7.12

Isoelectric Point (pI)

40.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pex16 PF08610 13 - 341 1e-76 Peroxisomal membrane protein (Pex16)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 776
Acc16I TGCGCA 1 cut(s) 875
AccB7I CCANNNNNTGG 2 cut(s) 85, 720
AccII CGCG 2 cut(s) 668, 989
AccIII TCCGGA 1 cut(s) 402
AciI CCGC 3 cut(s) 186, 495, 920
AclI AACGTT 1 cut(s) 299
AclWI GGATC 2 cut(s) 209, 992
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 5 cut(s) 104, 349, 568, 819, 888
AcuI CTGAAG 1 cut(s) 207
AcvI CACGTG 1 cut(s) 111
AfaI GTAC 2 cut(s) 910, 1079
AfiI CCNNNNNNNGG 2 cut(s) 85, 720
AflII CTTAAG 1 cut(s) 535
AgsI TTSAA 4 cut(s) 308, 474, 568, 656
AjnI CCWGG 6 cut(s) 93, 121, 171, 508, 526, 899
AluBI AGCT 8 cut(s) 10, 317, 395, 470, 520, 970, 1049, 1062
AluI AGCT 8 cut(s) 10, 317, 395, 470, 520, 970, 1049, 1062
Alw26I GTCTC 2 cut(s) 434, 943
AlwI GGATC 2 cut(s) 209, 992
Aor13HI TCCGGA 1 cut(s) 402
AoxI GGCC 3 cut(s) 96, 524, 782
ApeKI GCWGC 4 cut(s) 239, 517, 661, 1023
ApoI RAATTY 5 cut(s) 104, 349, 568, 819, 888
Asp700I GAANNNNTTC 1 cut(s) 892
AspA2I CCTAGG 1 cut(s) 617
AspLEI GCGC 3 cut(s) 239, 876, 919
AspS9I GGNCC 2 cut(s) 149, 524
AsuHPI GGTGA 1 cut(s) 344
AsuII TTCGAA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 149
AvrII CCTAGG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 982
BalI TGGCCA 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 967
BbvI GCAGC 4 cut(s) 226, 529, 673, 1035
BccI CCATC 2 cut(s) 227, 616
BciT130I CCWGG 6 cut(s) 95, 123, 173, 510, 528, 901
BcoDI GTCTC 2 cut(s) 434, 943
BfaI CTAG 1 cut(s) 618
BfoI RGCGCY 2 cut(s) 240, 920
BfrI CTTAAG 1 cut(s) 535
BisI GCNGC 5 cut(s) 240, 518, 662, 920, 1024
BlnI CCTAGG 1 cut(s) 617
BlsI GCNGC 5 cut(s) 241, 519, 663, 921, 1025
Bme1390I CCNGG 6 cut(s) 95, 123, 173, 510, 528, 901
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 2 cut(s) 149, 524
BmiI GGNNCC 1 cut(s) 678
BmrFI CCNGG 6 cut(s) 95, 123, 173, 510, 528, 901
BmrI ACTGGG 1 cut(s) 876
BmsI GCATC 4 cut(s) 19, 411, 861, 885
BmuI ACTGGG 1 cut(s) 876
BpiI GAAGAC 1 cut(s) 967
BpmI CTGGAG 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 808
BpuEI CTTGAG 2 cut(s) 303, 1042
BsaAI YACGTR 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 875
BsaJI CCNNGG 6 cut(s) 93, 172, 243, 617, 836, 900
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 720
Bse1I ACTGG 2 cut(s) 635, 871
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 875
BseAI TCCGGA 1 cut(s) 402
BseBI CCWGG 6 cut(s) 95, 123, 173, 510, 528, 901
BseDI CCNNGG 6 cut(s) 93, 172, 243, 617, 836, 900
BseGI GGATG 6 cut(s) 34, 627, 876, 876, 896, 955
BseJI GATNNNNATC 1 cut(s) 875
BseLI CCNNNNNNNGG 2 cut(s) 85, 720
BseMI GCAATG 1 cut(s) 354
BseNI ACTGG 2 cut(s) 635, 871
BseRI GAGGAG 2 cut(s) 450, 468
BseSI GKGCMC 1 cut(s) 982
BseXI GCAGC 4 cut(s) 226, 529, 673, 1035
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 2 cut(s) 668, 989
BshFI GGCC 3 cut(s) 98, 526, 784
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 85, 720
BsmAI GTCTC 2 cut(s) 434, 943
BsmBI CGTCTC 1 cut(s) 943
BsmFI GGGAC 1 cut(s) 76
BsmI GAATGC 1 cut(s) 382
BsnI GGCC 3 cut(s) 98, 526, 784
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 982
Bsp13I TCCGGA 1 cut(s) 402
Bsp143I GATC 2 cut(s) 214, 997
BspACI CCGC 3 cut(s) 186, 495, 920
BspANI GGCC 3 cut(s) 98, 526, 784
BspEI TCCGGA 1 cut(s) 402
BspFNI CGCG 2 cut(s) 668, 989
BspLI GGNNCC 1 cut(s) 678
BspPI GGATC 2 cut(s) 209, 992
BspQI GCTCTTC 1 cut(s) 574
BspT104I TTCGAA 1 cut(s) 808
BspTI CTTAAG 1 cut(s) 535
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 635, 871
BssECI CCNNGG 6 cut(s) 93, 172, 243, 617, 836, 900
BssMI GATC 2 cut(s) 214, 997
BssT1I CCWWGG 2 cut(s) 617, 836
Bst2UI CCWGG 6 cut(s) 95, 123, 173, 510, 528, 901
Bst4CI ACNGT 3 cut(s) 129, 410, 1082
Bst6I CTCTTC 1 cut(s) 574
BstAFI CTTAAG 1 cut(s) 535
BstAPI GCANNNNNTGC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 111
BstBI TTCGAA 1 cut(s) 808
BstC8I GCNNGC 1 cut(s) 666
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 6 cut(s) 34, 627, 876, 876, 896, 955
BstFNI CGCG 2 cut(s) 668, 989
BstH2I RGCGCY 2 cut(s) 240, 920
BstHHI GCGC 3 cut(s) 239, 876, 919
BstKTI GATC 2 cut(s) 217, 1000
BstMAI GTCTC 2 cut(s) 434, 943
BstMBI GATC 2 cut(s) 214, 997
BstMWI GCNNNNNNNGC 6 cut(s) 38, 377, 514, 523, 590, 986
BstNI CCWGG 6 cut(s) 95, 123, 173, 510, 528, 901
BstSCI CCNGG 6 cut(s) 93, 121, 171, 508, 526, 899
BstSLI GKGCMC 1 cut(s) 982
BstUI CGCG 2 cut(s) 668, 989
BstV1I GCAGC 4 cut(s) 226, 529, 673, 1035
BstV2I GAAGAC 1 cut(s) 967
BstX2I RGATCY 2 cut(s) 214, 997
BstYI RGATCY 2 cut(s) 214, 997
BsuRI GGCC 3 cut(s) 98, 526, 784
BtgZI GCGATG 1 cut(s) 1004
BtsCI GGATG 6 cut(s) 34, 627, 876, 876, 896, 955
BtsIMutI CAGTG 4 cut(s) 231, 415, 785, 864
Cac8I GCNNGC 1 cut(s) 666
CfoI GCGC 3 cut(s) 239, 876, 919
Cfr13I GGNCC 2 cut(s) 149, 524
Csp6I GTAC 2 cut(s) 909, 1078
CviAII CATG 4 cut(s) 230, 431, 740, 828
CviQI GTAC 2 cut(s) 909, 1078
DdeI CTNAG 1 cut(s) 284
DpnI GATC 2 cut(s) 216, 999
DpnII GATC 2 cut(s) 214, 997
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 574
EarI CTCTTC 1 cut(s) 574
EciI GGCGGA 1 cut(s) 510
Eco130I CCWWGG 2 cut(s) 617, 836
Eco47I GGWCC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 207
Eco72I CACGTG 1 cut(s) 111
EcoRI GAATTC 3 cut(s) 104, 568, 819
EcoRII CCWGG 6 cut(s) 93, 121, 171, 508, 526, 899
EcoT14I CCWWGG 2 cut(s) 617, 836
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 2 cut(s) 617, 836
Esp3I CGTCTC 1 cut(s) 943
FaeI CATG 4 cut(s) 233, 434, 743, 831
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FaqI GGGAC 1 cut(s) 76
FatI CATG 4 cut(s) 229, 430, 739, 827
Fnu4HI GCNGC 5 cut(s) 240, 518, 662, 920, 1024
FokI GGATG 6 cut(s) 41, 634, 863, 883, 883, 962
Fsp4HI GCNGC 5 cut(s) 240, 518, 662, 920, 1024
FspAI RTGCGCAY 1 cut(s) 875
FspBI CTAG 1 cut(s) 618
FspI TGCGCA 1 cut(s) 875
GlaI GCGC 3 cut(s) 238, 875, 918
GluI GCNGC 5 cut(s) 240, 518, 662, 920, 1024
GsuI CTGGAG 1 cut(s) 531
HaeII RGCGCY 2 cut(s) 240, 920
HaeIII GGCC 3 cut(s) 98, 526, 784
HapII CCGG 1 cut(s) 403
HhaI GCGC 3 cut(s) 239, 876, 919
Hin1II CATG 4 cut(s) 233, 434, 743, 831
Hin6I GCGC 3 cut(s) 237, 874, 917
HinP1I GCGC 3 cut(s) 237, 874, 917
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HindIII AAGCTT 3 cut(s) 8, 468, 1060
HinfI GANTC 5 cut(s) 64, 89, 137, 832, 1014
HpaI GTTAAC 1 cut(s) 705
HpaII CCGG 1 cut(s) 403
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 3 cut(s) 79, 705, 714
Hpy188I TCNGA 6 cut(s) 136, 142, 574, 631, 727, 943
Hpy188III TCNNGA 4 cut(s) 68, 320, 403, 885
Hpy8I GTNNAC 3 cut(s) 79, 705, 714
HpyAV CCTTC 2 cut(s) 231, 569
HpyCH4III ACNGT 3 cut(s) 129, 410, 1082
HpyCH4IV ACGT 3 cut(s) 110, 299, 716
HpyCH4V TGCA 7 cut(s) 229, 266, 281, 430, 563, 593, 646
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 377, 514, 523, 590, 986
HpyF3I CTNAG 1 cut(s) 284
HpySE526I ACGT 3 cut(s) 110, 299, 716
Hsp92II CATG 4 cut(s) 233, 434, 743, 831
HspAI GCGC 3 cut(s) 237, 874, 917
Kpn2I TCCGGA 1 cut(s) 402
KspAI GTTAAC 1 cut(s) 705
Kzo9I GATC 2 cut(s) 214, 997
LguI GCTCTTC 1 cut(s) 574
LmnI GCTCC 2 cut(s) 676, 1046
Lsp1109I GCAGC 4 cut(s) 226, 529, 673, 1035
LweI GCATC 4 cut(s) 19, 411, 861, 885
MaeI CTAG 1 cut(s) 618
MaeII ACGT 3 cut(s) 110, 299, 716
MaeIII GTNAC 2 cut(s) 160, 530
MalI GATC 2 cut(s) 216, 999
MboI GATC 2 cut(s) 214, 997
MboII GAAGA 6 cut(s) 352, 591, 885, 972, 1043, 1057
MflI RGATCY 2 cut(s) 214, 997
MhlI GDGCHC 1 cut(s) 982
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 6 cut(s) 104, 349, 489, 568, 819, 888
MluNI TGGCCA 1 cut(s) 98
MlyI GAGTC 1 cut(s) 98
MmeI TCCRAC 1 cut(s) 707
Mox20I TGGCCA 1 cut(s) 98
Mph1103I ATGCAT 1 cut(s) 268
MroI TCCGGA 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 892
MscI TGGCCA 1 cut(s) 98
MseI TTAA 2 cut(s) 536, 704
MslI CAYNNNNRTG 1 cut(s) 869
Msp20I TGGCCA 1 cut(s) 98
MspCI CTTAAG 1 cut(s) 535
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 6 cut(s) 95, 123, 173, 510, 528, 901
Mva1269I GAATGC 1 cut(s) 382
MvaI CCWGG 6 cut(s) 95, 123, 173, 510, 528, 901
MvnI CGCG 2 cut(s) 668, 989
MwoI GCNNNNNNNGC 6 cut(s) 38, 377, 514, 523, 590, 986
NdeII GATC 2 cut(s) 214, 997
NlaIII CATG 4 cut(s) 233, 434, 743, 831
NlaIV GGNNCC 1 cut(s) 678
NmeAIII GCCGAG 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 875
NsiI ATGCAT 1 cut(s) 268
NspV TTCGAA 1 cut(s) 808
PciSI GCTCTTC 1 cut(s) 574
PctI GAATGC 1 cut(s) 382
PdmI GAANNNNTTC 1 cut(s) 892
PfeI GAWTC 4 cut(s) 64, 137, 832, 1014
PflFI GACNNNGTC 1 cut(s) 74
PflMI CCANNNNNTGG 2 cut(s) 85, 720
PkrI GCNGC 5 cut(s) 241, 519, 663, 921, 1025
PleI GAGTC 1 cut(s) 97
PmaCI CACGTG 1 cut(s) 111
PmlI CACGTG 1 cut(s) 111
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 111
PsiI TTATAA 1 cut(s) 776
Psp1406I AACGTT 1 cut(s) 299
Psp6I CCWGG 6 cut(s) 93, 121, 171, 508, 526, 899
PspCI CACGTG 1 cut(s) 111
PspGI CCWGG 6 cut(s) 93, 121, 171, 508, 526, 899
PspN4I GGNNCC 1 cut(s) 678
PspPI GGNCC 2 cut(s) 149, 524
PsuI RGATCY 2 cut(s) 214, 997
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 2 cut(s) 910, 1079
RsaNI GTAC 2 cut(s) 909, 1078
RseI CAYNNNNRTG 1 cut(s) 869
SapI GCTCTTC 1 cut(s) 574
SaqAI TTAA 2 cut(s) 536, 704
SatI GCNGC 5 cut(s) 240, 518, 662, 920, 1024
Sau3AI GATC 2 cut(s) 214, 997
Sau96I GGNCC 2 cut(s) 149, 524
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 6 cut(s) 95, 123, 173, 510, 528, 901
SduI GDGCHC 1 cut(s) 982
SfaNI GCATC 4 cut(s) 19, 411, 861, 885
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 1 cut(s) 149
SmiMI CAYNNNNRTG 1 cut(s) 869
SmlI CTYRAG 3 cut(s) 318, 535, 1057
SmoI CTYRAG 3 cut(s) 318, 535, 1057
Sse9I AATT 6 cut(s) 104, 349, 489, 568, 819, 888
SsiI CCGC 3 cut(s) 186, 495, 920
SspMI CTAG 1 cut(s) 618
StyD4I CCNGG 6 cut(s) 93, 121, 171, 508, 526, 899
StyI CCWWGG 2 cut(s) 617, 836
TaaI ACNGT 3 cut(s) 129, 410, 1082
TaiI ACGT 3 cut(s) 113, 302, 719
TaqI TCGA 2 cut(s) 553, 808
TasI AATT 6 cut(s) 104, 349, 489, 568, 819, 888
TatI WGTACW 1 cut(s) 1077
TauI GCSGC 1 cut(s) 922
TfiI GAWTC 4 cut(s) 64, 137, 832, 1014
Tru1I TTAA 2 cut(s) 536, 704
Tru9I TTAA 2 cut(s) 536, 704
TscAI CASTG 4 cut(s) 231, 415, 792, 871
TseI GCWGC 4 cut(s) 239, 517, 661, 1023
TspDTI ATGAA 8 cut(s) 117, 343, 389, 468, 728, 885, 917, 1006
TspGWI ACGGA 3 cut(s) 249, 473, 925
TspRI CASTG 4 cut(s) 231, 415, 792, 871
Tth111I GACNNNGTC 1 cut(s) 74
Van91I CCANNNNNTGG 2 cut(s) 85, 720
Vha464I CTTAAG 1 cut(s) 535
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 5 cut(s) 104, 349, 568, 819, 888
XmaJI CCTAGG 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 892
XspI CTAG 1 cut(s) 618
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.