Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

45056826 .. 45058757

Gene Structure 1932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGGGCATTCTATCTCAAATTACTTCGTACACAGGTGGTACAAAAGAGCAGCAGTTTAATCTTTCTGTCCCTGAAAAGAATGAGGTTAAAAGACGAAAACTGTTATGGGCACTTTACCTCATGAGAGATCCATTTTTCAGCAAGTATACCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

51

Amino Acids

6.07

Weight (kDa)

9.99

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pex16	PF08610	11 - 51	3e-10	Peroxisomal membrane protein (Pex16)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	122
AfaI	GTAC	2 cut(s)	29, 40
AjnI	CCWGG	1 cut(s)	149
AlwI	GGATC	1 cut(s)	122
ApeKI	GCWGC	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	112
BbvI	GCAGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	151
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	151
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	53
BsmFI	GGGAC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	1 cut(s)	127
BspHI	TCATGA	1 cut(s)	120
BspPI	GGATC	1 cut(s)	122
BssMI	GATC	1 cut(s)	127
BssNAI	GTATAC	1 cut(s)	147
Bst1107I	GTATAC	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	1 cut(s)	102
BstKTI	GATC	1 cut(s)	130
BstMBI	GATC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZ17I	GTATAC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	28, 39
CviAII	CATG	1 cut(s)	121
CviQI	GTAC	2 cut(s)	28, 39
DpnI	GATC	1 cut(s)	129
DpnII	GATC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	149
FaeI	CATG	1 cut(s)	124
FaiI	YATR	3 cut(s)	106, 122, 147
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	1 cut(s)	120
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	50
GluI	GCNGC	1 cut(s)	50
Hin1II	CATG	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	30, 147
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	2 cut(s)	30, 147
HpyCH4III	ACNGT	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	127
LpnPI	CCDG	3 cut(s)	18, 84, 136
Lsp1109I	GCAGC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	149
MalI	GATC	1 cut(s)	129
MboI	GATC	1 cut(s)	127
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	1 cut(s)	18
MnlI	CCTC	2 cut(s)	76, 128
MseI	TTAA	2 cut(s)	57, 87
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	127
NlaIII	CATG	1 cut(s)	124
PagI	TCATGA	1 cut(s)	120
PctI	GAATGC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PsuI	RGATCY	1 cut(s)	127
RsaI	GTAC	2 cut(s)	29, 40
RsaNI	GTAC	2 cut(s)	28, 39
SaqAI	TTAA	2 cut(s)	57, 87
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	4 cut(s)	37, 87, 120, 155
SexAI	ACCWGGT	1 cut(s)	149
SgeI	CNNG	3 cut(s)	45, 83, 133
Sse9I	AATT	1 cut(s)	18
StyD4I	CCNGG	1 cut(s)	149
TaaI	ACNGT	1 cut(s)	102
TasI	AATT	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	57, 87
Tru9I	TTAA	2 cut(s)	57, 87
TseI	GCWGC	1 cut(s)	49
XmiI	GTMKAC	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.