Rorug01G0222800

Peroxisome biogenesis protein 16-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
32010904 .. 32012258
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0222800.1

Sequence Viewer

Length: 1203 bp
ATGGCGGACGGCGGCGGCGGCTTTCATAAGCGAGCTCTTACCAGTGTCACCGACCTCGACGGCGCCCTTGATGAAATACTGGCAAGGCTACCGGTCAAAACTTTGATGCGATTTCGCTGCTTCTGCAAGCCATGGCGTGCTCTCATCTCCCAGTCTCACTTTGTCACCAAGCACTTCAACTACGCAAGCAAAGGCTTCACCGAGAACACCTCCAGGCTCTTGATATCAATGAGTCCCGTCAGATACTGTGAAGCATCCAAGGATTTGTCCCTTGACTGTGAAGCATTGAAGGACTTGATGGATGATGGAGATGCTCATCTTGCAATTAGAAAGCTCGAGTTTCCGGTAATGTTCCCTGATTCAAGTATTAGAAAAATTGTGTGTTCTTGCAATGGGCTGATTTGTGTAGAAATTGACCAGAAAGACATGGTGTTATGGAACCCTTGTACTGGACAATCCAATTTGTTACCAAAACCTACTGATCATTGCATTCCGCAGTTTCGCAGATTTGGTTTTGATCTCACTAAGCAGTTTTGCGGATTTGGTTATGATTCCACTAGTGATGATTATAAGGTAGTGAGAGGGTACAATTATAGAGTTGAGGGTTCTGAGGAAACCGTGGTTCAGGTCTTTAGTTTAAAATCCGGGTCATGGAGGACCCATAAGGGTCTTAGTTACTTTTGCGTGGTAGGGCCAGGGTGCTTGTTAAATGGTGCTCTGCATTGGGCAGATACCACATTGAATGATTTTCGTCCAACAGATTCAAGGACTATCTCTTTTGATTTAGCAGAGGAAAAGTTTCAGGAGATGATTCCATTGCCCTCTCAGGCTGGTTTTAGATACAGCTTTATTCCTGAAGATTGTCGTGGTGTATATACATATGGCCTTCTACACAAAGAAATCATCAGGCTTACAATATGGGTGATGAAGGAATATGGGGTCCAGGATTCGTGGACTGAAGTTGCTTCTTTAGATATTTTACCTGAAGATTGTCAATTCTCACTCGTGATGCCTCTGCGCATATTAGCGAATGGTGAAGGTTTTATCGCCGAGAGTTGTGATTTTCAGTCCTTGGTATTATATAGCTTCAAGGAACAGACATTTAGGAATGTTGTTAGGGCCGACAACAAATGCCAATTTGATTCAGTCATTTACAGGGAGACTTTAGTTTCACCAGTCACCAGTGGTATTGCAGACATTTAA

Protein Analysis

400

Amino Acids

45.3

Weight (kDa)

5.58

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 54 7.8e-06 F-box domain
FBA_3 PF08268 113 - 375 1.7e-21 F-box associated beta propeller domain
FBA_1 PF07734 125 - 351 1.2e-27 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 570
Acc16I TGCGCA 1 cut(s) 1019
AccB1I GGYRCC 1 cut(s) 62
AciI CCGC 6 cut(s) 5, 12, 15, 18, 494, 537
AcuI CTGAAG 3 cut(s) 876, 978, 1005
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 2 cut(s) 448, 587
AfiI CCNNNNNNNGG 2 cut(s) 449, 651
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 6 cut(s) 178, 289, 363, 742, 765, 1090
AhlI ACTAGT 1 cut(s) 557
AjnI CCWGG 3 cut(s) 212, 694, 942
AluBI AGCT 4 cut(s) 35, 334, 846, 1086
AluI AGCT 4 cut(s) 35, 334, 846, 1086
Alw21I GWGCWC 3 cut(s) 37, 142, 718
Alw26I GTCTC 2 cut(s) 159, 1154
AlwNI CAGNNNCTG 1 cut(s) 246
Ama87I CYCGRG 1 cut(s) 335
AoxI GGCC 3 cut(s) 692, 883, 1119
ApeKI GCWGC 1 cut(s) 117
AsiGI ACCGGT 1 cut(s) 91
Asp700I GAANNNNTTC 1 cut(s) 798
AspLEI GCGC 2 cut(s) 65, 1020
AspS9I GGNCC 4 cut(s) 657, 692, 940, 1119
AsuC2I CCSGG 1 cut(s) 646
AsuHPI GGTGA 7 cut(s) 40, 157, 190, 934, 1046, 1164, 1171
AvaI CYCGRG 1 cut(s) 335
AvaII GGWCC 2 cut(s) 657, 940
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 37
BauI CACGAG 1 cut(s) 1004
Bbv12I GWGCWC 3 cut(s) 37, 142, 718
BbvI GCAGC 1 cut(s) 104
BccI CCATC 2 cut(s) 292, 299
BceAI ACGGC 2 cut(s) 25, 76
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 3 cut(s) 214, 696, 944
BclI TGATCA 1 cut(s) 481
BcnI CCSGG 1 cut(s) 646
BcoDI GTCTC 2 cut(s) 159, 1154
BcuI ACTAGT 1 cut(s) 557
BfaI CTAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 4 cut(s) 13, 16, 19, 118
BlsI GCNGC 4 cut(s) 14, 17, 20, 119
Bme1390I CCNGG 4 cut(s) 214, 646, 696, 944
Bme18I GGWCC 2 cut(s) 657, 940
BmeT110I CYCGRG 1 cut(s) 335
BmgT120I GGNCC 4 cut(s) 657, 692, 940, 1119
BmiI GGNNCC 4 cut(s) 64, 440, 659, 941
BmrFI CCNGG 4 cut(s) 214, 646, 696, 944
BmrI ACTGGG 1 cut(s) 145
BmsI GCATC 4 cut(s) 96, 263, 301, 999
BmuI ACTGGG 1 cut(s) 145
BplI GAGNNNNNCTC 2 cut(s) 194, 226
BpmI CTGGAG 1 cut(s) 196
BpuMI CCSGG 1 cut(s) 646
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 5 cut(s) 131, 258, 618, 695, 1071
BsaWI WCCGGW 2 cut(s) 91, 343
Bsc4I CCNNNNNNNGG 2 cut(s) 449, 651
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 6 cut(s) 42, 84, 151, 454, 1175, 1182
Bse3DI GCAATG 3 cut(s) 397, 484, 815
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 3 cut(s) 214, 696, 944
BseDI CCNNGG 5 cut(s) 131, 258, 618, 695, 1071
BseGI GGATG 2 cut(s) 254, 307
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 449, 651
BseMI GCAATG 3 cut(s) 397, 484, 815
BseMII CTCAG 2 cut(s) 600, 839
BseNI ACTGG 6 cut(s) 42, 84, 151, 454, 1175, 1182
BseXI GCAGC 1 cut(s) 104
BshFI GGCC 3 cut(s) 694, 885, 1121
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 91
BsiHKAI GWGCWC 3 cut(s) 37, 142, 718
BsiHKCI CYCGRG 1 cut(s) 335
BsiSI CCGG 3 cut(s) 92, 344, 645
BslFI GGGAC 2 cut(s) 219, 253
BslI CCNNNNNNNGG 2 cut(s) 449, 651
BsmAI GTCTC 2 cut(s) 159, 1154
BsmFI GGGAC 2 cut(s) 219, 253
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 3 cut(s) 694, 885, 1121
BsoBI CYCGRG 1 cut(s) 335
Bsp1286I GDGCHC 3 cut(s) 37, 142, 718
Bsp143I GATC 2 cut(s) 481, 517
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 6 cut(s) 5, 12, 15, 18, 494, 537
BspANI GGCC 3 cut(s) 694, 885, 1121
BspCNI CTCAG 2 cut(s) 601, 838
BspLI GGNNCC 4 cut(s) 64, 440, 659, 941
BspT107I GGYRCC 1 cut(s) 62
BsrDI GCAATG 3 cut(s) 397, 484, 815
BsrFI RCCGGY 1 cut(s) 91
BsrI ACTGG 6 cut(s) 42, 84, 151, 454, 1175, 1182
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 5 cut(s) 131, 258, 618, 695, 1071
BssMI GATC 2 cut(s) 481, 517
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 1004
BssT1I CCWWGG 3 cut(s) 131, 258, 1071
Bst2BI CACGAG 1 cut(s) 1004
Bst2UI CCWGG 3 cut(s) 214, 696, 944
Bst4CI ACNGT 3 cut(s) 248, 278, 619
BstACI GRCGYC 1 cut(s) 63
BstC8I GCNNGC 4 cut(s) 33, 128, 138, 187
BstDEI CTNAG 4 cut(s) 525, 609, 671, 825
BstDSI CCRYGG 2 cut(s) 131, 618
BstF5I GGATG 2 cut(s) 254, 307
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 2 cut(s) 65, 1020
BstKTI GATC 2 cut(s) 484, 520
BstMAI GTCTC 2 cut(s) 159, 1154
BstMBI GATC 2 cut(s) 481, 517
BstMWI GCNNNNNNNGC 3 cut(s) 18, 123, 320
BstNI CCWGG 3 cut(s) 214, 696, 944
BstSCI CCNGG 4 cut(s) 212, 644, 694, 942
BstV1I GCAGC 1 cut(s) 104
BsuRI GGCC 3 cut(s) 694, 885, 1121
BtgI CCRYGG 2 cut(s) 131, 618
BtsCI GGATG 2 cut(s) 254, 307
BtsIMutI CAGTG 2 cut(s) 49, 1189
Cac8I GCNNGC 4 cut(s) 33, 128, 138, 187
CaiI CAGNNNCTG 1 cut(s) 246
CfoI GCGC 2 cut(s) 65, 1020
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 4 cut(s) 657, 692, 940, 1119
Csp6I GTAC 2 cut(s) 447, 586
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 3 cut(s) 132, 427, 651
CviQI GTAC 2 cut(s) 447, 586
DdeI CTNAG 4 cut(s) 525, 609, 671, 825
DinI GGCGCC 1 cut(s) 64
DpnI GATC 2 cut(s) 483, 519
DpnII GATC 2 cut(s) 481, 517
DraI TTTAAA 1 cut(s) 639
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 35
Eco130I CCWWGG 3 cut(s) 131, 258, 1071
Eco24I GRGCYC 1 cut(s) 37
Eco32I GATATC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 657, 940
Eco53kI GAGCTC 1 cut(s) 35
Eco57I CTGAAG 3 cut(s) 876, 978, 1005
Eco88I CYCGRG 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 657
EcoRII CCWGG 3 cut(s) 212, 694, 942
EcoRV GATATC 1 cut(s) 225
EcoT14I CCWWGG 3 cut(s) 131, 258, 1071
EcoT38I GRGCYC 1 cut(s) 37
EgeI GGCGCC 1 cut(s) 64
EheI GGCGCC 1 cut(s) 64
ErhI CCWWGG 3 cut(s) 131, 258, 1071
FaeI CATG 3 cut(s) 135, 430, 654
FaqI GGGAC 2 cut(s) 219, 253
FatI CATG 3 cut(s) 131, 426, 650
FauNDI CATATG 1 cut(s) 880
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 4 cut(s) 13, 16, 19, 118
FokI GGATG 2 cut(s) 241, 314
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 4 cut(s) 13, 16, 19, 118
FspBI CTAG 1 cut(s) 558
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 2 cut(s) 64, 1019
GluI GCNGC 4 cut(s) 13, 16, 19, 118
GsuI CTGGAG 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 3 cut(s) 694, 885, 1121
HapII CCGG 3 cut(s) 92, 344, 645
HhaI GCGC 2 cut(s) 65, 1020
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 3 cut(s) 135, 430, 654
Hin6I GCGC 2 cut(s) 63, 1018
HinP1I GCGC 2 cut(s) 63, 1018
HinfI GANTC 7 cut(s) 232, 359, 551, 761, 811, 947, 1142
HpaII CCGG 3 cut(s) 92, 344, 645
HphI GGTGA 7 cut(s) 40, 157, 190, 934, 1046, 1164, 1171
Hpy166II GTNNAC 1 cut(s) 954
Hpy188I TCNGA 2 cut(s) 242, 610
Hpy188III TCNNGA 4 cut(s) 220, 803, 854, 1006
Hpy8I GTNNAC 1 cut(s) 954
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 4 cut(s) 283, 896, 922, 1031
HpyCH4III ACNGT 3 cut(s) 248, 278, 619
HpyCH4V TGCA 6 cut(s) 126, 323, 390, 489, 721, 1193
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 123, 320
HpyF3I CTNAG 4 cut(s) 525, 609, 671, 825
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 3 cut(s) 135, 430, 654
HspAI GCGC 2 cut(s) 63, 1018
KasI GGCGCC 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 2 cut(s) 481, 517
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 4 cut(s) 96, 263, 301, 999
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 5 cut(s) 46, 163, 465, 674, 1177
MalI GATC 2 cut(s) 483, 519
MboI GATC 2 cut(s) 481, 517
MboII GAAGA 2 cut(s) 869, 998
MhlI GDGCHC 3 cut(s) 37, 142, 718
MluCI AATT 7 cut(s) 324, 375, 411, 460, 589, 995, 1136
Mly113I GGCGCC 1 cut(s) 63
MlyI GAGTC 1 cut(s) 241
MmeI TCCRAC 1 cut(s) 779
MnlI CCTC 9 cut(s) 65, 220, 575, 595, 604, 648, 784, 832, 1023
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 3 cut(s) 638, 707, 1201
MspI CCGG 3 cut(s) 92, 344, 645
MspR9I CCNGG 4 cut(s) 214, 646, 696, 944
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 3 cut(s) 214, 696, 944
MwoI GCNNNNNNNGC 3 cut(s) 18, 123, 320
NarI GGCGCC 1 cut(s) 63
NciI CCSGG 1 cut(s) 646
NcoI CCATGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 880
NdeII GATC 2 cut(s) 481, 517
NlaIII CATG 3 cut(s) 135, 430, 654
NlaIV GGNNCC 4 cut(s) 64, 440, 659, 941
NmeAIII GCCGAG 1 cut(s) 1075
NmuCI GTSAC 3 cut(s) 46, 163, 1177
NsbI TGCGCA 1 cut(s) 1019
PaeR7I CTCGAG 1 cut(s) 335
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 6 cut(s) 359, 551, 761, 811, 947, 1142
PfoI TCCNGGA 1 cut(s) 942
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 4 cut(s) 14, 17, 20, 119
PleI GAGTC 1 cut(s) 240
PluTI GGCGCC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 240
PpuMI RGGWCCY 1 cut(s) 657
PsiI TTATAA 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 37
Psp5II RGGWCCY 1 cut(s) 657
Psp6I CCWGG 3 cut(s) 212, 694, 942
PspGI CCWGG 3 cut(s) 212, 694, 942
PspN4I GGNNCC 4 cut(s) 64, 440, 659, 941
PspPI GGNCC 4 cut(s) 657, 692, 940, 1119
PspPPI RGGWCCY 1 cut(s) 657
PspXI VCTCGAGB 1 cut(s) 335
PstNI CAGNNNCTG 1 cut(s) 246
RsaI GTAC 2 cut(s) 448, 587
RsaNI GTAC 2 cut(s) 447, 586
SacI GAGCTC 1 cut(s) 37
SaqAI TTAA 3 cut(s) 638, 707, 1201
SatI GCNGC 4 cut(s) 13, 16, 19, 118
Sau3AI GATC 2 cut(s) 481, 517
Sau96I GGNCC 4 cut(s) 657, 692, 940, 1119
SchI GAGTC 1 cut(s) 241
ScrFI CCNGG 4 cut(s) 214, 646, 696, 944
SduI GDGCHC 3 cut(s) 37, 142, 718
SfaNI GCATC 4 cut(s) 96, 263, 301, 999
SfoI GGCGCC 1 cut(s) 64
Sfr274I CTCGAG 1 cut(s) 335
SinI GGWCC 2 cut(s) 657, 940
SlaI CTCGAG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 557
Sse9I AATT 7 cut(s) 324, 375, 411, 460, 589, 995, 1136
SsiI CCGC 6 cut(s) 5, 12, 15, 18, 494, 537
SspDI GGCGCC 1 cut(s) 62
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 37
StyD4I CCNGG 4 cut(s) 212, 644, 694, 942
StyI CCWWGG 3 cut(s) 131, 258, 1071
TaaI ACNGT 3 cut(s) 248, 278, 619
TaqI TCGA 2 cut(s) 57, 336
TasI AATT 7 cut(s) 324, 375, 411, 460, 589, 995, 1136
TatI WGTACW 1 cut(s) 446
TauI GCSGC 3 cut(s) 15, 18, 21
TfiI GAWTC 6 cut(s) 359, 551, 761, 811, 947, 1142
Tru1I TTAA 3 cut(s) 638, 707, 1201
Tru9I TTAA 3 cut(s) 638, 707, 1201
TscAI CASTG 2 cut(s) 49, 1189
TseFI GTSAC 3 cut(s) 46, 163, 1177
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 3 cut(s) 46, 163, 1177
TspDTI ATGAA 3 cut(s) 14, 87, 941
TspRI CASTG 2 cut(s) 49, 1189
VpaK11BI GGWCC 2 cut(s) 657, 940
XhoI CTCGAG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.