Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007728.1

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

22296 .. 25005

Gene Structure 2710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007728.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

atggaggcttataagaaatgggtcagggagaacaaggactatgttcactccttggagtctctcgccaatggattcacttggcttctacctgaacggttttctcaatcagagatagcaccagaagcagtaaccactatcttgggaatattaactgctgtcaatgaacatataatcgacacagcttctcctcgattacatgctggccatgctgcgcgtaattcttttccttatccattgtgtatatctgcactaaaggacttggaaacgttggttgaagttgtggctcaacagtactttggtgatgacaaaaaatggaattacattgctattatggaggctagcaaggtgctagttaggttagctttgttccggaacagtggatataagatgcttctccatggaggagagacaccaaatgatgaaaaaaatttggatgcttcaactcctcagcgtcgaagtggtggttttatgaagcctggtgagcagcatgggaatggtcacttgagaaataatcatgcacaggatccatggaatttagaaggaagagcactatctgcattgaataggtttggagaaaaggctagaactgtttcagatccagtatggttgcgtcgggttcaacaccagcatgccattatggagcctccaactccaatggttgagaggtcgactctatcctccatattgtccgaaaagggtctccatggggctttgtatgtggctggggaagtgctatttataacaagaccacttatttatgttttatttattcggaaatatggagcgcgctcctggattccttggtttctttcgctggctgtggacttcactggaatgggcattctatctcgaattacttcgtccacaggtagtacaaaagagcagcagtttcatctttctgtccctgaaaagaatgaggttaaaagacgaaaactgttatgggcactttacctcatgagagatccgtttttcagcaagtataccaggcgaagacttgaaggcactgagaatatgttggaacatataccagtagttggatttcttgcagcaaaacttgttgagcttatttcaggagcacagactaggtatacctacatgtcgggatcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

369

Amino Acids

41.87

Weight (kDa)

9.38

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	12, 740
AccB7I	CCANNNNNTGG	1 cut(s)	1034
AccI	GTMKAC	3 cut(s)	668, 980, 1088
AccII	CGCG	2 cut(s)	214, 787
AccIII	TCCGGA	1 cut(s)	369
AclI	AACGTT	1 cut(s)	266
AclWI	GGATC	4 cut(s)	518, 531, 590, 956
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	427, 532
AfaI	GTAC	2 cut(s)	293, 874
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	5 cut(s)	275, 441, 562, 620, 998
AjnI	CCWGG	3 cut(s)	475, 791, 983
AluBI	AGCT	3 cut(s)	182, 362, 1063
AluI	AGCT	3 cut(s)	182, 362, 1063
Alw21I	GWGCWC	2 cut(s)	550, 1078
Alw26I	GTCTC	3 cut(s)	63, 401, 704
AlwI	GGATC	4 cut(s)	518, 531, 590, 956
Aor13HI	TCCGGA	1 cut(s)	369
AoxI	GGCC	1 cut(s)	202
ApeKI	GCWGC	4 cut(s)	209, 484, 883, 1046
ApoI	RAATTY	2 cut(s)	427, 532
Asp700I	GAANNNNTTC	2 cut(s)	589, 856
AspLEI	GCGC	3 cut(s)	214, 787, 789
AsuHPI	GGTGA	2 cut(s)	311, 491
AsuNHI	GCTAGC	1 cut(s)	338
BaeGI	GKGCMC	1 cut(s)	946
BalI	TGGCCA	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	997
Bbv12I	GWGCWC	2 cut(s)	550, 1078
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	196, 496, 895, 1058
BciT130I	CCWGG	3 cut(s)	477, 793, 985
BcoDI	GTCTC	3 cut(s)	63, 401, 704
BfaI	CTAG	4 cut(s)	339, 350, 582, 1083
BisI	GCNGC	4 cut(s)	210, 485, 884, 1047
BlsI	GCNGC	4 cut(s)	211, 486, 885, 1048
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	3 cut(s)	477, 793, 985
BmiI	GGNNCC	2 cut(s)	525, 642
BmrFI	CCNGG	3 cut(s)	477, 793, 985
BmsI	GCATC	2 cut(s)	378, 424
BmtI	GCTAGC	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	997
BplI	GAGNNNNNCTC	2 cut(s)	655, 687
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	523
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	5 cut(s)	51, 397, 527, 703, 800
BsaWI	WCCGGW	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse1I	ACTGG	3 cut(s)	599, 835, 1028
Bse3DI	GCAATG	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	477, 793, 985
BseDI	CCNNGG	5 cut(s)	51, 397, 527, 703, 800
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	461, 996
BseNI	ACTGG	3 cut(s)	599, 835, 1028
BsePI	GCGCGC	1 cut(s)	785
BseRI	GAGGAG	3 cut(s)	177, 417, 435
BseSI	GKGCMC	1 cut(s)	946
BseXI	GCAGC	4 cut(s)	196, 496, 895, 1058
BseYI	CCCAGC	1 cut(s)	722
BsgI	GTGCAG	1 cut(s)	231
Bsh1236I	CGCG	2 cut(s)	214, 787
BshFI	GGCC	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	550, 1078
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmAI	GTCTC	3 cut(s)	63, 401, 704
BsmFI	GGGAC	1 cut(s)	887
BsmI	GAATGC	1 cut(s)	840
BsnI	GGCC	1 cut(s)	204
Bso31I	GGTCTC	1 cut(s)	704
Bsp1286I	GDGCHC	3 cut(s)	550, 946, 1078
Bsp13I	TCCGGA	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	523, 595, 961, 1103
Bsp19I	CCATGG	3 cut(s)	397, 527, 703
BspANI	GGCC	1 cut(s)	204
BspCNI	CTCAG	2 cut(s)	460, 997
BspEI	TCCGGA	1 cut(s)	369
BspFNI	CGCG	2 cut(s)	214, 787
BspHI	TCATGA	1 cut(s)	954
BspLI	GGNNCC	2 cut(s)	525, 642
BspOI	GCTAGC	1 cut(s)	342
BspPI	GGATC	4 cut(s)	518, 531, 590, 956
BspQI	GCTCTTC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	704
BsrDI	GCAATG	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	599, 835, 1028
BssECI	CCNNGG	5 cut(s)	51, 397, 527, 703, 800
BssHII	GCGCGC	1 cut(s)	785
BssMI	GATC	4 cut(s)	523, 595, 961, 1103
BssNAI	GTATAC	2 cut(s)	981, 1089
BssT1I	CCWWGG	5 cut(s)	51, 397, 527, 703, 800
Bst1107I	GTATAC	2 cut(s)	981, 1089
Bst2UI	CCWGG	3 cut(s)	477, 793, 985
Bst4CI	ACNGT	5 cut(s)	96, 291, 377, 589, 936
Bst6I	CTCTTC	1 cut(s)	538
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	5 cut(s)	202, 340, 630, 787, 816
BstDEI	CTNAG	2 cut(s)	447, 1005
BstDSI	CCRYGG	3 cut(s)	397, 527, 703
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	2 cut(s)	214, 787
BstHHI	GCGC	3 cut(s)	214, 787, 789
BstKTI	GATC	4 cut(s)	526, 598, 964, 1106
BstMAI	GTCTC	3 cut(s)	63, 401, 704
BstMBI	GATC	4 cut(s)	523, 595, 961, 1103
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 206, 481, 554
BstNI	CCWGG	3 cut(s)	477, 793, 985
BstNSI	RCATGY	3 cut(s)	200, 632, 1099
BstSCI	CCNGG	3 cut(s)	475, 791, 983
BstSLI	GKGCMC	1 cut(s)	946
BstUI	CGCG	2 cut(s)	214, 787
BstV1I	GCAGC	4 cut(s)	196, 496, 895, 1058
BstV2I	GAAGAC	1 cut(s)	997
BstX2I	RGATCY	3 cut(s)	523, 595, 961
BstXI	CCANNNNNNTGG	1 cut(s)	139
BstYI	RGATCY	3 cut(s)	523, 595, 961
BstZ17I	GTATAC	2 cut(s)	981, 1089
BsuRI	GGCC	1 cut(s)	204
BtgI	CCRYGG	3 cut(s)	397, 527, 703
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	3 cut(s)	382, 828, 1002
Cac8I	GCNNGC	5 cut(s)	202, 340, 630, 787, 816
CciI	TCATGA	1 cut(s)	954
CfoI	GCGC	3 cut(s)	214, 787, 789
CseI	GACGC	2 cut(s)	440, 599
Csp6I	GTAC	2 cut(s)	292, 873
CviQI	GTAC	2 cut(s)	292, 873
DdeI	CTNAG	2 cut(s)	447, 1005
DpnI	GATC	4 cut(s)	525, 597, 963, 1105
DpnII	GATC	4 cut(s)	523, 595, 961, 1103
EaeI	YGGCCR	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	538
EarI	CTCTTC	1 cut(s)	538
Eco130I	CCWWGG	5 cut(s)	51, 397, 527, 703, 800
Eco31I	GGTCTC	1 cut(s)	704
EcoRII	CCWGG	3 cut(s)	475, 791, 983
EcoT14I	CCWWGG	5 cut(s)	51, 397, 527, 703, 800
ErhI	CCWWGG	5 cut(s)	51, 397, 527, 703, 800
FaqI	GGGAC	1 cut(s)	887
FblI	GTMKAC	3 cut(s)	668, 980, 1088
Fnu4HI	GCNGC	4 cut(s)	210, 485, 884, 1047
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	210, 485, 884, 1047
FspBI	CTAG	4 cut(s)	339, 350, 582, 1083
GlaI	GCGC	3 cut(s)	213, 786, 788
GluI	GCNGC	4 cut(s)	210, 485, 884, 1047
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	204
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	2 cut(s)	440, 599
HhaI	GCGC	3 cut(s)	214, 787, 789
Hin6I	GCGC	3 cut(s)	212, 785, 787
HinP1I	GCGC	3 cut(s)	212, 785, 787
HincII	GTYRAC	1 cut(s)	669
HindII	GTYRAC	1 cut(s)	669
HinfI	GANTC	4 cut(s)	56, 72, 670, 796
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	2 cut(s)	311, 491
Hpy166II	GTNNAC	6 cut(s)	46, 669, 823, 864, 981, 1089
Hpy188I	TCNGA	4 cut(s)	109, 595, 691, 774
Hpy188III	TCNNGA	5 cut(s)	370, 849, 955, 1071, 1101
Hpy8I	GTNNAC	6 cut(s)	46, 669, 823, 864, 981, 1089
Hpy99I	CGWCG	2 cut(s)	456, 615
HpyAV	CCTTC	2 cut(s)	533, 992
HpyCH4III	ACNGT	5 cut(s)	96, 291, 377, 589, 936
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	4 cut(s)	248, 518, 557, 1046
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 206, 481, 554
HpyF3I	CTNAG	2 cut(s)	447, 1005
HpySE526I	ACGT	1 cut(s)	266
HspAI	GCGC	3 cut(s)	212, 785, 787
Kpn2I	TCCGGA	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	523, 595, 961, 1103
LguI	GCTCTTC	1 cut(s)	538
LmnI	GCTCC	4 cut(s)	640, 782, 794, 1073
Lsp1109I	GCAGC	4 cut(s)	196, 496, 895, 1058
LweI	GCATC	2 cut(s)	378, 424
MaeI	CTAG	4 cut(s)	339, 350, 582, 1083
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	127, 497
MalI	GATC	4 cut(s)	525, 597, 963, 1105
MboI	GATC	4 cut(s)	523, 595, 961, 1103
MboII	GAAGA	2 cut(s)	555, 1002
MflI	RGATCY	3 cut(s)	523, 595, 961
MhlI	GDGCHC	3 cut(s)	550, 946, 1078
MlsI	TGGCCA	1 cut(s)	204
MluCI	AATT	5 cut(s)	217, 316, 427, 532, 852
MluNI	TGGCCA	1 cut(s)	204
MlyI	GAGTC	2 cut(s)	65, 664
MmeI	TCCRAC	3 cut(s)	671, 996, 1015
MnlI	CCTC	9 cut(s)	198, 328, 395, 456, 654, 657, 688, 910, 962
Mox20I	TGGCCA	1 cut(s)	204
MroI	TCCGGA	1 cut(s)	369
MroXI	GAANNNNTTC	2 cut(s)	589, 856
MscI	TGGCCA	1 cut(s)	204
MseI	TTAA	2 cut(s)	149, 921
MslI	CAYNNNNRTG	3 cut(s)	492, 627, 833
Msp20I	TGGCCA	1 cut(s)	204
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	3 cut(s)	477, 793, 985
Mva1269I	GAATGC	1 cut(s)	840
MvaI	CCWGG	3 cut(s)	477, 793, 985
MvnI	CGCG	2 cut(s)	214, 787
MwoI	GCNNNNNNNGC	4 cut(s)	122, 206, 481, 554
NcoI	CCATGG	3 cut(s)	397, 527, 703
NdeII	GATC	4 cut(s)	523, 595, 961, 1103
NheI	GCTAGC	1 cut(s)	338
NlaIV	GGNNCC	2 cut(s)	525, 642
NmuCI	GTSAC	1 cut(s)	497
NspI	RCATGY	3 cut(s)	200, 632, 1099
PaeI	GCATGC	1 cut(s)	632
PagI	TCATGA	1 cut(s)	954
PauI	GCGCGC	1 cut(s)	785
PciI	ACATGT	1 cut(s)	1095
PciSI	GCTCTTC	1 cut(s)	538
PctI	GAATGC	1 cut(s)	840
PdmI	GAANNNNTTC	2 cut(s)	589, 856
PfeI	GAWTC	2 cut(s)	72, 796
PflMI	CCANNNNNTGG	1 cut(s)	1034
PfoI	TCCNGGA	1 cut(s)	791
PkrI	GCNGC	4 cut(s)	211, 486, 885, 1048
PleI	GAGTC	2 cut(s)	64, 664
PpsI	GAGTC	2 cut(s)	64, 664
PscI	ACATGT	1 cut(s)	1095
PsiI	TTATAA	2 cut(s)	12, 740
Psp1406I	AACGTT	1 cut(s)	266
Psp6I	CCWGG	3 cut(s)	475, 791, 983
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	3 cut(s)	475, 791, 983
PspN4I	GGNNCC	2 cut(s)	525, 642
PsuI	RGATCY	3 cut(s)	523, 595, 961
PteI	GCGCGC	1 cut(s)	785
RsaI	GTAC	2 cut(s)	293, 874
RsaNI	GTAC	2 cut(s)	292, 873
RseI	CAYNNNNRTG	3 cut(s)	492, 627, 833
SalI	GTCGAC	1 cut(s)	667
SapI	GCTCTTC	1 cut(s)	538
SaqAI	TTAA	2 cut(s)	149, 921
SatI	GCNGC	4 cut(s)	210, 485, 884, 1047
Sau3AI	GATC	4 cut(s)	523, 595, 961, 1103
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	2 cut(s)	65, 664
ScrFI	CCNGG	3 cut(s)	477, 793, 985
SduI	GDGCHC	3 cut(s)	550, 946, 1078
SfaNI	GCATC	2 cut(s)	378, 424
SmiMI	CAYNNNNRTG	3 cut(s)	492, 627, 833
SmlI	CTYRAG	1 cut(s)	502
SmoI	CTYRAG	1 cut(s)	502
SphI	GCATGC	1 cut(s)	632
Sse9I	AATT	5 cut(s)	217, 316, 427, 532, 852
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	4 cut(s)	339, 350, 582, 1083
StyD4I	CCNGG	3 cut(s)	475, 791, 983
StyI	CCWWGG	5 cut(s)	51, 397, 527, 703, 800
TaaI	ACNGT	5 cut(s)	96, 291, 377, 589, 936
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	5 cut(s)	174, 190, 454, 668, 850
TasI	AATT	5 cut(s)	217, 316, 427, 532, 852
TatI	WGTACW	2 cut(s)	291, 872
TfiI	GAWTC	2 cut(s)	72, 796
Tru1I	TTAA	2 cut(s)	149, 921
Tru9I	TTAA	2 cut(s)	149, 921
TscAI	CASTG	3 cut(s)	382, 835, 1009
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	4 cut(s)	209, 484, 883, 1046
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	4 cut(s)	177, 435, 485, 881
TspGWI	ACGGA	1 cut(s)	954
TspRI	CASTG	3 cut(s)	382, 835, 1009
Van91I	CCANNNNNTGG	1 cut(s)	1034
XapI	RAATTY	2 cut(s)	427, 532
XceI	RCATGY	3 cut(s)	200, 632, 1099
XmiI	GTMKAC	3 cut(s)	668, 980, 1088
XmnI	GAANNNNTTC	2 cut(s)	589, 856
XspI	CTAG	4 cut(s)	339, 350, 582, 1083
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.