Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031674.1

Orthogroup ID

OG0004742

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 714

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

atggttgagaggtcgactctatcctccatattgtcggaaaaaggtctccatggggctttgtatgtggctggggaagtgctatttataacaagaccacttatttatgttttatttattcggaaatatggagctcgctcctggattccttggtttctttcgctggctgtggacttcactggaatgggcattctatctcgaattacttcgtccacaggtagtacaaaagagcagcagtttcatctttctgtccctgaaaagaatgaggttaaaagacgaaaactgttatgggcactttacctcatgagagatccgtttttcagcaagtataccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006996 GO:0007031 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016053 GO:0019752 GO:0031090 GO:0031903 GO:0031984 GO:0032787 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0071704 GO:0071840 GO:0072330 GO:0098588 GO:0098805 GO:0098827 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Pex16

Protein Analysis

110

Amino Acids

12.69

Weight (kDa)

9.99

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004742)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45690
fragaria_vesca	FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840 FvH4_7g12840
malus_domestica	MD02G1195700.v1.1 MD02G1195800.v1.1
prunus_persica	Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1 Prupe.2G152800_v2.0.a1
pyrus_communis	pycom02g15960 pycom07g11860
rosa_chinensis	RchiOBHm_Chr1g0351871 RchiOBHm_Chr1g0351921
rosa_laevigata	RLG00000028375
rosa_multiflora	Rmu_co8139044.1_g000001 Rmu_sc0007728.1_g000004 Rmu_sc0031674.1_g000001
rosa_roxburghii	Rroxscaffold_4G00303450
rosa_rugosa	Rorug01G0222500 Rorug01G0222800
rosa_samantha	Rh1AG236700 Rh1BG207000 Rh1CG221200 Rh1DG234100
rosa_wichuraiana	Rw1G020600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	14, 326
AclWI	GGATC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	137
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	1 cut(s)	302
ApeKI	GCWGC	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	50
BisI	GCNGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	139
BmrFI	CCNGG	1 cut(s)	139
BplI	GAGNNNNNCTC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	50
BsaJI	CCNNGG	2 cut(s)	49, 146
Bse1I	ACTGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	49, 146
BseNI	ACTGG	1 cut(s)	181
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	1 cut(s)	241
BseYI	CCCAGC	1 cut(s)	68
BsiHKAI	GWGCWC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	186
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	133, 292
Bsp143I	GATC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	49
BspHI	TCATGA	1 cut(s)	300
BspPI	GGATC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	49, 146
BssMI	GATC	1 cut(s)	307
BssNAI	GTATAC	1 cut(s)	327
BssT1I	CCWWGG	2 cut(s)	49, 146
Bst1107I	GTATAC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	139
Bst4CI	ACNGT	1 cut(s)	282
BstC8I	GCNNGC	2 cut(s)	133, 162
BstDSI	CCRYGG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	310
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	307
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	241
BstX2I	RGATCY	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	307
BstZ17I	GTATAC	1 cut(s)	327
BtgI	CCRYGG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	2 cut(s)	133, 162
CciI	TCATGA	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	2 cut(s)	50, 301
CviJI	RGCY	4 cut(s)	56, 68, 131, 164
CviKI_1	RGCY	4 cut(s)	56, 68, 131, 164
CviQI	GTAC	1 cut(s)	219
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	2 cut(s)	49, 146
Eco24I	GRGCYC	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	131
EcoICRI	GAGCTC	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	49, 146
EcoT38I	GRGCYC	1 cut(s)	133
ErhI	CCWWGG	2 cut(s)	49, 146
FaeI	CATG	2 cut(s)	53, 304
FaiI	YATR	9 cut(s)	29, 51, 63, 86, 105, 126, 286, 302, 327
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	2 cut(s)	49, 300
FblI	GTMKAC	2 cut(s)	14, 326
Fnu4HI	GCNGC	1 cut(s)	230
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	72
Hin1II	CATG	2 cut(s)	53, 304
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HinfI	GANTC	2 cut(s)	16, 142
Hpy166II	GTNNAC	4 cut(s)	15, 169, 210, 327
Hpy188I	TCNGA	2 cut(s)	37, 120
Hpy188III	TCNNGA	2 cut(s)	195, 301
Hpy8I	GTNNAC	4 cut(s)	15, 169, 210, 327
HpyCH4III	ACNGT	1 cut(s)	282
Hsp92II	CATG	2 cut(s)	53, 304
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	128, 140
LpnPI	CCDG	7 cut(s)	54, 124, 146, 151, 162, 198, 264
Lsp1109I	GCAGC	1 cut(s)	241
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	133, 292
MluCI	AATT	1 cut(s)	198
MlyI	GAGTC	1 cut(s)	10
MmeI	TCCRAC	1 cut(s)	15
MnlI	CCTC	4 cut(s)	3, 34, 256, 308
MroXI	GAANNNNTTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	267
MslI	CAYNNNNRTG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	53, 304
PagI	TCATGA	1 cut(s)	300
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	202
PfeI	GAWTC	1 cut(s)	142
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	231
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	137
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	307
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
RseI	CAYNNNNRTG	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	133
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	1 cut(s)	230
Sau3AI	GATC	1 cut(s)	307
SchI	GAGTC	1 cut(s)	10
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	2 cut(s)	133, 292
SetI	ASST	6 cut(s)	14, 46, 133, 217, 267, 300
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	49, 146
TaaI	ACNGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	14, 196
TasI	AATT	1 cut(s)	198
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	181
XmiI	GTMKAC	2 cut(s)	14, 326
XmnI	GAANNNNTTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.