AT2G45770

SRP54-type protein, GTPase domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
18851088 .. 18853741
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45770.1

Sequence Viewer

Length: 1101 bp
ATGGCAACTTCTTCTGCTCACCTCTCGTTTCTCGCCGGACGTATATCGCCGTTCTCCTCCGAACGGATCGGATTATTTCCTCTCAGAGGAGAATTTCGTCCACGAATGACCCGGTTCCGGTGCTCGGCCGGACCGAGCGGATTCTTCACGCGGCTGGGTCGGTTGATTAAGGAGAAGGCCAAAAGCGACGTGGAGAAAGTTTTCTCCGGATTCTCTAAGACTAGGGAAAATCTAGCAGTCATCGACGAGCTCTTACTCTTCTGGAATCTTGCTGAAACAGACCGAGTTCTTGATGAATTGGAAGAGGCGCTTTTGGTTTCTGATTTTGGACCGAAGATTACTGTTAGAATTGTGGAGAGGCTAAGAGAGGATATCATGTCAGGAAAACTCAAATCAGGAAGCGAGATTAAGGATGCATTGAAGGAAAGTGTGTTGGAGATGCTGGCTAAGAAAAACAGCAAGACAGAGCTTCAATTGGGTTTTAGGAAACCAGCTGTTATAATGATTGTTGGAGTGAACGGAGGTGGGAAGACGACATCTCTTGGAAAGCTGGCTCATAGATTGAAAAATGAAGGAACTAAGGTATTAATGGCAGCAGGTGATACATTTAGAGCAGCAGCAAGTGACCAATTAGAGATATGGGCAGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAGGAGACAAGGCTAAAGCAGCCACGGTTCTCTCAAAGGCTGTGAAAAGGGGGAAGGAGGAAGGTTATGATGTTGTACTGTGCGACACATCTGGACGTCTCCATACTAATTACAGTTTGATGGAGGAGTTGATTGCGTGCAAAAAAGCAGTGGGCAAGATTGTCTCTGGTGCACCTAATGAGATCCTACTTGTCCTTGATGGAAACACTGGTTTGAACATGCTTCCACAAGCTAGAGAATTCAACGAGGTTGTTGGTATCACCGGTTTGATATTGACGAAACTAGATGGCTCTGCTAGAGGAGGCTGTGTGGTCAGTGTGGTTGAGGAATTGGGCATTCCCGTAAAGTTTATCGGTGTAGGAGAAGCTGTAGAAGATCTCCAACCTTTTGATCCGGAGGCTTTTGTGAATGCTATATTCTCTTAA

Protein Analysis

366

Amino Acids

39.68

Weight (kDa)

7.59

Isoelectric Point (pI)

24.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 94 - 143 1.3e-09 SRP54-type protein, helical bundle domain
nSTAND_NTPase5 PF25199 152 - 253 4.6e-06 Novel STAND NTPase 5
SRP54 PF00448 164 - 365 4.1e-74 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
AarI CACCTGC 1 cut(s) 587
AatII GACGTC 1 cut(s) 775
Acc36I ACCTGC 1 cut(s) 587
AccBSI CCGCTC 1 cut(s) 138
AccII CGCG 1 cut(s) 151
AccIII TCCGGA 2 cut(s) 206, 1069
AciI CCGC 2 cut(s) 138, 151
AclWI GGATC 3 cut(s) 74, 853, 1061
AcoI YGGCCR 1 cut(s) 126
AcsI RAATTY 2 cut(s) 92, 914
AcuI CTGAAG 1 cut(s) 696
AcyI GRCGYC 1 cut(s) 772
AfaI GTAC 1 cut(s) 753
AfiI CCNNNNNNNGG 4 cut(s) 63, 86, 117, 124
AgeI ACCGGT 1 cut(s) 938
AgsI TTSAA 5 cut(s) 421, 473, 565, 892, 919
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 6 cut(s) 250, 469, 494, 550, 908, 1043
AluI AGCT 6 cut(s) 250, 469, 494, 550, 908, 1043
Alw21I GWGCWC 3 cut(s) 125, 252, 850
Alw26I GTCTC 3 cut(s) 675, 779, 844
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 3 cut(s) 74, 853, 1061
Aor13HI TCCGGA 2 cut(s) 206, 1069
AoxI GGCC 2 cut(s) 126, 177
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 4 cut(s) 593, 614, 617, 695
ApoI RAATTY 2 cut(s) 92, 914
AseI ATTAAT 1 cut(s) 587
AsiGI ACCGGT 1 cut(s) 938
Asp700I GAANNNNTTC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 2 cut(s) 131, 329
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 3 cut(s) 11, 611, 928
AvaII GGWCC 2 cut(s) 131, 329
BaeGI GKGCMC 1 cut(s) 850
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 536
Bbv12I GWGCWC 3 cut(s) 125, 252, 850
BbvI GCAGC 4 cut(s) 605, 626, 629, 707
BccI CCATC 3 cut(s) 790, 869, 956
BceAI ACGGC 1 cut(s) 34
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 3 cut(s) 675, 779, 844
BfaI CTAG 5 cut(s) 222, 233, 909, 959, 972
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 311
BfuAI ACCTGC 1 cut(s) 587
BglII AGATCT 1 cut(s) 1051
BisI GCNGC 5 cut(s) 152, 594, 615, 618, 696
BlsI GCNGC 5 cut(s) 153, 595, 616, 619, 697
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 2 cut(s) 131, 329
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 131, 329
BmiI GGNNCC 1 cut(s) 116
BmrFI CCNGG 1 cut(s) 112
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 403, 429
BmuI ACTGGG 1 cut(s) 663
BpiI GAAGAC 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 772
BsaJI CCNNGG 1 cut(s) 699
BsaWI WCCGGW 4 cut(s) 117, 206, 938, 1069
BsaXI ACNNNNNCTCC 4 cut(s) 969, 999, 1029, 1059
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 86, 117, 124
Bse118I RCCGGY 1 cut(s) 938
Bse1I ACTGG 2 cut(s) 658, 889
BseAI TCCGGA 2 cut(s) 206, 1069
BseDI CCNNGG 1 cut(s) 699
BseGI GGATG 1 cut(s) 418
BseLI CCNNNNNNNGG 4 cut(s) 63, 86, 117, 124
BseMII CTCAG 1 cut(s) 97
BseNI ACTGG 2 cut(s) 658, 889
BseRI GAGGAG 4 cut(s) 46, 102, 815, 990
BseSI GKGCMC 1 cut(s) 850
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 4 cut(s) 605, 626, 629, 707
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 151
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 179
BshTI ACCGGT 1 cut(s) 938
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 3 cut(s) 125, 252, 850
BsiSI CCGG 7 cut(s) 36, 112, 118, 129, 207, 939, 1070
BslI CCNNNNNNNGG 4 cut(s) 63, 86, 117, 124
BsmAI GTCTC 3 cut(s) 675, 779, 844
BsmBI CGTCTC 1 cut(s) 779
BsmI GAATGC 2 cut(s) 1011, 1090
BsnI GGCC 2 cut(s) 128, 179
Bsp1286I GDGCHC 3 cut(s) 125, 252, 850
Bsp13I TCCGGA 2 cut(s) 206, 1069
Bsp143I GATC 4 cut(s) 66, 858, 1051, 1066
BspACI CCGC 2 cut(s) 138, 151
BspANI GGCC 2 cut(s) 128, 179
BspCNI CTCAG 1 cut(s) 96
BspEI TCCGGA 2 cut(s) 206, 1069
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 1 cut(s) 116
BspMI ACCTGC 1 cut(s) 587
BspPI GGATC 3 cut(s) 74, 853, 1061
BsrBI CCGCTC 1 cut(s) 138
BsrFI RCCGGY 1 cut(s) 938
BsrI ACTGG 2 cut(s) 658, 889
BssAI RCCGGY 1 cut(s) 938
BssECI CCNNGG 1 cut(s) 699
BssMI GATC 4 cut(s) 66, 858, 1051, 1066
BssNI GRCGYC 1 cut(s) 772
Bst4CI ACNGT 4 cut(s) 343, 703, 756, 791
Bst6I CTCTTC 2 cut(s) 263, 297
BstACI GRCGYC 1 cut(s) 772
BstC8I GCNNGC 3 cut(s) 444, 552, 814
BstDEI CTNAG 5 cut(s) 83, 216, 362, 447, 579
BstDSI CCRYGG 1 cut(s) 699
BstENI CCTNNNNNAGG 1 cut(s) 84
BstF5I GGATG 1 cut(s) 418
BstFNI CGCG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 4 cut(s) 69, 861, 1054, 1069
BstMAI GTCTC 3 cut(s) 675, 779, 844
BstMBI GATC 4 cut(s) 66, 858, 1051, 1066
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 1 cut(s) 151
BstV1I GCAGC 4 cut(s) 605, 626, 629, 707
BstV2I GAAGAC 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 858, 1051
BstYI RGATCY 2 cut(s) 858, 1051
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 179
BtgI CCRYGG 1 cut(s) 699
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 1 cut(s) 418
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 831, 882, 997
BveI ACCTGC 1 cut(s) 587
Cac8I GCNNGC 3 cut(s) 444, 552, 814
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 938
Cfr13I GGNCC 2 cut(s) 131, 329
CpoI CGGWCCG 1 cut(s) 131
Csp6I GTAC 1 cut(s) 752
CspAI ACCGGT 1 cut(s) 938
CspI CGGWCCG 1 cut(s) 131
CviAII CATG 2 cut(s) 376, 895
CviQI GTAC 1 cut(s) 752
DdeI CTNAG 5 cut(s) 83, 216, 362, 447, 579
DpnI GATC 4 cut(s) 68, 860, 1053, 1068
DpnII GATC 4 cut(s) 66, 858, 1051, 1066
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 2 cut(s) 263, 297
EarI CTCTTC 2 cut(s) 263, 297
Ecl136II GAGCTC 1 cut(s) 250
EclXI CGGCCG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 252
Eco32I GATATC 1 cut(s) 373
Eco47I GGWCC 2 cut(s) 131, 329
Eco52I CGGCCG 1 cut(s) 126
Eco53kI GAGCTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 696
EcoICRI GAGCTC 1 cut(s) 250
EcoNI CCTNNNNNAGG 1 cut(s) 84
EcoRI GAATTC 1 cut(s) 914
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 779
FaeI CATG 2 cut(s) 379, 898
FaiI YATR 9 cut(s) 44, 377, 500, 558, 640, 744, 780, 896, 1091
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 2 cut(s) 375, 894
Fnu4HI GCNGC 5 cut(s) 152, 594, 615, 618, 696
FokI GGATG 1 cut(s) 425
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 5 cut(s) 152, 594, 615, 618, 696
FspBI CTAG 5 cut(s) 222, 233, 909, 959, 972
GlaI GCGC 1 cut(s) 309
GluI GCNGC 5 cut(s) 152, 594, 615, 618, 696
GsaI CCCAGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 2 cut(s) 128, 179
HapII CCGG 7 cut(s) 36, 112, 118, 129, 207, 939, 1070
HhaI GCGC 1 cut(s) 310
Hin1I GRCGYC 1 cut(s) 772
Hin1II CATG 2 cut(s) 379, 898
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HinfI GANTC 3 cut(s) 141, 210, 265
HpaII CCGG 7 cut(s) 36, 112, 118, 129, 207, 939, 1070
HphI GGTGA 3 cut(s) 11, 611, 928
Hpy166II GTNNAC 3 cut(s) 101, 517, 848
Hpy188I TCNGA 4 cut(s) 61, 71, 86, 322
Hpy188III TCNNGA 7 cut(s) 207, 262, 290, 381, 396, 768, 1070
Hpy8I GTNNAC 3 cut(s) 101, 517, 848
Hpy99I CGWCG 2 cut(s) 191, 248
HpyAV CCTTC 6 cut(s) 169, 415, 566, 671, 724, 731
HpyCH4III ACNGT 4 cut(s) 343, 703, 756, 791
HpyCH4IV ACGT 3 cut(s) 40, 189, 772
HpyCH4V TGCA 3 cut(s) 416, 816, 848
HpyF10VI GCNNNNNNNGC 1 cut(s) 695
HpyF3I CTNAG 5 cut(s) 83, 216, 362, 447, 579
HpySE526I ACGT 3 cut(s) 40, 189, 772
Hsp92I GRCGYC 1 cut(s) 772
Hsp92II CATG 2 cut(s) 379, 898
HspAI GCGC 1 cut(s) 308
Kpn2I TCCGGA 2 cut(s) 206, 1069
Kzo9I GATC 4 cut(s) 66, 858, 1051, 1066
Lsp1109I GCAGC 4 cut(s) 605, 626, 629, 707
LweI GCATC 2 cut(s) 403, 429
MaeI CTAG 5 cut(s) 222, 233, 909, 959, 972
MaeII ACGT 3 cut(s) 40, 189, 772
MaeIII GTNAC 1 cut(s) 623
MalI GATC 4 cut(s) 68, 860, 1053, 1068
MbiI CCGCTC 1 cut(s) 138
MboI GATC 4 cut(s) 66, 858, 1051, 1066
MboII GAAGA 7 cut(s) 3, 136, 250, 314, 346, 541, 1061
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 2 cut(s) 858, 1051
MhlI GDGCHC 3 cut(s) 125, 252, 850
MluCI AATT 8 cut(s) 92, 296, 348, 473, 629, 784, 914, 1004
MmeI TCCRAC 3 cut(s) 414, 490, 1081
Mph1103I ATGCAT 1 cut(s) 418
MroI TCCGGA 2 cut(s) 206, 1069
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 4 cut(s) 168, 408, 587, 1099
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 7 cut(s) 36, 112, 118, 129, 207, 939, 1070
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 1 cut(s) 473
Mva1269I GAATGC 2 cut(s) 1011, 1090
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 695
NciI CCSGG 1 cut(s) 112
NdeII GATC 4 cut(s) 66, 858, 1051, 1066
NlaIII CATG 2 cut(s) 379, 898
NlaIV GGNNCC 1 cut(s) 116
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 623
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 1 cut(s) 898
PaqCI CACCTGC 1 cut(s) 587
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PctI GAATGC 2 cut(s) 1011, 1090
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 3 cut(s) 141, 210, 265
PinAI ACCGGT 1 cut(s) 938
PkrI GCNGC 5 cut(s) 153, 595, 616, 619, 697
PshBI ATTAAT 1 cut(s) 587
PsiI TTATAA 1 cut(s) 500
Psp124BI GAGCTC 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 116
PspPI GGNCC 2 cut(s) 131, 329
PsuI RGATCY 2 cut(s) 858, 1051
PvuII CAGCTG 1 cut(s) 494
RsaI GTAC 1 cut(s) 753
RsaNI GTAC 1 cut(s) 752
Rsr2I CGGWCCG 1 cut(s) 131
RsrII CGGWCCG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 252
SaqAI TTAA 4 cut(s) 168, 408, 587, 1099
SatI GCNGC 5 cut(s) 152, 594, 615, 618, 696
Sau3AI GATC 4 cut(s) 66, 858, 1051, 1066
Sau96I GGNCC 2 cut(s) 131, 329
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 3 cut(s) 125, 252, 850
SfaNI GCATC 2 cut(s) 403, 429
SfcI CTRYAG 1 cut(s) 1044
SinI GGWCC 2 cut(s) 131, 329
Sse9I AATT 8 cut(s) 92, 296, 348, 473, 629, 784, 914, 1004
SsiI CCGC 2 cut(s) 138, 151
SspMI CTAG 5 cut(s) 222, 233, 909, 959, 972
SstI GAGCTC 1 cut(s) 252
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 4 cut(s) 343, 703, 756, 791
TaiI ACGT 3 cut(s) 43, 192, 775
TaqI TCGA 1 cut(s) 243
TaqII GACCGA 3 cut(s) 148, 297, 346
TasI AATT 8 cut(s) 92, 296, 348, 473, 629, 784, 914, 1004
TatI WGTACW 1 cut(s) 751
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 3 cut(s) 141, 210, 265
Tru1I TTAA 4 cut(s) 168, 408, 587, 1099
Tru9I TTAA 4 cut(s) 168, 408, 587, 1099
TscAI CASTG 3 cut(s) 831, 889, 997
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 4 cut(s) 593, 614, 617, 695
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 309, 585
TspGWI ACGGA 2 cut(s) 79, 534
TspRI CASTG 3 cut(s) 831, 889, 997
VneI GTGCAC 1 cut(s) 846
VpaK11BI GGWCC 2 cut(s) 131, 329
VspI ATTAAT 1 cut(s) 587
XagI CCTNNNNNAGG 1 cut(s) 84
XapI RAATTY 2 cut(s) 92, 914
XceI RCATGY 1 cut(s) 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 5 cut(s) 222, 233, 909, 959, 972
ZraI GACGTC 1 cut(s) 773
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.