Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006445.1

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

60037 .. 63961

Gene Structure 3925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006445.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggcttcgcctttgccttcttccttctctcacttctcactcctctccaaacccgcaccgccccaaaaccaccaccgccgcctcctcctagccccgacccgacccgcgtcttccgggttccaatgccgggccggaaccgggttcttcaaccgcctcggacgcctcataaaggagaaggccaagagcgacgtggacaagctcttctccgggttctccaagacccgcgacaatctcgccgtcatcgacgagctcctcctctactggaacctcgccgacaccgatcgagtcctcgacgagcttgaagaggctctgctggtatcggattttgggcccaagatcaccattaagattgtggagagtttgagggaggatatagtagctgggaagctcaagtctggaagtgaaataaaggaggcgttgaagaagaatgtgctggatttgttgactatagacgagaaaactgagcttcaacttggatacaggtccaatttgttagtcttccgacaattgagtcatttaacttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

8.89

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	510
AccII	CGCG	2 cut(s)	107, 225
AciI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
AcyI	GRCGYC	1 cut(s)	160
AfiI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
AgsI	TTSAA	4 cut(s)	148, 302, 421, 470
AjiI	CACGTC	1 cut(s)	190
AluBI	AGCT	6 cut(s)	199, 250, 298, 380, 388, 466
AluI	AGCT	6 cut(s)	199, 250, 298, 380, 388, 466
Alw21I	GWGCWC	1 cut(s)	252
AoxI	GGCC	3 cut(s)	129, 177, 329
ApaI	GGGCCC	1 cut(s)	333
AspS9I	GGNCC	4 cut(s)	129, 329, 330, 483
AsuC2I	CCSGG	4 cut(s)	115, 128, 139, 208
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	483
BaeGI	GKGCMC	1 cut(s)	333
BanII	GRGCYC	2 cut(s)	252, 333
BbsI	GAAGAC	2 cut(s)	102, 490
Bbv12I	GWGCWC	1 cut(s)	252
BceAI	ACGGC	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	4 cut(s)	115, 128, 139, 208
BfaI	CTAG	1 cut(s)	89
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	1 cut(s)	470
BisI	GCNGC	1 cut(s)	79
BlsI	GCNGC	1 cut(s)	80
Bme1390I	CCNGG	4 cut(s)	115, 128, 139, 208
Bme18I	GGWCC	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	4 cut(s)	129, 329, 330, 483
BmiI	GGNNCC	4 cut(s)	119, 136, 266, 331
BmrFI	CCNGG	4 cut(s)	115, 128, 139, 208
BoxI	GACNNNNGTC	1 cut(s)	106
BpiI	GAAGAC	2 cut(s)	102, 490
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	4 cut(s)	115, 128, 139, 208
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 138, 169
Bse1I	ACTGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	154
BseLI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	4 cut(s)	32, 74, 242, 245
BseSI	GKGCMC	1 cut(s)	333
BseYI	CCCAGC	1 cut(s)	380
Bsh1236I	CGCG	2 cut(s)	107, 225
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	3 cut(s)	131, 179, 331
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	252
BsiSI	CCGG	5 cut(s)	114, 127, 132, 138, 207
BslI	CCNNNNNNNGG	3 cut(s)	127, 138, 169
BsnI	GGCC	3 cut(s)	131, 179, 331
Bsp120I	GGGCCC	1 cut(s)	329
Bsp1286I	GDGCHC	2 cut(s)	252, 333
Bsp143I	GATC	2 cut(s)	280, 336
BspACI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
BspANI	GGCC	3 cut(s)	131, 179, 331
BspCNI	CTCAG	1 cut(s)	454
BspFNI	CGCG	2 cut(s)	107, 225
BspLI	GGNNCC	4 cut(s)	119, 136, 266, 331
BspQI	GCTCTTC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	2 cut(s)	280, 336
BssNI	GRCGYC	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	206, 297
BstACI	GRCGYC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	462
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstFNI	CGCG	2 cut(s)	107, 225
BstKTI	GATC	2 cut(s)	283, 339
BstMBI	GATC	2 cut(s)	280, 336
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	4 cut(s)	113, 126, 137, 206
BstSFI	CTRYAG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	333
BstUI	CGCG	2 cut(s)	107, 225
BstV2I	GAAGAC	2 cut(s)	102, 490
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	3 cut(s)	131, 179, 331
BtrI	CACGTC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	129, 329, 330, 483
CseI	GACGC	2 cut(s)	96, 168
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	282, 338
DpnII	GATC	2 cut(s)	280, 336
DrdI	GACNNNNNNGTC	1 cut(s)	510
DseDI	GACNNNNNNGTC	1 cut(s)	510
Eam1104I	CTCTTC	2 cut(s)	206, 297
EarI	CTCTTC	2 cut(s)	206, 297
Ecl136II	GAGCTC	1 cut(s)	250
Eco24I	GRGCYC	2 cut(s)	252, 333
Eco47I	GGWCC	1 cut(s)	483
Eco53kI	GAGCTC	1 cut(s)	250
EcoICRI	GAGCTC	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoT38I	GRGCYC	2 cut(s)	252, 333
FaiI	YATR	3 cut(s)	167, 374, 449
FauI	CCCGC	3 cut(s)	61, 112, 230
Fnu4HI	GCNGC	1 cut(s)	79
FriOI	GRGCYC	2 cut(s)	252, 333
Fsp4HI	GCNGC	1 cut(s)	79
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	79
GsaI	CCCAGC	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	131, 179, 331
HapII	CCGG	5 cut(s)	114, 127, 132, 138, 207
HgaI	GACGC	2 cut(s)	96, 168
Hin1I	GRCGYC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	444
HindII	GTYRAC	1 cut(s)	444
HinfI	GANTC	2 cut(s)	285, 511
HpaII	CCGG	5 cut(s)	114, 127, 132, 138, 207
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	193, 444
Hpy188I	TCNGA	3 cut(s)	158, 322, 503
Hpy188III	TCNNGA	1 cut(s)	396
Hpy8I	GTNNAC	2 cut(s)	193, 444
Hpy99I	CGWCG	3 cut(s)	191, 248, 296
HpyAV	CCTTC	3 cut(s)	27, 34, 169
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	280, 336
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	255
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	189
MalI	GATC	2 cut(s)	282, 338
MboI	GATC	2 cut(s)	280, 336
MboII	GAAGA	8 cut(s)	12, 102, 136, 193, 314, 433, 436, 490
MfeI	CAATTG	1 cut(s)	506
MhlI	GDGCHC	2 cut(s)	252, 333
MluCI	AATT	2 cut(s)	487, 506
MlyI	GAGTC	2 cut(s)	294, 520
MmeI	TCCRAC	1 cut(s)	526
MseI	TTAA	2 cut(s)	345, 518
MspI	CCGG	5 cut(s)	114, 127, 132, 138, 207
MspR9I	CCNGG	4 cut(s)	115, 128, 139, 208
MunI	CAATTG	1 cut(s)	506
MvnI	CGCG	2 cut(s)	107, 225
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	4 cut(s)	115, 128, 139, 208
NdeII	GATC	2 cut(s)	280, 336
NlaIV	GGNNCC	4 cut(s)	119, 136, 266, 331
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	2 cut(s)	240, 276
PkrI	GCNGC	1 cut(s)	80
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	2 cut(s)	293, 519
PpsI	GAGTC	2 cut(s)	293, 519
PshAI	GACNNNNGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	252
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	4 cut(s)	119, 136, 266, 331
PspOMI	GGGCCC	1 cut(s)	329
PspPI	GGNCC	4 cut(s)	129, 329, 330, 483
PvuI	CGATCG	1 cut(s)	283
SacI	GAGCTC	1 cut(s)	252
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	345, 518
SatI	GCNGC	1 cut(s)	79
Sau3AI	GATC	2 cut(s)	280, 336
Sau96I	GGNCC	4 cut(s)	129, 329, 330, 483
SchI	GAGTC	2 cut(s)	294, 520
ScrFI	CCNGG	4 cut(s)	115, 128, 139, 208
SduI	GDGCHC	2 cut(s)	252, 333
SetI	ASST	9 cut(s)	192, 201, 252, 270, 300, 382, 390, 468, 485
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
Sse9I	AATT	2 cut(s)	487, 506
SsiI	CCGC	7 cut(s)	54, 59, 76, 79, 105, 151, 223
SspMI	CTAG	1 cut(s)	89
SstI	GAGCTC	1 cut(s)	252
StyD4I	CCNGG	4 cut(s)	113, 126, 137, 206
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	3 cut(s)	243, 283, 291
TasI	AATT	2 cut(s)	487, 506
TauI	GCSGC	1 cut(s)	81
Tru1I	TTAA	2 cut(s)	345, 518
Tru9I	TTAA	2 cut(s)	345, 518
VpaK11BI	GGWCC	1 cut(s)	483
XagI	CCTNNNNNAGG	1 cut(s)	167
XcmI	CCANNNNNNNNNTGG	2 cut(s)	187, 349
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.