MD01G1049200.v1.1

Cell division protein FtsY homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
15193818 .. 15198497
4680 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1049200.v1.1.491

Sequence Viewer

Length: 1098 bp
ATGGCGTCGCCCTTGCCTTCCTCTCTCCCTCATCGTCTCTTACTCCTCTCCAAAACTTCACCGCCTCAGCACCACTGCCTCCTGCTAGCCCCTTCCCGACCCGACCATTCCCGGTTCAAATGCCGGGCTGGGGAGACCGGGTTCTTCACCCGGCTCGGAAGGCTTATCAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCGGGATTCTCAAAGACTCGCGATAATCTCGCCGTCGTCGACGAGCTCTTGCTCTACTGGAACCTCGCCGACACTGATCGAGTCCTCGACGAACTCGAAGAGGCACTGCTGGTATCCGATTTCGGGCCGAAAATTACAATTAAGATTGTGGAGAGCCTGAGGGAGGATATAGCTGCTGGGAAGCTTAAATCTGGGAGCGAAATTAAGGATGCGTTGAAGAAAAGTGTGCTGGACTTGTTAACTATTAAAGGGAAAACTGAACTTCAACTCGGATACAGGAAGCCGGCTGTGGTTATGATTGTTGGCGTTAATGGAGGTGGGAAGACAACATCTCTTGGAAAGCTGGCTTATAGATTGAAGAATGGAGGGGCAAAGGTATTAATGGCAGCAGGGGATACCTTTCGAGCAGCTGCCGGTGACCAACTGGAGATATGGGCCGAGAGGACTGGGTGTGAGATTGTTGTGGCTGAAAAAGAGAAGGCCAAAGCAGCATCAGTTATTTCTCAGGCTGTGAAGACAGGGAAAGAACAAGGTTATGATGTTGTCTTATGTGACACCTCAGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGTAAGAAAGCTGTGACAAAAGTCATGCCTGGTGCTCCTAATGAGATCCTACTAGTTCTGGATGGGACCACGGGTTTAAACATGCTTCCACAAGCAAGAGAATTCAACGAAATTGTTGGTATAACTGGTTTGATTTTGACAAAACTTGACGGTTCTGCTAGAGGAGGCTGTGTGGTCAGCGTGGTGAATGAGCTCGGCATCCCTGTAAAGTTTGTGGGTGTTGGTGAAGGCGTAGAAGACCTCCAACCGTTTGATGCAGAGGCCTTTGTCAATGCCATATTTTCATAG

Protein Analysis

366

Amino Acids

39.24

Weight (kDa)

8.1

Isoelectric Point (pI)

22.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP54_N PF02881 93 - 142 2.2e-09 SRP54-type protein, helical bundle domain
SRP54 PF00448 163 - 364 1.1e-72 SRP54-type protein, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 772
AccI GTMKAC 1 cut(s) 243
AccII CGCG 1 cut(s) 225
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 850
AcsI RAATTY 1 cut(s) 911
AcyI GRCGYC 2 cut(s) 5, 769
AfiI CCNNNNNNNGG 3 cut(s) 130, 327, 367
AgsI TTSAA 5 cut(s) 118, 421, 470, 562, 916
AhlI ACTAGT 1 cut(s) 862
AjiI CACGTC 1 cut(s) 190
AjnI CCWGG 1 cut(s) 838
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 9 cut(s) 199, 250, 377, 388, 547, 614, 789, 821, 1003
AluI AGCT 9 cut(s) 199, 250, 377, 388, 547, 614, 789, 821, 1003
Alw21I GWGCWC 3 cut(s) 252, 847, 1005
Alw26I GTCTC 2 cut(s) 41, 128
AlwI GGATC 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 5 cut(s) 177, 329, 639, 684, 1071
ApeKI GCWGC 5 cut(s) 377, 590, 611, 614, 692
ApoI RAATTY 1 cut(s) 911
AseI ATTAAT 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 329, 639, 876
AsuC2I CCSGG 4 cut(s) 112, 125, 139, 151
AsuHPI GGTGA 5 cut(s) 51, 139, 632, 1006, 1046
AsuNHI GCTAGC 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 1 cut(s) 876
AxyI CCTNAGG 2 cut(s) 362, 763
BanII GRGCYC 2 cut(s) 252, 1005
BbsI GAAGAC 3 cut(s) 533, 725, 1053
Bbv12I GWGCWC 3 cut(s) 252, 847, 1005
BbvCI CCTCAGC 1 cut(s) 66
BbvI GCAGC 5 cut(s) 364, 601, 602, 623, 704
BccI CCATC 2 cut(s) 787, 866
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 840
BciVI GTATCC 3 cut(s) 328, 470, 592
BcnI CCSGG 4 cut(s) 112, 125, 139, 151
BcoDI GTCTC 2 cut(s) 41, 128
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 3 cut(s) 86, 863, 969
BfuI GTATCC 3 cut(s) 328, 470, 592
BisI GCNGC 5 cut(s) 378, 591, 612, 615, 693
BlsI GCNGC 5 cut(s) 379, 592, 613, 616, 694
Bme1390I CCNGG 5 cut(s) 112, 125, 139, 151, 840
Bme18I GGWCC 1 cut(s) 876
BmeT110I CYCGRG 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 190
BmgT120I GGNCC 3 cut(s) 329, 639, 876
BmiI GGNNCC 2 cut(s) 266, 877
BmrFI CCNGG 5 cut(s) 112, 125, 139, 151, 840
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 403, 704, 1017, 1054
BmtI GCTAGC 1 cut(s) 89
BmuI ACTGGG 1 cut(s) 660
BoxI GACNNNNGTC 1 cut(s) 830
BpiI GAAGAC 3 cut(s) 533, 725, 1053
BpmI CTGGAG 1 cut(s) 650
Bpu10I CCTNAGC 1 cut(s) 66
BpuMI CCSGG 4 cut(s) 112, 125, 139, 151
BsaHI GRCGYC 2 cut(s) 5, 769
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 879
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 966, 996
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 327, 367
Bse118I RCCGGY 2 cut(s) 487, 617
Bse1I ACTGG 4 cut(s) 266, 633, 655, 940
Bse21I CCTNAGG 2 cut(s) 362, 763
BseBI CCWGG 1 cut(s) 840
BseDI CCNNGG 1 cut(s) 879
BseGI GGATG 3 cut(s) 418, 877, 1008
BseLI CCNNNNNNNGG 3 cut(s) 130, 327, 367
BseMII CTCAG 4 cut(s) 80, 353, 722, 777
BseNI ACTGG 4 cut(s) 266, 633, 655, 940
BseRI GAGGAG 2 cut(s) 35, 987
BseXI GCAGC 5 cut(s) 364, 601, 602, 623, 704
BseYI CCCAGC 2 cut(s) 128, 380
BsgI GTGCAG 1 cut(s) 758
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 5 cut(s) 179, 331, 641, 686, 1073
BsiHKAI GWGCWC 3 cut(s) 252, 847, 1005
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 6 cut(s) 112, 124, 138, 151, 488, 618
BslFI GGGAC 1 cut(s) 889
BslI CCNNNNNNNGG 3 cut(s) 130, 327, 367
BsmAI GTCTC 2 cut(s) 41, 128
BsmBI CGTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 889
BsnI GGCC 5 cut(s) 179, 331, 641, 686, 1073
Bso31I GGTCTC 1 cut(s) 128
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 3 cut(s) 252, 847, 1005
Bsp143I GATC 2 cut(s) 280, 855
Bsp68I TCGCGA 1 cut(s) 225
BspACI CCGC 1 cut(s) 62
BspANI GGCC 5 cut(s) 179, 331, 641, 686, 1073
BspCNI CTCAG 4 cut(s) 79, 354, 721, 776
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 2 cut(s) 266, 877
BspOI GCTAGC 1 cut(s) 89
BspPI GGATC 1 cut(s) 850
BspQI GCTCTTC 1 cut(s) 206
BspTNI GGTCTC 1 cut(s) 128
BsrFI RCCGGY 2 cut(s) 487, 617
BsrI ACTGG 4 cut(s) 266, 633, 655, 940
BssAI RCCGGY 2 cut(s) 487, 617
BssECI CCNNGG 1 cut(s) 879
BssMI GATC 2 cut(s) 280, 855
BssNI GRCGYC 2 cut(s) 5, 769
Bst2UI CCWGG 1 cut(s) 840
Bst4CI ACNGT 2 cut(s) 962, 1059
Bst6I CTCTTC 3 cut(s) 206, 297, 792
BstACI GRCGYC 2 cut(s) 5, 769
BstC8I GCNNGC 3 cut(s) 87, 489, 549
BstDEI CTNAG 4 cut(s) 66, 362, 708, 763
BstDSI CCRYGG 1 cut(s) 879
BstEII GGTNACC 1 cut(s) 620
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 3 cut(s) 418, 877, 1008
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 2 cut(s) 283, 858
BstMAI GTCTC 2 cut(s) 41, 128
BstMBI GATC 2 cut(s) 280, 855
BstMWI GCNNNNNNNGC 2 cut(s) 160, 692
BstNI CCWGG 1 cut(s) 840
BstNSI RCATGY 2 cut(s) 813, 895
BstPAI GACNNNNGTC 1 cut(s) 830
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 5 cut(s) 110, 123, 137, 149, 838
BstUI CGCG 1 cut(s) 225
BstV1I GCAGC 5 cut(s) 364, 601, 602, 623, 704
BstV2I GAAGAC 3 cut(s) 533, 725, 1053
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
Bsu36I CCTNAGG 2 cut(s) 362, 763
BsuI GTATCC 3 cut(s) 328, 470, 592
BsuRI GGCC 5 cut(s) 179, 331, 641, 686, 1073
BtgI CCRYGG 1 cut(s) 879
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 3 cut(s) 418, 877, 1008
BtsI GCAGTG 2 cut(s) 73, 308
BtsIMutI CAGTG 3 cut(s) 73, 276, 308
BtuMI TCGCGA 1 cut(s) 225
Cac8I GCNNGC 3 cut(s) 87, 489, 549
Cfr10I RCCGGY 2 cut(s) 487, 617
Cfr13I GGNCC 3 cut(s) 329, 639, 876
CviAII CATG 3 cut(s) 810, 835, 892
DdeI CTNAG 4 cut(s) 66, 362, 708, 763
DpnI GATC 2 cut(s) 282, 857
DpnII GATC 2 cut(s) 280, 855
DraI TTTAAA 1 cut(s) 888
Eam1104I CTCTTC 3 cut(s) 206, 297, 792
EarI CTCTTC 3 cut(s) 206, 297, 792
Ecl136II GAGCTC 2 cut(s) 250, 1003
Eco147I AGGCCT 1 cut(s) 1073
Eco24I GRGCYC 2 cut(s) 252, 1005
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 876
Eco53kI GAGCTC 2 cut(s) 250, 1003
Eco81I CCTNAGG 2 cut(s) 362, 763
Eco88I CYCGRG 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 620
EcoICRI GAGCTC 2 cut(s) 250, 1003
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 911
EcoRII CCWGG 1 cut(s) 838
EcoT38I GRGCYC 2 cut(s) 252, 1005
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 3 cut(s) 813, 838, 895
FaqI GGGAC 1 cut(s) 889
FatI CATG 3 cut(s) 809, 834, 891
FblI GTMKAC 1 cut(s) 243
Fnu4HI GCNGC 5 cut(s) 378, 591, 612, 615, 693
FokI GGATG 3 cut(s) 425, 884, 995
FriOI GRGCYC 2 cut(s) 252, 1005
Fsp4HI GCNGC 5 cut(s) 378, 591, 612, 615, 693
FspBI CTAG 3 cut(s) 86, 863, 969
GluI GCNGC 5 cut(s) 378, 591, 612, 615, 693
GsaI CCCAGC 2 cut(s) 132, 384
GsuI CTGGAG 1 cut(s) 650
HaeIII GGCC 5 cut(s) 179, 331, 641, 686, 1073
HapII CCGG 6 cut(s) 112, 124, 138, 151, 488, 618
Hin1I GRCGYC 2 cut(s) 5, 769
Hin1II CATG 3 cut(s) 813, 838, 895
HincII GTYRAC 2 cut(s) 244, 444
HindII GTYRAC 2 cut(s) 244, 444
HindIII AAGCTT 1 cut(s) 386
HinfI GANTC 3 cut(s) 210, 220, 285
HpaI GTTAAC 1 cut(s) 444
HpaII CCGG 6 cut(s) 112, 124, 138, 151, 488, 618
HphI GGTGA 5 cut(s) 51, 139, 632, 1006, 1046
Hpy166II GTNNAC 2 cut(s) 244, 444
Hpy188I TCNGA 3 cut(s) 158, 322, 476
Hpy188III TCNNGA 5 cut(s) 96, 207, 224, 765, 869
Hpy8I GTNNAC 2 cut(s) 244, 444
Hpy99I CGWCG 6 cut(s) 10, 191, 242, 245, 248, 296
HpyAV CCTTC 6 cut(s) 27, 102, 153, 169, 676, 1031
HpyCH4III ACNGT 2 cut(s) 962, 1059
HpyCH4IV ACGT 2 cut(s) 189, 769
HpyCH4V TGCA 3 cut(s) 775, 809, 1067
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 692
HpyF3I CTNAG 4 cut(s) 66, 362, 708, 763
HpySE526I ACGT 2 cut(s) 189, 769
Hsp92I GRCGYC 2 cut(s) 5, 769
Hsp92II CATG 3 cut(s) 813, 838, 895
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
KspAI GTTAAC 1 cut(s) 444
Kzo9I GATC 2 cut(s) 280, 855
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 399, 850
Lsp1109I GCAGC 5 cut(s) 364, 601, 602, 623, 704
LweI GCATC 4 cut(s) 403, 704, 1017, 1054
MaeI CTAG 3 cut(s) 86, 863, 969
MaeII ACGT 2 cut(s) 189, 769
MaeIII GTNAC 3 cut(s) 620, 755, 823
MalI GATC 2 cut(s) 282, 857
MboI GATC 2 cut(s) 280, 855
MboII GAAGA 9 cut(s) 136, 193, 314, 433, 538, 574, 730, 809, 1058
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 3 cut(s) 252, 847, 1005
MluCI AATT 6 cut(s) 336, 342, 405, 781, 911, 921
MlyI GAGTC 2 cut(s) 214, 294
MmeI TCCRAC 1 cut(s) 1078
MroNI GCCGGC 1 cut(s) 487
MseI TTAA 8 cut(s) 345, 390, 408, 443, 450, 513, 584, 887
MspA1I CMGCKG 1 cut(s) 614
MspI CCGG 6 cut(s) 112, 124, 138, 151, 488, 618
MspR9I CCNGG 5 cut(s) 112, 125, 139, 151, 840
MssI GTTTAAAC 1 cut(s) 888
MvaI CCWGG 1 cut(s) 840
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 160, 692
NaeI GCCGGC 1 cut(s) 489
NciI CCSGG 4 cut(s) 112, 125, 139, 151
NdeII GATC 2 cut(s) 280, 855
NgoMIV GCCGGC 1 cut(s) 487
NheI GCTAGC 1 cut(s) 85
NlaIII CATG 3 cut(s) 813, 838, 895
NlaIV GGNNCC 2 cut(s) 266, 877
NmeAIII GCCGAG 2 cut(s) 667, 984
NmuCI GTSAC 3 cut(s) 620, 755, 823
NruI TCGCGA 1 cut(s) 225
NspI RCATGY 2 cut(s) 813, 895
PceI AGGCCT 1 cut(s) 1073
PciSI GCTCTTC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 2 cut(s) 240, 297
PdiI GCCGGC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 5 cut(s) 379, 592, 613, 616, 694
PleI GAGTC 2 cut(s) 214, 293
PmeI GTTTAAAC 1 cut(s) 888
PpsI GAGTC 2 cut(s) 214, 293
PshAI GACNNNNGTC 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 584
Psp124BI GAGCTC 2 cut(s) 252, 1005
Psp6I CCWGG 1 cut(s) 838
PspEI GGTNACC 1 cut(s) 620
PspFI CCCAGC 2 cut(s) 128, 380
PspGI CCWGG 1 cut(s) 838
PspN4I GGNNCC 2 cut(s) 266, 877
PspPI GGNCC 3 cut(s) 329, 639, 876
PsuI RGATCY 1 cut(s) 855
PvuII CAGCTG 1 cut(s) 614
RruI TCGCGA 1 cut(s) 225
SacI GAGCTC 2 cut(s) 252, 1005
SalI GTCGAC 1 cut(s) 242
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 8 cut(s) 345, 390, 408, 443, 450, 513, 584, 887
SatI GCNGC 5 cut(s) 378, 591, 612, 615, 693
Sau3AI GATC 2 cut(s) 280, 855
Sau96I GGNCC 3 cut(s) 329, 639, 876
SchI GAGTC 2 cut(s) 214, 294
ScrFI CCNGG 5 cut(s) 112, 125, 139, 151, 840
SduI GDGCHC 3 cut(s) 252, 847, 1005
SfaNI GCATC 4 cut(s) 403, 704, 1017, 1054
SgrDI CGTCGACG 1 cut(s) 242
SinI GGWCC 1 cut(s) 876
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 6 cut(s) 336, 342, 405, 781, 911, 921
SseBI AGGCCT 1 cut(s) 1073
SsiI CCGC 1 cut(s) 62
SspMI CTAG 3 cut(s) 86, 863, 969
SstI GAGCTC 2 cut(s) 252, 1005
StuI AGGCCT 1 cut(s) 1073
StyD4I CCNGG 5 cut(s) 110, 123, 137, 149, 838
TaaI ACNGT 2 cut(s) 962, 1059
TaiI ACGT 2 cut(s) 192, 772
TaqI TCGA 5 cut(s) 243, 283, 291, 300, 607
TasI AATT 6 cut(s) 336, 342, 405, 781, 911, 921
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 8 cut(s) 345, 390, 408, 443, 450, 513, 584, 887
Tru9I TTAA 8 cut(s) 345, 390, 408, 443, 450, 513, 584, 887
TscAI CASTG 3 cut(s) 80, 283, 315
TseFI GTSAC 3 cut(s) 620, 755, 823
TseI GCWGC 5 cut(s) 377, 590, 611, 614, 692
Tsp45I GTSAC 3 cut(s) 620, 755, 823
TspDTI ATGAA 1 cut(s) 1083
TspRI CASTG 3 cut(s) 80, 283, 315
VpaK11BI GGWCC 1 cut(s) 876
VspI ATTAAT 1 cut(s) 584
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 1 cut(s) 911
XceI RCATGY 2 cut(s) 813, 895
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 243
XspI CTAG 3 cut(s) 86, 863, 969
ZraI GACGTC 1 cut(s) 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.