Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Forward (+)

21106472 .. 21111100

Gene Structure 4629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G157700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTTCGCCTTTGCCTTCGTCTCTCCATCGGCTTTCACTCCTCTCCAAACCTTCACCACCTCAAAACCACCGCCTCCTTGTAACCCCGACCCGACCCGAACTTTCCCGGTTCGAATGCCGGGCGGGCCAGACCGGGTTCTTCACCCGGCTCGGAAGGCTTATCAAGGAGAAGGCCAAGAGCGACGTAGAGAAGCTCTTCTCGGGATTCTCCAAGACTCGCGATAATCTCGCTGTCATCGACGAGCTCTTGCTCTACTGGAATCTCGCTGACACTGATCGAGTCCTCGACGAACTCGAAGAGGCTCTGCTGGTATCGGATTTTGGTCCAAAAATCACAATTAAGATTGTGGAAAGTTTGAGGGAGGACATAGTTGCTGGGAAGCTGAAATCTGGAAGCGAAATAAAGGAAGCATTGAAGAAGAGTGTGCTGGACTTGTTAACTACAAAAGGGAGCAAAACTGAACTTCAACTTGGATACAGGAAACCAGCTGTGGTTATGATTGTTGGCGTTAATGGAGGTGGGAAGACAACATCTCTTGGAAAGCTGGCTTACAGATTGAAGAAGGAAGGGGCCAAGGTATTGATGGCAGCAGGAGATACATTTCGAGCAGCTGCCTGTGACCAGCTGGAGATATGGGCTGGGAGGACGGGGTGTGAGATTGTTGTAGCTGAAAAAGAGAAGGCTAAAGCAGCATCAGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGTGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGTAAGAAAGCTGTGAGCAAAGTCATTCCTGGTGCTCCTAATGAGATCCTACAAGTTCTGGATGGGACGACGGGTTTAAACATGCTTCCGCAAGCAAGAGAATTCAATGAGATTGTTGGGATAACTGGTTTGATATTGACAAAACTTGATGGCTCTGCTAGAGGTGGCTGTGTGGTCAGTGTGGTAAATGAACTCGGCATCCCTGTAAAGTTTGTGGGTGTTGGTGAAGGTGTAGAAGACCTCCAACCCTTTGATGCAGAGGCCTTTGTTAATGCCATATTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

366

Amino Acids

39.42

Weight (kDa)

8.59

Isoelectric Point (pI)

26.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	772
AccII	CGCG	1 cut(s)	222
AciI	CCGC	3 cut(s)	73, 125, 899
AclWI	GGATC	1 cut(s)	850
AcsI	RAATTY	1 cut(s)	911
AcyI	GRCGYC	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	418, 470, 562, 916
AjnI	CCWGG	1 cut(s)	838
AjuI	GAANNNNNNNTTGG	2 cut(s)	456, 488
AloI	GAACNNNNNNTCC	2 cut(s)	993, 1025
Alw21I	GWGCWC	2 cut(s)	249, 847
Alw26I	GTCTC	1 cut(s)	27
AlwI	GGATC	1 cut(s)	850
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	4 cut(s)	127, 174, 573, 1071
ApeKI	GCWGC	4 cut(s)	590, 611, 614, 692
ApoI	RAATTY	1 cut(s)	911
Asp700I	GAANNNNTTC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	127, 326, 573
AsuC2I	CCSGG	4 cut(s)	109, 122, 136, 148
AsuHPI	GGTGA	3 cut(s)	48, 136, 1046
AsuII	TTCGAA	1 cut(s)	114
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	533, 1053
Bbv12I	GWGCWC	2 cut(s)	249, 847
BbvI	GCAGC	4 cut(s)	601, 602, 623, 704
BccI	CCATC	5 cut(s)	36, 580, 787, 866, 953
BciT130I	CCWGG	1 cut(s)	840
BciVI	GTATCC	1 cut(s)	470
BcnI	CCSGG	4 cut(s)	109, 122, 136, 148
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	1 cut(s)	969
BfuI	GTATCC	1 cut(s)	470
BglI	GCCNNNNNGGC	1 cut(s)	126
BisI	GCNGC	4 cut(s)	591, 612, 615, 693
BlsI	GCNGC	4 cut(s)	592, 613, 616, 694
Bme1390I	CCNGG	5 cut(s)	109, 122, 136, 148, 840
Bme18I	GGWCC	1 cut(s)	326
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	127, 326, 573
BmiI	GGNNCC	1 cut(s)	574
BmrFI	CCNGG	5 cut(s)	109, 122, 136, 148, 840
BmsI	GCATC	3 cut(s)	704, 1017, 1054
BpiI	GAAGAC	2 cut(s)	533, 1053
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	114
BpuMI	CCSGG	4 cut(s)	109, 122, 136, 148
BsaHI	GRCGYC	1 cut(s)	769
BsaJI	CCNNGG	1 cut(s)	576
Bse1I	ACTGG	2 cut(s)	263, 940
BseBI	CCWGG	1 cut(s)	840
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	2 cut(s)	877, 1008
BseMII	CTCAG	1 cut(s)	722
BseNI	ACTGG	2 cut(s)	263, 940
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	4 cut(s)	601, 602, 623, 704
BseYI	CCCAGC	2 cut(s)	377, 641
BsgI	GTGCAG	1 cut(s)	758
Bsh1236I	CGCG	1 cut(s)	222
BshFI	GGCC	4 cut(s)	129, 176, 575, 1073
BsiHKAI	GWGCWC	2 cut(s)	249, 847
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	4 cut(s)	109, 121, 135, 148
BslFI	GGGAC	1 cut(s)	889
BsmAI	GTCTC	1 cut(s)	27
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	889
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	4 cut(s)	129, 176, 575, 1073
BsoBI	CYCGRG	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	249, 847
Bsp143I	GATC	2 cut(s)	277, 855
Bsp68I	TCGCGA	1 cut(s)	222
BspACI	CCGC	3 cut(s)	73, 125, 899
BspANI	GGCC	4 cut(s)	129, 176, 575, 1073
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	203
BspT104I	TTCGAA	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	263, 940
BssECI	CCNNGG	1 cut(s)	576
BssMI	GATC	2 cut(s)	277, 855
BssNI	GRCGYC	1 cut(s)	769
BssT1I	CCWWGG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	840
Bst6I	CTCTTC	5 cut(s)	203, 294, 416, 713, 792
BstACI	GRCGYC	1 cut(s)	769
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	127, 549, 903
BstDEI	CTNAG	1 cut(s)	708
BstF5I	GGATG	2 cut(s)	877, 1008
BstFNI	CGCG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	280, 858
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	2 cut(s)	277, 855
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 157, 692
BstNI	CCWGG	1 cut(s)	840
BstNSI	RCATGY	2 cut(s)	813, 895
BstSCI	CCNGG	5 cut(s)	107, 120, 134, 146, 838
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	601, 602, 623, 704
BstV2I	GAAGAC	2 cut(s)	533, 1053
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	470
BsuRI	GGCC	4 cut(s)	129, 176, 575, 1073
BtsCI	GGATG	2 cut(s)	877, 1008
BtsIMutI	CAGTG	2 cut(s)	273, 994
BtuMI	TCGCGA	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	127, 549, 903
Cfr13I	GGNCC	3 cut(s)	127, 326, 573
CviAII	CATG	2 cut(s)	810, 892
DdeI	CTNAG	1 cut(s)	708
DpnI	GATC	2 cut(s)	279, 857
DpnII	GATC	2 cut(s)	277, 855
DraI	TTTAAA	1 cut(s)	888
Eam1104I	CTCTTC	5 cut(s)	203, 294, 416, 713, 792
EarI	CTCTTC	5 cut(s)	203, 294, 416, 713, 792
Ecl136II	GAGCTC	1 cut(s)	247
Eco130I	CCWWGG	1 cut(s)	576
Eco147I	AGGCCT	1 cut(s)	1073
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	202
EcoICRI	GAGCTC	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	911
EcoRII	CCWGG	1 cut(s)	838
EcoT14I	CCWWGG	1 cut(s)	576
EcoT38I	GRGCYC	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	576
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	2 cut(s)	813, 895
FaiI	YATR	8 cut(s)	371, 500, 637, 741, 754, 811, 893, 1088
FaqI	GGGAC	1 cut(s)	889
FatI	CATG	2 cut(s)	809, 891
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	4 cut(s)	591, 612, 615, 693
FokI	GGATG	2 cut(s)	884, 995
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	4 cut(s)	591, 612, 615, 693
FspBI	CTAG	1 cut(s)	969
GluI	GCNGC	4 cut(s)	591, 612, 615, 693
GsaI	CCCAGC	2 cut(s)	381, 645
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	4 cut(s)	129, 176, 575, 1073
HapII	CCGG	4 cut(s)	109, 121, 135, 148
Hin1I	GRCGYC	1 cut(s)	769
Hin1II	CATG	2 cut(s)	813, 895
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	4 cut(s)	207, 217, 262, 282
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	4 cut(s)	109, 121, 135, 148
HphI	GGTGA	3 cut(s)	48, 136, 1046
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	2 cut(s)	155, 319
Hpy188III	TCNNGA	5 cut(s)	204, 221, 393, 765, 869
Hpy8I	GTNNAC	1 cut(s)	441
Hpy99I	CGWCG	4 cut(s)	188, 245, 293, 883
HpyAV	CCTTC	8 cut(s)	27, 63, 150, 166, 559, 563, 676, 1031
HpyCH4IV	ACGT	2 cut(s)	186, 769
HpyCH4V	TGCA	3 cut(s)	775, 809, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 157, 692
HpyF3I	CTNAG	1 cut(s)	708
HpySE526I	ACGT	2 cut(s)	186, 769
Hsp92I	GRCGYC	1 cut(s)	769
Hsp92II	CATG	2 cut(s)	813, 895
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	2 cut(s)	277, 855
LguI	GCTCTTC	1 cut(s)	203
LmnI	GCTCC	2 cut(s)	453, 850
Lsp1109I	GCAGC	4 cut(s)	601, 602, 623, 704
LweI	GCATC	3 cut(s)	704, 1017, 1054
MaeI	CTAG	1 cut(s)	969
MaeII	ACGT	2 cut(s)	186, 769
MaeIII	GTNAC	3 cut(s)	82, 620, 755
MalI	GATC	2 cut(s)	279, 857
MboI	GATC	2 cut(s)	277, 855
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	249, 847
MluCI	AATT	3 cut(s)	339, 781, 911
MlyI	GAGTC	2 cut(s)	211, 291
MmeI	TCCRAC	1 cut(s)	1078
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	5 cut(s)	342, 440, 513, 887, 1080
MspA1I	CMGCKG	3 cut(s)	491, 614, 628
MspI	CCGG	4 cut(s)	109, 121, 135, 148
MspR9I	CCNGG	5 cut(s)	109, 122, 136, 148, 840
MssI	GTTTAAAC	1 cut(s)	888
Mva1269I	GAATGC	1 cut(s)	122
MvaI	CCWGG	1 cut(s)	840
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	126, 157, 692
NciI	CCSGG	4 cut(s)	109, 122, 136, 148
NdeII	GATC	2 cut(s)	277, 855
NlaIII	CATG	2 cut(s)	813, 895
NlaIV	GGNNCC	1 cut(s)	574
NmeAIII	GCCGAG	1 cut(s)	984
NmuCI	GTSAC	2 cut(s)	620, 755
NruI	TCGCGA	1 cut(s)	222
NspI	RCATGY	2 cut(s)	813, 895
NspV	TTCGAA	1 cut(s)	114
PceI	AGGCCT	1 cut(s)	1073
PciSI	GCTCTTC	1 cut(s)	203
PcsI	WCGNNNNNNNCGW	2 cut(s)	237, 294
PctI	GAATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	207, 262
PkrI	GCNGC	4 cut(s)	592, 613, 616, 694
PleI	GAGTC	2 cut(s)	211, 290
PmeI	GTTTAAAC	1 cut(s)	888
PpsI	GAGTC	2 cut(s)	211, 290
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	838
PspFI	CCCAGC	2 cut(s)	377, 641
PspGI	CCWGG	1 cut(s)	838
PspN4I	GGNNCC	1 cut(s)	574
PspPI	GGNCC	3 cut(s)	127, 326, 573
PsuI	RGATCY	1 cut(s)	855
PvuII	CAGCTG	3 cut(s)	491, 614, 628
RruI	TCGCGA	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	203
SaqAI	TTAA	5 cut(s)	342, 440, 513, 887, 1080
SatI	GCNGC	4 cut(s)	591, 612, 615, 693
Sau3AI	GATC	2 cut(s)	277, 855
Sau96I	GGNCC	3 cut(s)	127, 326, 573
SchI	GAGTC	2 cut(s)	211, 291
ScrFI	CCNGG	5 cut(s)	109, 122, 136, 148, 840
SduI	GDGCHC	2 cut(s)	249, 847
SfaNI	GCATC	3 cut(s)	704, 1017, 1054
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	3 cut(s)	339, 781, 911
SseBI	AGGCCT	1 cut(s)	1073
SsiI	CCGC	3 cut(s)	73, 125, 899
SspMI	CTAG	1 cut(s)	969
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	1073
StyD4I	CCNGG	5 cut(s)	107, 120, 134, 146, 838
StyI	CCWWGG	1 cut(s)	576
TaiI	ACGT	2 cut(s)	189, 772
TaqI	TCGA	6 cut(s)	114, 240, 280, 288, 297, 607
TasI	AATT	3 cut(s)	339, 781, 911
TfiI	GAWTC	2 cut(s)	207, 262
Tru1I	TTAA	5 cut(s)	342, 440, 513, 887, 1080
Tru9I	TTAA	5 cut(s)	342, 440, 513, 887, 1080
TscAI	CASTG	2 cut(s)	280, 994
TseFI	GTSAC	2 cut(s)	620, 755
TseI	GCWGC	4 cut(s)	590, 611, 614, 692
Tsp45I	GTSAC	2 cut(s)	620, 755
TspDTI	ATGAA	1 cut(s)	1014
TspRI	CASTG	2 cut(s)	280, 994
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	911
XceI	RCATGY	2 cut(s)	813, 895
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	969
ZraI	GACGTC	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.