Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009942

Physical Location & Seq

Genomic Coordinates Reverse (-)

21334468 .. 21337118

Gene Structure 2651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028314

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCTTCGCCTTTGCCTTCTTCCCTCTCTCACTTCTCACTCCTCTCCAAACCCGCACCGCCCCAAAACCACCACCACCGCCACCTCCTCCTCCTAGCCCCGACCCGACCCGCGTTTTCCGTGTTCCAATGCCGGGCCGGAACCGGGTTCTTCAACCGGCTCGGACGCCTCATAAAGGAGAAGGCCAAGAGCGACGTGGATAAGCTCTTCTCCGGGTTCTCCAAGACCCGCGACAATCTCGCCGTCATCGACGAGCTCCTCCTCTACTGGAACCTCGCCGACACCGATCGAGTCCTCGACGAGCTTGAAGAGGCTCTGCTGGTATCGGATTTTGGGCCCAAGATCACCATTAAGATTGTGGAGAGTTTGAGGGAGGATATAGTAGCTGGGAAGCTCAAGTCTGGAAGTGAAATAAAGGAGGCGTTGAAGAAGAATGTTCTGGATTTGTTGACTATAGAAGGGAAAACTGAGCTTCAACTTGGATACAGGAAACCAGCTGTGGTTATGGTTGTTGGGGTTAATGGAGGTGGGAAGACCACGTCTCTCGGAAAGCTGGCTTATAGATTGAAGAATGAAGGGGCAAAGGTATTGATTGCAGCAGGAGATACGTTTCGAGCTGCTGCCGGTGACCAGCTGGAGATATGGGCTGAGAGGACTGGGTGTGAGATAGTTGTGGCTGAAAAAGAGAAAGCCAAAGCAGCAACGGTTATTTCTCAGGCTGTGAAGAGAGGGAAAGAACAAGGTTATGATATTGTCTTATGTGACACCTCTGGACGTCTGCACACTAATTACAGCTTGATGGAAGAGTTGATTGCATGTAAGAAAGCTGTAGGCAAAGTCATCCCTGGTGCCCCTAATGAGATCCTACAAGTTCTGGATGGGACCACTGGTTTAAACATGCTTCCACAAGCAAGAGAATTCAATGAAATTGTTGGGATAACTGGTTTGATTTTGACAAAGCTTGATGGTTCTGCAAGAGGTGGCTGTGTGGTTAGTGTGGTAAATGAGCTCGGCATCCCTGTAAAGTTTGTGGGAGTTGGTGAAAGTGTAGAAGACCTACAACCCTTTGATGCAGAGGCTTTTGTGAATGCCATATTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko02024 ko03060 ko03070 map02024 map03060 map03070

Pfam Domains

Protein Families

SRP54 SRP54_N

Protein Analysis

368

Amino Acids

39.62

Weight (kDa)

7.02

Isoelectric Point (pI)

23.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRP54_N	PF02881	95 - 144	1.5e-09	SRP54-type protein, helical bundle domain
nSTAND_NTPase5	PF25199	160 - 254	7.7e-06	Novel STAND NTPase 5
SRP54	PF00448	165 - 366	5.4e-72	SRP54-type protein, GTPase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45770
fragaria_vesca	FvH4_7g13420 FvH4_7g13420
malus_domestica	MD01G1049200.v1.1 MD07G1126100.v1.1
prunus_persica	Prupe.2G157700_v2.0.a1 Prupe.2G158000_v2.0.a1
pyrus_communis	pycom07g12060
rosa_chinensis	RchiOBHm_Chr1g0352781 RchiOBHm_Chr1g0352811 RchiOBHm_Chr1g0352821
rosa_laevigata	RLG00000028314
rosa_multiflora	Rmu_co8452643.1_g000001 Rmu_sc0006445.1_g000007 Rmu_sc0006445.1_g000013
rosa_roxburghii	Rroxscaffold_4G00302380
rosa_rugosa	Rorug01G0231700
rosa_samantha	Rh1AG244900 Rh1BG215600 Rh1CG228700 Rh1DG241600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	778
AccB1I	GGYRCC	1 cut(s)	848
AccII	CGCG	2 cut(s)	113, 231
AciI	CCGC	5 cut(s)	54, 59, 79, 111, 229
AclWI	GGATC	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	917
AcyI	GRCGYC	2 cut(s)	166, 775
AfiI	CCNNNNNNNGG	3 cut(s)	133, 144, 175
AgsI	TTSAA	6 cut(s)	154, 308, 427, 476, 568, 922
AjiI	CACGTC	2 cut(s)	196, 540
AjnI	CCWGG	1 cut(s)	844
Alw21I	GWGCWC	2 cut(s)	258, 1011
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	1 cut(s)	856
AoxI	GGCC	3 cut(s)	135, 183, 335
ApaI	GGGCCC	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	596, 617, 620, 698
ApoI	RAATTY	1 cut(s)	917
AspS9I	GGNCC	4 cut(s)	135, 335, 336, 882
AsuC2I	CCSGG	3 cut(s)	134, 145, 214
AsuHPI	GGTGA	3 cut(s)	337, 638, 1052
AvaII	GGWCC	1 cut(s)	882
BaeGI	GKGCMC	2 cut(s)	339, 853
BanI	GGYRCC	1 cut(s)	848
BanII	GRGCYC	3 cut(s)	258, 339, 1011
BbsI	GAAGAC	2 cut(s)	539, 1059
Bbv12I	GWGCWC	2 cut(s)	258, 1011
BbvI	GCAGC	4 cut(s)	604, 607, 608, 710
BccI	CCATC	3 cut(s)	793, 872, 959
BceAI	ACGGC	1 cut(s)	227
BciT130I	CCWGG	1 cut(s)	846
BciVI	GTATCC	1 cut(s)	476
BcnI	CCSGG	3 cut(s)	134, 145, 214
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	2 cut(s)	453, 828
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	4 cut(s)	597, 618, 621, 699
BlsI	GCNGC	4 cut(s)	598, 619, 622, 700
Bme1390I	CCNGG	4 cut(s)	134, 145, 214, 846
Bme18I	GGWCC	1 cut(s)	882
BmgBI	CACGTC	2 cut(s)	196, 540
BmgT120I	GGNCC	4 cut(s)	135, 335, 336, 882
BmiI	GGNNCC	5 cut(s)	142, 272, 337, 850, 883
BmrFI	CCNGG	4 cut(s)	134, 145, 214, 846
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	1023, 1060
BmuI	ACTGGG	1 cut(s)	666
BpiI	GAAGAC	2 cut(s)	539, 1059
BpmI	CTGGAG	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	3 cut(s)	134, 145, 214
BsaHI	GRCGYC	2 cut(s)	166, 775
BsaJI	CCNNGG	1 cut(s)	844
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 144, 175
Bse118I	RCCGGY	2 cut(s)	156, 623
Bse1I	ACTGG	4 cut(s)	272, 661, 892, 946
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	844
BseGI	GGATG	3 cut(s)	840, 883, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	133, 144, 175
BseMII	CTCAG	3 cut(s)	459, 639, 728
BseNI	ACTGG	4 cut(s)	272, 661, 892, 946
BseRI	GAGGAG	5 cut(s)	32, 77, 80, 248, 251
BseSI	GKGCMC	2 cut(s)	339, 853
BseXI	GCAGC	4 cut(s)	604, 607, 608, 710
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	764
Bsh1236I	CGCG	2 cut(s)	113, 231
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	3 cut(s)	137, 185, 337
BshNI	GGYRCC	1 cut(s)	848
BsiEI	CGRYCG	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	258, 1011
BsiSI	CCGG	6 cut(s)	133, 138, 144, 157, 213, 624
BslFI	GGGAC	1 cut(s)	895
BslI	CCNNNNNNNGG	3 cut(s)	133, 144, 175
BsmAI	GTCTC	1 cut(s)	546
BsmBI	CGTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	895
BsmI	GAATGC	1 cut(s)	1093
BsnI	GGCC	3 cut(s)	137, 185, 337
Bsp120I	GGGCCC	1 cut(s)	335
Bsp1286I	GDGCHC	4 cut(s)	258, 339, 853, 1011
Bsp143I	GATC	3 cut(s)	286, 342, 861
BspACI	CCGC	5 cut(s)	54, 59, 79, 111, 229
BspANI	GGCC	3 cut(s)	137, 185, 337
BspCNI	CTCAG	3 cut(s)	460, 640, 727
BspFNI	CGCG	2 cut(s)	113, 231
BspLI	GGNNCC	5 cut(s)	142, 272, 337, 850, 883
BspPI	GGATC	1 cut(s)	856
BspQI	GCTCTTC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	848
BsrFI	RCCGGY	2 cut(s)	156, 623
BsrI	ACTGG	4 cut(s)	272, 661, 892, 946
BssAI	RCCGGY	2 cut(s)	156, 623
BssECI	CCNNGG	1 cut(s)	844
BssMI	GATC	3 cut(s)	286, 342, 861
BssNI	GRCGYC	2 cut(s)	166, 775
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	1 cut(s)	706
Bst6I	CTCTTC	4 cut(s)	212, 303, 719, 798
BstACI	GRCGYC	2 cut(s)	166, 775
BstC8I	GCNNGC	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	468, 648, 714
BstEII	GGTNACC	1 cut(s)	626
BstENI	CCTNNNNNAGG	1 cut(s)	173
BstF5I	GGATG	3 cut(s)	840, 883, 1014
BstFNI	CGCG	2 cut(s)	113, 231
BstKTI	GATC	3 cut(s)	289, 345, 864
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	3 cut(s)	286, 342, 861
BstMCI	CGRYCG	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	698
BstNI	CCWGG	1 cut(s)	846
BstNSI	RCATGY	2 cut(s)	819, 901
BstPI	GGTNACC	1 cut(s)	626
BstSCI	CCNGG	4 cut(s)	132, 143, 212, 844
BstSFI	CTRYAG	2 cut(s)	453, 828
BstSLI	GKGCMC	2 cut(s)	339, 853
BstUI	CGCG	2 cut(s)	113, 231
BstV1I	GCAGC	4 cut(s)	604, 607, 608, 710
BstV2I	GAAGAC	2 cut(s)	539, 1059
BstX2I	RGATCY	1 cut(s)	861
BstYI	RGATCY	1 cut(s)	861
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	137, 185, 337
BtrI	CACGTC	2 cut(s)	196, 540
BtsCI	GGATG	3 cut(s)	840, 883, 1014
BtsIMutI	CAGTG	1 cut(s)	885
Cac8I	GCNNGC	1 cut(s)	555
Cfr10I	RCCGGY	2 cut(s)	156, 623
Cfr13I	GGNCC	4 cut(s)	135, 335, 336, 882
CseI	GACGC	1 cut(s)	174
CviAII	CATG	2 cut(s)	816, 898
DdeI	CTNAG	3 cut(s)	468, 648, 714
DpnI	GATC	3 cut(s)	288, 344, 863
DpnII	GATC	3 cut(s)	286, 342, 861
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	4 cut(s)	212, 303, 719, 798
EarI	CTCTTC	4 cut(s)	212, 303, 719, 798
Ecl136II	GAGCTC	2 cut(s)	256, 1009
Eco24I	GRGCYC	3 cut(s)	258, 339, 1011
Eco47I	GGWCC	1 cut(s)	882
Eco53kI	GAGCTC	2 cut(s)	256, 1009
Eco91I	GGTNACC	1 cut(s)	626
EcoICRI	GAGCTC	2 cut(s)	256, 1009
EcoNI	CCTNNNNNAGG	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	626
EcoRI	GAATTC	1 cut(s)	917
EcoRII	CCWGG	1 cut(s)	844
EcoT38I	GRGCYC	3 cut(s)	258, 339, 1011
Esp3I	CGTCTC	1 cut(s)	546
FaeI	CATG	2 cut(s)	819, 901
FaqI	GGGAC	1 cut(s)	895
FatI	CATG	2 cut(s)	815, 897
FauI	CCCGC	3 cut(s)	61, 118, 236
Fnu4HI	GCNGC	4 cut(s)	597, 618, 621, 699
FokI	GGATG	3 cut(s)	827, 890, 1001
FriOI	GRGCYC	3 cut(s)	258, 339, 1011
Fsp4HI	GCNGC	4 cut(s)	597, 618, 621, 699
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	4 cut(s)	597, 618, 621, 699
GsaI	CCCAGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	3 cut(s)	137, 185, 337
HapII	CCGG	6 cut(s)	133, 138, 144, 157, 213, 624
HgaI	GACGC	1 cut(s)	174
Hin1I	GRCGYC	2 cut(s)	166, 775
Hin1II	CATG	2 cut(s)	819, 901
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	1 cut(s)	291
HpaII	CCGG	6 cut(s)	133, 138, 144, 157, 213, 624
HphI	GGTGA	3 cut(s)	337, 638, 1052
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	3 cut(s)	164, 328, 548
Hpy188III	TCNNGA	4 cut(s)	402, 440, 771, 875
Hpy8I	GTNNAC	1 cut(s)	450
Hpy99I	CGWCG	3 cut(s)	197, 254, 302
HpyAV	CCTTC	4 cut(s)	27, 175, 452, 569
HpyCH4III	ACNGT	1 cut(s)	706
HpyCH4IV	ACGT	4 cut(s)	195, 539, 608, 775
HpyCH4V	TGCA	5 cut(s)	596, 781, 815, 974, 1073
HpyF10VI	GCNNNNNNNGC	1 cut(s)	698
HpyF3I	CTNAG	3 cut(s)	468, 648, 714
HpySE526I	ACGT	4 cut(s)	195, 539, 608, 775
Hsp92I	GRCGYC	2 cut(s)	166, 775
Hsp92II	CATG	2 cut(s)	819, 901
Kzo9I	GATC	3 cut(s)	286, 342, 861
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	261
Lsp1109I	GCAGC	4 cut(s)	604, 607, 608, 710
LweI	GCATC	2 cut(s)	1023, 1060
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	4 cut(s)	195, 539, 608, 775
MaeIII	GTNAC	2 cut(s)	626, 761
MalI	GATC	3 cut(s)	288, 344, 863
MboI	GATC	3 cut(s)	286, 342, 861
MflI	RGATCY	1 cut(s)	861
MhlI	GDGCHC	4 cut(s)	258, 339, 853, 1011
MluCI	AATT	3 cut(s)	787, 917, 927
MlyI	GAGTC	1 cut(s)	300
MseI	TTAA	3 cut(s)	351, 519, 893
MspA1I	CMGCKG	2 cut(s)	497, 634
MspI	CCGG	6 cut(s)	133, 138, 144, 157, 213, 624
MspR9I	CCNGG	4 cut(s)	134, 145, 214, 846
MssI	GTTTAAAC	1 cut(s)	894
Mva1269I	GAATGC	1 cut(s)	1093
MvaI	CCWGG	1 cut(s)	846
MvnI	CGCG	2 cut(s)	113, 231
MwoI	GCNNNNNNNGC	1 cut(s)	698
NciI	CCSGG	3 cut(s)	134, 145, 214
NdeII	GATC	3 cut(s)	286, 342, 861
NlaIII	CATG	2 cut(s)	819, 901
NlaIV	GGNNCC	5 cut(s)	142, 272, 337, 850, 883
NmeAIII	GCCGAG	1 cut(s)	990
NmuCI	GTSAC	2 cut(s)	626, 761
NspI	RCATGY	2 cut(s)	819, 901
PciSI	GCTCTTC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	2 cut(s)	246, 282
PctI	GAATGC	1 cut(s)	1093
PflFI	GACNNNGTC	1 cut(s)	538
PkrI	GCNGC	4 cut(s)	598, 619, 622, 700
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	1 cut(s)	299
PmeI	GTTTAAAC	1 cut(s)	894
PpsI	GAGTC	1 cut(s)	299
Psp124BI	GAGCTC	2 cut(s)	258, 1011
Psp6I	CCWGG	1 cut(s)	844
PspEI	GGTNACC	1 cut(s)	626
PspFI	CCCAGC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	5 cut(s)	142, 272, 337, 850, 883
PspOMI	GGGCCC	1 cut(s)	335
PspPI	GGNCC	4 cut(s)	135, 335, 336, 882
PsuI	RGATCY	1 cut(s)	861
PsyI	GACNNNGTC	1 cut(s)	538
PvuI	CGATCG	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	497, 634
SacI	GAGCTC	2 cut(s)	258, 1011
SapI	GCTCTTC	1 cut(s)	212
SaqAI	TTAA	3 cut(s)	351, 519, 893
SatI	GCNGC	4 cut(s)	597, 618, 621, 699
Sau3AI	GATC	3 cut(s)	286, 342, 861
Sau96I	GGNCC	4 cut(s)	135, 335, 336, 882
SchI	GAGTC	1 cut(s)	300
ScrFI	CCNGG	4 cut(s)	134, 145, 214, 846
SduI	GDGCHC	4 cut(s)	258, 339, 853, 1011
SfaNI	GCATC	2 cut(s)	1023, 1060
SfcI	CTRYAG	2 cut(s)	453, 828
SinI	GGWCC	1 cut(s)	882
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	787, 917, 927
SsiI	CCGC	5 cut(s)	54, 59, 79, 111, 229
SspMI	CTAG	1 cut(s)	95
SstI	GAGCTC	2 cut(s)	258, 1011
StyD4I	CCNGG	4 cut(s)	132, 143, 212, 844
TaaI	ACNGT	1 cut(s)	706
TaiI	ACGT	4 cut(s)	198, 542, 611, 778
TaqI	TCGA	4 cut(s)	249, 289, 297, 613
TasI	AATT	3 cut(s)	787, 917, 927
Tru1I	TTAA	3 cut(s)	351, 519, 893
Tru9I	TTAA	3 cut(s)	351, 519, 893
TscAI	CASTG	1 cut(s)	892
TseFI	GTSAC	2 cut(s)	626, 761
TseI	GCWGC	4 cut(s)	596, 617, 620, 698
Tsp45I	GTSAC	2 cut(s)	626, 761
TspDTI	ATGAA	3 cut(s)	588, 939, 1089
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	1 cut(s)	892
Tth111I	GACNNNGTC	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	882
XagI	CCTNNNNNAGG	1 cut(s)	173
XapI	RAATTY	1 cut(s)	917
XceI	RCATGY	2 cut(s)	819, 901
XcmI	CCANNNNNNNNNTGG	2 cut(s)	193, 355
XspI	CTAG	1 cut(s)	95
ZraI	GACGTC	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.